Wall clock time and date at job start Mon Mar 30 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21287 * 119.99941 * 2 1 4 4 N 1.34778 * 120.00173 * 180.02562 * 2 1 3 5 5 C 1.39455 * 119.99856 * 183.73031 * 4 2 1 6 6 C 1.39372 * 120.39765 * 35.29514 * 5 4 2 7 7 C 1.38294 * 118.43551 * 179.97438 * 6 5 4 8 8 C 1.39488 * 119.14224 * 0.02562 * 7 6 5 9 9 C 1.47916 * 119.64161 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99918 * 353.89915 * 9 8 7 11 11 N 1.34775 * 120.00139 * 173.89274 * 9 8 7 12 12 C 1.46495 * 120.00149 * 0.39403 * 11 9 8 13 13 C 1.46501 * 119.99848 * 180.38874 * 11 9 8 14 14 C 1.50704 * 109.47128 * 90.00476 * 13 11 9 15 15 H 1.07999 * 119.99441 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00147 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99768 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00281 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46734 * 60.00119 * 18 16 14 20 20 H 1.48492 * 109.47356 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47012 * 300.00501 * 18 16 14 22 22 N 1.32805 * 120.71662 * 359.97438 * 8 7 6 23 23 C 1.31355 * 121.71268 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47128 * 299.99536 * 1 2 3 26 26 H 1.09003 * 109.46734 * 60.00249 * 1 2 3 27 27 H 0.96992 * 120.00139 * 3.72775 * 4 2 1 28 28 H 1.08001 * 120.78405 * 359.95563 * 6 5 4 29 29 H 1.07991 * 120.42837 * 179.72178 * 7 6 5 30 30 H 1.09004 * 109.47439 * 83.91483 * 12 11 9 31 31 H 1.09000 * 109.47211 * 203.92399 * 12 11 9 32 32 H 1.09009 * 109.46972 * 323.91727 * 12 11 9 33 33 H 1.09002 * 109.47168 * 210.00294 * 13 11 9 34 34 H 1.09000 * 109.47485 * 330.00352 * 13 11 9 35 35 H 0.97001 * 119.99763 * 179.97438 * 17 16 14 36 36 H 1.07997 * 119.60656 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5733 -1.1684 0.0781 6 6 4.2373 -0.2113 0.8432 7 6 5.6188 -0.2506 0.8930 8 6 6.2963 -1.2397 0.1800 9 6 7.7739 -1.2917 0.2250 10 8 8.3961 -0.4122 0.7881 11 7 8.4303 -2.3141 -0.3583 12 6 7.6809 -3.3695 -1.0443 13 6 9.8933 -2.3699 -0.3064 14 6 10.3239 -3.1265 0.9237 15 1 9.5818 -3.5255 1.5995 16 6 11.6649 -3.3094 1.1865 17 7 12.5685 -2.8239 0.3632 18 14 12.1986 -4.2466 2.7116 19 1 11.6514 -5.6263 2.6614 20 1 13.6815 -4.3044 2.7635 21 1 11.6869 -3.5549 3.9219 22 7 5.6292 -2.1354 -0.5386 23 6 4.3174 -2.1268 -0.6076 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6976 -2.0063 -0.0555 28 1 3.6860 0.5434 1.3844 29 1 6.1661 0.4781 1.4723 30 1 7.4528 -3.0508 -2.0615 31 1 8.2799 -4.2796 -1.0743 32 1 6.7522 -3.5633 -0.5074 33 1 10.2694 -2.8770 -1.1950 34 1 10.2945 -1.3571 -0.2690 35 1 13.5120 -2.9523 0.5483 36 1 3.8095 -2.8717 -1.2022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360315201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:37 Heat of formation + Delta-G solvation = -12.590724 kcal Electronic energy + Delta-G solvation = -20741.142775 eV Core-core repulsion = 17419.438115 eV Total energy + Delta-G solvation = -3321.704660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09197 -39.73953 -38.14424 -35.39243 -34.84406 -32.68266 -32.16385 -31.26183 -29.36982 -27.56415 -25.83253 -24.35837 -23.69855 -22.45507 -21.03531 -19.39572 -18.20035 -17.42204 -16.65167 -16.49952 -16.43772 -15.64445 -14.99969 -14.77606 -14.61677 -14.45273 -14.14379 -13.53713 -13.44534 -13.21074 -12.99934 -12.72569 -12.33500 -12.19550 -11.99168 -11.73354 -11.17417 -11.01045 -10.79116 -10.55501 -10.43516 -10.11877 -9.79812 -9.62925 -9.43213 -8.82674 -8.45226 -8.38703 -7.53387 -5.99687 -4.04536 0.66814 1.23250 2.13746 2.61710 3.25651 3.35592 3.39425 3.43094 3.88538 4.15727 4.22554 4.39690 4.49300 4.62498 4.67881 4.88033 4.93741 5.07559 5.13585 5.32981 5.34486 5.60704 5.77052 6.00374 6.09259 6.17017 6.32988 6.49917 6.76838 6.89069 7.12999 7.48323 7.58716 7.64759 7.79797 7.97189 8.27402 8.46365 8.91979 9.09380 9.60014 11.08336 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040076 B = 0.003468 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.499938 B = 8071.195839 C = 8153.916118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.524 6.524 4 N -0.668 5.668 5 C 0.099 3.901 6 C -0.085 4.085 7 C -0.094 4.094 8 C 0.080 3.920 9 C 0.552 3.448 10 O -0.538 6.538 11 N -0.577 5.577 12 C 0.085 3.915 13 C 0.242 3.758 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 N -0.429 5.429 23 C 0.070 3.930 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.414 0.586 28 H 0.146 0.854 29 H 0.152 0.848 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.966 -0.027 -2.378 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.297 3.703 3 O -0.398 6.398 4 N -0.315 5.315 5 C 0.002 3.998 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.059 4.059 9 C 0.337 3.663 10 O -0.415 6.415 11 N -0.306 5.306 12 C -0.059 4.059 13 C 0.123 3.877 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 N -0.140 5.140 23 C -0.092 4.092 24 H 0.098 0.902 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.251 0.749 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -24.518 0.586 -2.573 24.659 hybrid contribution -0.457 -0.454 1.162 1.328 sum -24.975 0.132 -1.411 25.015 Atomic orbital electron populations 1.21853 0.90415 1.04676 1.05848 1.21109 0.91014 0.83119 0.75092 1.90789 1.70476 1.31166 1.47407 1.43518 1.04663 1.10100 1.73171 1.18956 0.83776 0.99156 0.97919 1.21518 0.94110 0.98722 0.96900 1.22067 0.93593 0.97950 0.97915 1.21659 0.95631 0.92562 0.96040 1.17702 0.84690 0.83308 0.80587 1.90767 1.67307 1.38874 1.44567 1.48068 1.09666 1.21780 1.51122 1.22120 0.97019 0.90303 0.96444 1.19390 0.72136 0.98866 0.97276 1.21393 0.91910 1.34920 1.08240 0.92454 1.24936 0.96390 0.95891 0.96893 1.69932 1.01098 1.45520 1.36877 0.86538 0.77306 0.80121 0.83340 1.20249 1.21176 1.20166 1.68249 1.07700 1.21572 1.16506 1.22799 0.89948 0.98795 0.97614 0.90187 0.88198 0.88256 0.74949 0.83624 0.83053 0.93816 0.92154 0.89143 0.94655 0.93695 0.92662 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.39 36.01 0.37 -0.21 16 2 C 0.51 4.21 7.70 -10.98 -0.08 4.12 16 3 O -0.52 -6.93 14.88 5.55 0.08 -6.85 16 4 N -0.67 -4.80 5.33 -9.74 -0.05 -4.85 16 5 C 0.10 1.10 6.27 -83.55 -0.52 0.57 16 6 C -0.08 -1.13 8.75 -39.14 -0.34 -1.48 16 7 C -0.09 -1.50 9.62 -39.10 -0.38 -1.88 16 8 C 0.08 1.44 6.62 -83.02 -0.55 0.89 16 9 C 0.55 12.69 7.65 -12.30 -0.09 12.60 16 10 O -0.54 -14.21 15.91 5.31 0.08 -14.12 16 11 N -0.58 -13.41 2.86 -184.04 -0.53 -13.94 16 12 C 0.08 1.56 9.25 59.84 0.55 2.12 16 13 C 0.24 6.64 5.14 -5.19 -0.03 6.62 16 14 C -0.53 -15.40 9.39 -34.44 -0.32 -15.73 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 N -0.43 -6.57 6.02 -9.64 -0.06 -6.63 16 23 C 0.07 0.80 11.12 -17.33 -0.19 0.61 16 24 H 0.08 0.06 7.92 -51.93 -0.41 -0.35 16 25 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.41 1.30 8.66 -40.82 -0.35 0.95 16 28 H 0.15 1.87 6.60 -52.49 -0.35 1.52 16 29 H 0.15 2.42 7.64 -52.49 -0.40 2.02 16 30 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 32 H 0.09 1.53 5.34 -51.94 -0.28 1.25 16 33 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.05 1.37 7.41 -51.93 -0.39 0.98 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -37.24 314.76 -5.94 -43.18 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.25 Total: -2.31 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -1.68 Total: 9.93 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.10 Total: -51.82 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.97 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.24 -5.94 -43.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360315201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.591 kcal (2) G-P(sol) polarization free energy of solvation -37.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds