Wall clock time and date at job start Mon Mar 30 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00121 * 2 1 4 4 N 1.46501 * 109.46855 * 125.00135 * 3 2 1 5 5 C 1.46503 * 119.99781 * 265.24062 * 4 3 2 6 6 C 1.50704 * 109.46895 * 270.00122 * 5 4 3 7 7 H 1.07995 * 120.00297 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99548 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00137 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99792 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47248 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47191 * 120.00023 * 10 8 6 13 13 H 1.48501 * 109.47241 * 240.00174 * 10 8 6 14 14 C 1.34778 * 120.00185 * 85.24448 * 4 3 2 15 15 O 1.21500 * 120.00033 * 174.55218 * 14 4 3 16 16 C 1.48294 * 119.99892 * 354.27939 * 14 4 3 17 17 N 1.32540 * 119.11010 * 353.43434 * 16 14 4 18 18 C 1.31957 * 120.83309 * 179.71621 * 17 16 14 19 19 C 1.39453 * 119.08355 * 0.54598 * 18 17 16 20 20 O 1.35728 * 120.80601 * 179.71146 * 19 18 17 21 21 C 1.42901 * 117.00542 * 0.02562 * 20 19 18 22 22 C 1.39443 * 118.38079 * 359.72457 * 19 18 17 23 23 N 1.31952 * 119.08553 * 0.02562 * 22 19 18 24 24 H 1.08004 * 119.99710 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99963 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99710 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47179 * 4.99955 * 3 2 1 28 28 H 1.09007 * 109.46825 * 244.99682 * 3 2 1 29 29 H 1.08994 * 109.47160 * 30.00473 * 5 4 3 30 30 H 1.09000 * 109.46753 * 150.00465 * 5 4 3 31 31 H 0.97000 * 119.99962 * 180.02562 * 9 8 6 32 32 H 1.08004 * 120.45991 * 180.27180 * 18 17 16 33 33 H 1.09001 * 109.47121 * 300.00821 * 21 20 19 34 34 H 1.09002 * 109.46439 * 60.00409 * 21 20 19 35 35 H 1.08995 * 109.47347 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.45598 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5942 1.9590 2.3936 6 6 2.9739 3.4173 2.3722 7 1 3.4634 3.8351 1.5050 8 6 2.6952 4.2182 3.4594 9 7 2.0986 3.7094 4.5152 10 14 3.1652 6.0259 3.4326 11 1 3.8192 6.3482 2.1389 12 1 1.9447 6.8570 3.5902 13 1 4.1047 6.3097 4.5470 14 6 4.2173 0.7794 1.0111 15 8 5.0241 0.8877 1.9131 16 6 4.5766 0.0342 -0.2196 17 7 3.6428 -0.1910 -1.1328 18 6 3.9263 -0.8456 -2.2429 19 6 5.2255 -1.3116 -2.4421 20 8 5.5543 -1.9940 -3.5684 21 6 4.5144 -2.2061 -4.5253 22 6 6.1785 -1.0596 -1.4558 23 7 5.8215 -0.3936 -0.3741 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9314 29 1 1.5156 1.8662 2.5200 30 1 3.1010 1.4637 3.2219 31 1 1.9022 4.2730 5.2799 32 1 3.1617 -1.0220 -2.9850 33 1 3.7064 -2.7740 -4.0640 34 1 4.1332 -1.2436 -4.8668 35 1 4.9103 -2.7625 -5.3748 36 1 7.1946 -1.4055 -1.5753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359432358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:04 Heat of formation + Delta-G solvation = 7.425852 kcal Electronic energy + Delta-G solvation = -21310.828366 eV Core-core repulsion = 17989.991690 eV Total energy + Delta-G solvation = -3320.836676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.60046 -40.62306 -39.36480 -37.42825 -35.26184 -34.80834 -33.66528 -32.39832 -29.78584 -28.56783 -27.08304 -26.07389 -25.54676 -24.20427 -21.62661 -20.57765 -19.27315 -19.25522 -18.72519 -18.49692 -17.26486 -17.12309 -16.52083 -16.34902 -16.14761 -15.63463 -15.54936 -15.02968 -14.70198 -14.56752 -14.23857 -14.17705 -13.41338 -13.23217 -12.97574 -12.81015 -12.59645 -12.51042 -12.32473 -12.27059 -12.20689 -11.92480 -11.64717 -10.94598 -10.64441 -10.30027 -10.12493 -9.84341 -9.49898 -8.22281 -6.36859 -0.60751 -0.07554 1.36774 1.39765 1.41214 1.52064 1.65360 1.87800 2.11147 2.39495 2.70943 2.88849 3.07547 3.11086 3.30492 3.67114 3.84494 4.20653 4.33790 4.35612 4.42493 4.58179 4.63853 4.78389 4.84768 4.94948 5.05361 5.15452 5.20530 5.50786 5.61961 5.75156 5.82651 6.03164 6.04614 6.05343 6.49508 6.70508 6.82585 7.18874 7.35945 8.85497 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.004715 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.531550 B = 5937.383702 C = 6528.849913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.144 3.856 4 N -0.575 5.575 5 C 0.265 3.735 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.969 3.031 11 H -0.270 1.270 12 H -0.266 1.266 13 H -0.280 1.280 14 C 0.562 3.438 15 O -0.566 6.566 16 C 0.222 3.778 17 N -0.440 5.440 18 C 0.058 3.942 19 C 0.066 3.934 20 O -0.300 6.300 21 C 0.005 3.995 22 C 0.107 3.893 23 N -0.464 5.464 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.032 0.968 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.219 0.781 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -12.852 -22.523 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C 0.022 3.978 4 N -0.305 5.305 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.793 3.207 11 H -0.194 1.194 12 H -0.191 1.191 13 H -0.206 1.206 14 C 0.346 3.654 15 O -0.443 6.443 16 C -0.046 4.046 17 N -0.158 5.158 18 C -0.110 4.110 19 C 0.014 3.986 20 O -0.210 6.210 21 C -0.089 4.089 22 C -0.061 4.061 23 N -0.179 5.179 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.050 0.950 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.235 0.765 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.112 -12.320 -21.089 24.424 hybrid contribution 0.346 0.429 -0.199 0.586 sum 0.234 -11.890 -21.288 24.385 Atomic orbital electron populations 1.23967 0.95203 1.02618 1.00337 1.23008 0.95725 0.97784 0.99901 1.21000 0.91862 0.96094 0.88827 1.48076 1.13121 1.53730 1.15587 1.18866 0.94739 0.91792 0.80178 1.21675 1.39450 0.94951 1.02199 0.93096 1.25830 0.94678 1.03790 0.94534 1.70052 1.42377 1.37923 1.06171 0.85347 0.78342 0.78861 0.78117 1.19419 1.19061 1.20615 1.17804 0.82510 0.79735 0.85303 1.90728 1.50146 1.61455 1.42013 1.22180 0.86914 1.00219 0.95246 1.68870 1.34107 1.11222 1.01609 1.24276 0.95647 0.94991 0.96075 1.21128 0.95419 0.92804 0.89248 1.86108 1.40108 1.68288 1.26483 1.23668 0.90798 1.03447 0.90998 1.23304 1.01675 0.94768 0.86384 1.68175 1.18724 1.08332 1.22680 0.88386 0.86701 0.88049 0.90966 0.87611 0.94974 0.98169 0.92265 0.76466 0.90537 0.90547 0.85238 0.77604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 14.32 67.78 0.97 -3.72 16 2 C -0.14 -4.38 8.53 25.64 0.22 -4.16 16 3 C 0.14 5.22 5.43 85.63 0.46 5.69 16 4 N -0.58 -27.39 2.45 -833.40 -2.04 -29.44 16 5 C 0.26 15.08 5.10 85.63 0.44 15.51 16 6 C -0.54 -32.75 9.39 25.60 0.24 -32.51 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.65 5.46 84.66 0.46 1.11 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 10 Si 0.97 46.18 29.54 68.60 2.03 48.20 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 C 0.56 27.63 7.64 86.92 0.66 28.29 16 15 O -0.57 -33.26 16.50 -3.71 -0.06 -33.32 16 16 C 0.22 8.44 7.41 137.56 1.02 9.46 16 17 N -0.44 -12.63 4.18 -188.80 -0.79 -13.42 16 18 C 0.06 1.08 10.31 84.97 0.88 1.95 16 19 C 0.07 1.22 6.75 22.85 0.15 1.38 16 20 O -0.30 -3.86 10.51 -90.51 -0.95 -4.82 16 21 C 0.00 0.02 9.84 113.37 1.12 1.13 16 22 C 0.11 2.58 11.28 84.97 0.96 3.53 16 23 N -0.46 -16.55 10.12 -188.82 -1.91 -18.46 16 24 H 0.10 2.47 7.84 -2.91 -0.02 2.45 16 25 H 0.11 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.10 3.08 6.98 -2.91 -0.02 3.06 16 27 H 0.07 2.67 7.69 -2.39 -0.02 2.65 16 28 H 0.11 3.51 5.74 -2.38 -0.01 3.49 16 29 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 30 H 0.00 0.01 7.50 -2.39 -0.02 0.00 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 32 H 0.22 1.94 6.47 -2.91 -0.02 1.92 16 33 H 0.08 0.15 7.71 -2.39 -0.02 0.13 16 34 H 0.08 0.16 7.71 -2.39 -0.02 0.14 16 35 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.21 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -81.85 315.42 5.23 -76.63 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.09 Total: 3.64 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 7.58 Total: 27.67 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -4.46 Total: -118.00 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.01 Total: -38.14 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -81.85 5.23 -76.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.051 kcal (2) G-P(sol) polarization free energy of solvation -81.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds