Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47011 * 2 1 4 4 C 1.36816 * 120.00302 * 260.31021 * 3 2 1 5 5 H 1.08007 * 119.99712 * 197.68924 * 4 3 2 6 6 C 1.39075 * 120.00027 * 17.68938 * 4 3 2 7 7 N 1.31344 * 119.99995 * 14.45292 * 6 4 3 8 8 Si 1.86795 * 119.99958 * 194.46223 * 6 4 3 9 9 H 1.48507 * 109.47204 * 89.99522 * 8 6 4 10 10 H 1.48499 * 109.47190 * 209.99593 * 8 6 4 11 11 H 1.48500 * 109.46961 * 329.99695 * 8 6 4 12 12 C 1.34779 * 119.99427 * 80.30981 * 3 2 1 13 13 O 1.21599 * 119.99562 * 184.16029 * 12 3 2 14 14 C 1.47766 * 120.00517 * 4.16269 * 12 3 2 15 15 C 1.39569 * 119.65130 * 173.53942 * 14 12 3 16 16 C 1.38253 * 119.14115 * 180.02562 * 15 14 12 17 17 C 1.39399 * 118.44103 * 359.97438 * 16 15 14 18 18 N 1.39467 * 120.39105 * 179.97438 * 17 16 15 19 19 C 1.34777 * 119.99959 * 34.42010 * 18 17 16 20 20 C 1.50698 * 120.00019 * 185.22139 * 19 18 17 21 21 O 1.21276 * 119.99979 * 5.21894 * 19 18 17 22 22 C 1.39365 * 119.22621 * 0.02562 * 17 16 15 23 23 N 1.31371 * 120.78808 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.47053 * 299.99490 * 1 2 3 25 25 H 1.08998 * 109.47286 * 59.99647 * 1 2 3 26 26 H 1.09010 * 109.46842 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47053 * 240.00510 * 2 1 3 28 28 H 1.08998 * 109.47286 * 120.00353 * 2 1 3 29 29 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 30 30 H 1.08001 * 120.43103 * 0.27722 * 15 14 12 31 31 H 1.07996 * 120.78035 * 180.02562 * 16 15 14 32 32 H 0.97001 * 120.00500 * 214.42546 * 18 17 16 33 33 H 1.09005 * 109.47457 * 60.00247 * 20 19 18 34 34 H 1.09006 * 109.47288 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.47314 * 299.99727 * 20 19 18 36 36 H 1.07992 * 119.60886 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4343 1.9598 -1.1679 5 1 3.0492 2.8474 -1.1418 6 6 2.0655 1.4050 -2.3887 7 7 1.1026 0.5132 -2.4407 8 14 2.9397 1.9279 -3.9545 9 1 4.1093 1.0430 -4.1875 10 1 2.0036 1.8237 -5.1025 11 1 3.4013 3.3328 -3.8180 12 6 2.0576 2.0820 1.1506 13 8 2.3909 3.2513 1.1392 14 6 1.6958 1.4293 2.4260 15 6 1.8679 2.1184 3.6275 16 6 1.5265 1.4975 4.8146 17 6 1.0202 0.1998 4.7634 18 7 0.6632 -0.4651 5.9362 19 6 0.1394 0.2244 6.9690 20 6 -0.1369 -0.4715 8.2768 21 8 -0.1096 1.4049 6.8459 22 6 0.8759 -0.4260 3.5265 23 7 1.2101 0.1926 2.4168 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.8456 0.1260 -3.2921 30 1 2.2589 3.1252 3.6295 31 1 1.6484 2.0063 5.7594 32 1 0.7920 -1.4238 6.0088 33 1 0.7927 -0.8776 8.6759 34 1 -0.5556 0.2419 8.9867 35 1 -0.8472 -1.2821 8.1142 36 1 0.4847 -1.4315 3.4797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359742128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = -22.141467 kcal Electronic energy + Delta-G solvation = -21412.616907 eV Core-core repulsion = 18090.498096 eV Total energy + Delta-G solvation = -3322.118811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98885 -40.79246 -39.43118 -37.09088 -36.19631 -33.97309 -33.10542 -31.95327 -31.13064 -29.86427 -27.16186 -25.25172 -24.43334 -23.79270 -21.91744 -21.33850 -19.19841 -18.75351 -18.35211 -17.82625 -17.39790 -16.80948 -16.29662 -15.93710 -15.79973 -15.51244 -15.23164 -14.77913 -14.66132 -14.55962 -14.12104 -13.66337 -13.40788 -13.24825 -13.07467 -12.98007 -12.81762 -12.65685 -12.20560 -12.10712 -12.01594 -11.47644 -11.21941 -10.85994 -10.77627 -10.64194 -10.11300 -9.53626 -9.32027 -8.30203 -5.93317 -0.34744 0.27817 1.36539 1.42316 1.51378 1.54936 1.98155 2.08089 2.26365 2.85058 2.96354 3.21184 3.42883 3.71705 3.82014 3.95935 4.05333 4.20056 4.57469 4.66762 4.71118 4.80523 4.87979 5.01356 5.04917 5.10969 5.16225 5.22428 5.36085 5.39542 5.58928 5.71425 5.99263 6.10823 6.38568 6.50271 6.85842 7.10819 7.14147 7.43152 8.02230 8.61245 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.042948 B = 0.004190 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.795939 B = 6681.452907 C = 7141.339215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.125 3.875 3 N -0.415 5.415 4 C -0.349 4.349 5 H 0.074 0.926 6 C 0.002 3.998 7 N -0.862 5.862 8 Si 0.996 3.004 9 H -0.263 1.263 10 H -0.269 1.269 11 H -0.278 1.278 12 C 0.452 3.548 13 O -0.645 6.645 14 C 0.068 3.932 15 C -0.114 4.114 16 C -0.088 4.088 17 C 0.108 3.892 18 N -0.649 5.649 19 C 0.502 3.498 20 C -0.160 4.160 21 O -0.580 6.580 22 C 0.078 3.922 23 N -0.439 5.439 24 H 0.022 0.978 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.277 0.723 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.437 0.563 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 -12.594 17.416 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.003 3.997 3 N -0.129 5.129 4 C -0.477 4.477 5 H 0.092 0.908 6 C -0.202 4.202 7 N -0.498 5.498 8 Si 0.819 3.181 9 H -0.188 1.188 10 H -0.194 1.194 11 H -0.203 1.203 12 C 0.242 3.758 13 O -0.535 6.535 14 C -0.068 4.068 15 C -0.136 4.136 16 C -0.116 4.116 17 C 0.010 3.990 18 N -0.298 5.298 19 C 0.294 3.706 20 C -0.219 4.219 21 O -0.458 6.458 22 C -0.085 4.085 23 N -0.151 5.151 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.278 0.722 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.616 -11.804 16.387 20.364 hybrid contribution 0.475 0.828 -0.209 0.978 sum -2.141 -10.975 16.178 19.666 Atomic orbital electron populations 1.21690 0.95823 1.00343 0.99049 1.21891 0.95354 0.81115 1.01337 1.44034 1.50571 1.12642 1.05675 1.19830 1.30785 1.12994 0.84121 0.90762 1.26172 0.95830 0.96491 1.01700 1.70167 1.24555 1.27466 1.27657 0.84904 0.78286 0.78532 0.76368 1.18787 1.19354 1.20307 1.18178 0.86936 0.86045 0.84610 1.90533 1.57906 1.17911 1.87148 1.21035 1.00596 0.91636 0.93582 1.21855 0.99157 1.01095 0.91539 1.21462 0.96735 0.95177 0.98232 1.18935 0.97638 0.93832 0.88618 1.43392 1.61635 1.13147 1.11610 1.22119 0.74490 0.87085 0.86946 1.21961 1.06402 1.02923 0.90579 1.90774 1.52323 1.18905 1.83827 1.23482 0.97832 1.02147 0.85084 1.68288 1.09287 1.07713 1.29829 0.95931 0.93492 0.92075 0.91291 0.88914 0.91282 0.85179 0.83540 0.72218 0.86167 0.89045 0.86109 0.77992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.04 9.00 71.98 0.65 -4.39 16 2 C 0.13 6.04 4.86 86.38 0.42 6.46 16 3 N -0.42 -23.46 2.65 -638.91 -1.69 -25.15 16 4 C -0.35 -20.77 9.35 84.12 0.79 -19.99 16 5 H 0.07 4.72 7.37 -2.91 -0.02 4.70 16 6 C 0.00 0.13 5.05 84.97 0.43 0.56 16 7 N -0.86 -44.97 8.38 21.68 0.18 -44.79 16 8 Si 1.00 42.58 29.58 68.60 2.03 44.61 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.45 25.48 7.50 86.76 0.65 26.13 16 13 O -0.64 -40.72 16.00 -4.03 -0.06 -40.78 16 14 C 0.07 3.06 6.44 41.83 0.27 3.33 16 15 C -0.11 -4.56 9.62 22.59 0.22 -4.34 16 16 C -0.09 -2.82 8.75 22.55 0.20 -2.62 16 17 C 0.11 2.74 6.28 38.48 0.24 2.98 16 18 N -0.65 -9.76 5.33 -303.09 -1.62 -11.38 16 19 C 0.50 8.79 7.69 87.66 0.67 9.47 16 20 C -0.16 -0.92 10.32 71.24 0.74 -0.18 16 21 O -0.58 -17.05 14.87 -3.02 -0.04 -17.10 16 22 C 0.08 2.06 11.12 85.03 0.95 3.01 16 23 N -0.44 -16.52 4.21 -184.46 -0.78 -17.29 16 24 H 0.02 1.01 6.54 -2.39 -0.02 0.99 16 25 H 0.05 2.42 6.26 -2.39 -0.01 2.40 16 26 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.07 3.52 5.94 -2.39 -0.01 3.51 16 28 H 0.09 4.07 5.36 -2.43 -0.01 4.06 16 29 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.13 5.43 7.65 -2.91 -0.02 5.41 16 31 H 0.15 4.47 6.58 -2.91 -0.02 4.46 16 32 H 0.44 2.32 8.82 -92.71 -0.82 1.50 16 33 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.09 0.70 8.12 -2.38 -0.02 0.68 16 35 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -81.61 301.73 4.54 -77.06 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.31 Total: 14.42 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.21 Total: 20.40 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -3.90 Total: -98.61 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.11 Total: -57.88 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -81.61 4.54 -77.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359742128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.921 kcal (2) G-P(sol) polarization free energy of solvation -81.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds