Wall clock time and date at job start Mon Mar 30 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21287 * 119.99941 * 2 1 4 4 N 1.34778 * 120.00173 * 180.02562 * 2 1 3 5 5 C 1.39455 * 119.99856 * 183.73031 * 4 2 1 6 6 C 1.39372 * 120.39765 * 35.29514 * 5 4 2 7 7 C 1.38294 * 118.43551 * 179.97438 * 6 5 4 8 8 C 1.39488 * 119.14224 * 0.02562 * 7 6 5 9 9 C 1.47916 * 119.64161 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99918 * 353.89915 * 9 8 7 11 11 N 1.34775 * 120.00139 * 173.89274 * 9 8 7 12 12 C 1.46495 * 120.00149 * 0.39403 * 11 9 8 13 13 C 1.46501 * 119.99848 * 180.38874 * 11 9 8 14 14 C 1.50704 * 109.47128 * 90.00476 * 13 11 9 15 15 H 1.07999 * 119.99441 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00147 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99768 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00281 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46734 * 60.00119 * 18 16 14 20 20 H 1.48492 * 109.47356 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47012 * 300.00501 * 18 16 14 22 22 N 1.32805 * 120.71662 * 359.97438 * 8 7 6 23 23 C 1.31355 * 121.71268 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47128 * 299.99536 * 1 2 3 26 26 H 1.09003 * 109.46734 * 60.00249 * 1 2 3 27 27 H 0.96992 * 120.00139 * 3.72775 * 4 2 1 28 28 H 1.08001 * 120.78405 * 359.95563 * 6 5 4 29 29 H 1.07991 * 120.42837 * 179.72178 * 7 6 5 30 30 H 1.09004 * 109.47439 * 83.91483 * 12 11 9 31 31 H 1.09000 * 109.47211 * 203.92399 * 12 11 9 32 32 H 1.09009 * 109.46972 * 323.91727 * 12 11 9 33 33 H 1.09002 * 109.47168 * 210.00294 * 13 11 9 34 34 H 1.09000 * 109.47485 * 330.00352 * 13 11 9 35 35 H 0.97001 * 119.99763 * 179.97438 * 17 16 14 36 36 H 1.07997 * 119.60656 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5733 -1.1684 0.0781 6 6 4.2373 -0.2113 0.8432 7 6 5.6188 -0.2506 0.8930 8 6 6.2963 -1.2397 0.1800 9 6 7.7739 -1.2917 0.2250 10 8 8.3961 -0.4122 0.7881 11 7 8.4303 -2.3141 -0.3583 12 6 7.6809 -3.3695 -1.0443 13 6 9.8933 -2.3699 -0.3064 14 6 10.3239 -3.1265 0.9237 15 1 9.5818 -3.5255 1.5995 16 6 11.6649 -3.3094 1.1865 17 7 12.5685 -2.8239 0.3632 18 14 12.1986 -4.2466 2.7116 19 1 11.6514 -5.6263 2.6614 20 1 13.6815 -4.3044 2.7635 21 1 11.6869 -3.5549 3.9219 22 7 5.6292 -2.1354 -0.5386 23 6 4.3174 -2.1268 -0.6076 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6976 -2.0063 -0.0555 28 1 3.6860 0.5434 1.3844 29 1 6.1661 0.4781 1.4723 30 1 7.4528 -3.0508 -2.0615 31 1 8.2799 -4.2796 -1.0743 32 1 6.7522 -3.5633 -0.5074 33 1 10.2694 -2.8770 -1.1950 34 1 10.2945 -1.3571 -0.2690 35 1 13.5120 -2.9523 0.5483 36 1 3.8095 -2.8717 -1.2022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360315201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:36 Heat of formation + Delta-G solvation = -40.610907 kcal Electronic energy + Delta-G solvation = -20742.357821 eV Core-core repulsion = 17419.438115 eV Total energy + Delta-G solvation = -3322.919706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11263 -40.90847 -39.61462 -36.74994 -36.27720 -34.73906 -33.38520 -32.16590 -30.37404 -29.31606 -27.43549 -25.89188 -24.94311 -24.00994 -21.86464 -20.95856 -19.06736 -18.71392 -18.40567 -18.07490 -17.55402 -16.86355 -16.51776 -16.36097 -16.04627 -15.65131 -15.24337 -14.82646 -14.74188 -14.41662 -14.21656 -13.78822 -13.69024 -13.43290 -13.28085 -13.11507 -13.03425 -12.81482 -12.54950 -12.21728 -11.93586 -11.70128 -11.30449 -11.18418 -10.84833 -10.65135 -10.20169 -9.53533 -9.34564 -8.23148 -6.39018 -0.50958 0.15685 1.36234 1.40191 1.41693 1.49286 1.83010 1.97594 2.22608 2.41327 2.80013 3.05661 3.15582 3.61432 3.71904 3.78225 3.90188 4.07954 4.53594 4.57418 4.62665 4.68637 4.74472 4.85383 4.85793 4.99420 5.03418 5.15808 5.19275 5.25589 5.54322 5.62751 5.82764 6.02922 6.33085 6.55122 6.69143 6.74301 7.05317 7.21160 7.36761 8.84130 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040076 B = 0.003468 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.499938 B = 8071.195839 C = 8153.916118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.505 3.495 3 O -0.577 6.577 4 N -0.649 5.649 5 C 0.123 3.877 6 C -0.091 4.091 7 C -0.098 4.098 8 C 0.049 3.951 9 C 0.544 3.456 10 O -0.591 6.591 11 N -0.587 5.587 12 C 0.088 3.912 13 C 0.256 3.744 14 C -0.546 4.546 15 H 0.053 0.947 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.972 3.028 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.277 1.277 22 N -0.436 5.436 23 C 0.084 3.916 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.439 0.561 28 H 0.150 0.850 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.028 0.972 34 H 0.000 1.000 35 H 0.269 0.731 36 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.763 -2.220 -2.376 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.296 3.704 3 O -0.456 6.456 4 N -0.298 5.298 5 C 0.025 3.975 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.087 4.087 9 C 0.332 3.668 10 O -0.472 6.472 11 N -0.316 5.316 12 C -0.054 4.054 13 C 0.135 3.865 14 C -0.585 4.585 15 H 0.071 0.929 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.796 3.204 19 H -0.183 1.183 20 H -0.200 1.200 21 H -0.203 1.203 22 N -0.148 5.148 23 C -0.079 4.079 24 H 0.135 0.865 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.280 0.720 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.078 0.922 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -28.380 -1.666 -2.594 28.547 hybrid contribution 0.491 0.275 1.083 1.220 sum -27.890 -1.392 -1.511 27.965 Atomic orbital electron populations 1.21912 0.86067 1.07363 1.06437 1.22103 0.92914 0.82186 0.73202 1.90787 1.71872 1.33196 1.49715 1.43544 1.02815 1.11465 1.71979 1.19057 0.85850 0.97279 0.95333 1.21554 0.92869 0.99778 0.97703 1.21940 0.94810 0.97347 0.97896 1.20807 0.92722 0.95427 0.99746 1.18452 0.87032 0.82145 0.79206 1.90708 1.69202 1.40615 1.46720 1.48094 1.08266 1.23307 1.51912 1.22331 0.97113 0.88723 0.97242 1.18896 0.75140 0.95836 0.96595 1.21632 0.92443 1.35519 1.08883 0.92921 1.25907 0.96260 0.96667 1.00312 1.70055 1.01576 1.46376 1.38757 0.85403 0.77294 0.79196 0.78530 1.18327 1.20041 1.20253 1.68032 1.09723 1.20911 1.16107 1.23547 0.88377 0.99179 0.96831 0.86514 0.87527 0.87536 0.71960 0.83279 0.84607 0.91976 0.92509 0.87005 0.95413 0.98151 0.92238 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.39 10.39 71.24 0.74 0.35 16 2 C 0.50 6.63 7.70 87.66 0.68 7.31 16 3 O -0.58 -14.35 14.88 -3.05 -0.05 -14.40 16 4 N -0.65 -6.41 5.33 -303.11 -1.62 -8.02 16 5 C 0.12 2.34 6.27 38.47 0.24 2.58 16 6 C -0.09 -2.36 8.75 22.56 0.20 -2.16 16 7 C -0.10 -3.25 9.62 22.58 0.22 -3.03 16 8 C 0.05 1.82 6.62 41.86 0.28 2.10 16 9 C 0.54 26.44 7.65 86.81 0.66 27.11 16 10 O -0.59 -33.78 15.91 -3.90 -0.06 -33.85 16 11 N -0.59 -28.50 2.86 -854.46 -2.44 -30.95 16 12 C 0.09 3.21 9.25 127.77 1.18 4.40 16 13 C 0.26 14.90 5.14 85.63 0.44 15.34 16 14 C -0.55 -33.18 9.39 25.60 0.24 -32.94 16 15 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 16 C 0.01 0.45 5.46 84.65 0.46 0.92 16 17 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 18 Si 0.97 46.15 29.54 68.60 2.03 48.18 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 N -0.44 -12.58 6.02 -184.43 -1.11 -13.69 16 23 C 0.08 1.58 11.12 85.04 0.95 2.52 16 24 H 0.12 -0.55 7.92 -2.39 -0.02 -0.57 16 25 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.44 0.12 8.66 -92.71 -0.80 -0.68 16 28 H 0.15 3.76 6.60 -2.91 -0.02 3.74 16 29 H 0.14 4.77 7.64 -2.92 -0.02 4.75 16 30 H 0.06 2.03 8.13 -2.38 -0.02 2.01 16 31 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 32 H 0.11 3.62 5.34 -2.41 -0.01 3.61 16 33 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.00 0.02 7.41 -2.39 -0.02 0.01 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 36 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -87.81 314.76 3.63 -84.17 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 0.31 Total: 1.64 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 6.28 Total: 24.49 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.88 Total: -110.23 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.11 Total: -48.24 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -87.81 3.63 -84.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360315201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.561 kcal (2) G-P(sol) polarization free energy of solvation -87.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds