Wall clock time and date at job start Mon Mar 30 2020 01:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21293 * 120.00012 * 2 1 4 4 N 1.34773 * 120.00008 * 180.02562 * 2 1 3 5 5 C 1.40066 * 120.00051 * 184.26710 * 4 2 1 6 6 C 1.38964 * 120.51410 * 325.77563 * 5 4 2 7 7 C 1.38732 * 118.42935 * 180.23861 * 6 5 4 8 8 C 1.38112 * 119.37502 * 359.46558 * 7 6 5 9 9 N 1.31955 * 120.98557 * 0.29456 * 8 7 6 10 10 C 1.32256 * 121.71060 * 359.97438 * 9 8 7 11 11 N 1.39529 * 119.74052 * 179.97438 * 10 9 8 12 12 C 1.34782 * 119.99423 * 0.02562 * 11 10 9 13 13 O 1.21278 * 120.00182 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99657 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47217 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47217 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00167 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99930 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99905 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99815 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46911 * 90.00089 * 20 18 16 22 22 H 1.48496 * 109.47355 * 209.99978 * 20 18 16 23 23 H 1.48498 * 109.47387 * 330.00249 * 20 18 16 24 24 H 1.09002 * 109.47048 * 270.00048 * 1 2 3 25 25 H 1.09004 * 109.47389 * 29.99662 * 1 2 3 26 26 H 1.09000 * 109.47498 * 150.00322 * 1 2 3 27 27 H 0.97003 * 120.00142 * 4.26197 * 4 2 1 28 28 H 1.07992 * 120.78103 * 359.97438 * 6 5 4 29 29 H 1.08005 * 120.30885 * 179.73728 * 7 6 5 30 30 H 1.08001 * 119.50345 * 180.27173 * 8 7 6 31 31 H 0.96996 * 120.00387 * 179.97438 * 11 10 9 32 32 H 1.09007 * 109.47011 * 299.99793 * 14 12 11 33 33 H 1.08997 * 109.47286 * 59.99402 * 14 12 11 34 34 H 1.09002 * 109.46502 * 299.99673 * 15 14 12 35 35 H 1.08997 * 109.47492 * 59.99514 * 15 14 12 36 36 H 0.96997 * 119.99340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5786 -1.1689 0.0897 6 6 4.3249 -0.1552 -0.4990 7 6 5.7069 -0.2024 -0.3872 8 6 6.2953 -1.2399 0.3091 9 7 5.5631 -2.1876 0.8632 10 6 4.2433 -2.1859 0.7776 11 7 3.5093 -3.2090 1.3788 12 6 4.1456 -4.1935 2.0440 13 8 5.3561 -4.1903 2.1195 14 6 3.3530 -5.2988 2.6928 15 6 4.3090 -6.2784 3.3764 16 6 3.5164 -7.3834 4.0258 17 1 2.4385 -7.3865 3.9581 18 6 4.1672 -8.3905 4.7064 19 7 5.4798 -8.3870 4.7884 20 14 3.1846 -9.7598 5.5119 21 1 3.0000 -10.8715 4.5448 22 1 3.9154 -10.2577 6.7049 23 1 1.8573 -9.2388 5.9264 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6979 -2.0061 -0.0633 28 1 3.8407 0.6479 -1.0345 29 1 6.3167 0.5674 -0.8368 30 1 7.3708 -1.2763 0.4012 31 1 2.5412 -3.2113 1.3186 32 1 2.6770 -4.8738 3.4349 33 1 2.7745 -5.8251 1.9336 34 1 4.9853 -6.7034 2.6347 35 1 4.8871 -5.7519 4.1357 36 1 5.9376 -9.0954 5.2675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362082232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:45 Heat of formation + Delta-G solvation = -26.740936 kcal Electronic energy + Delta-G solvation = -20591.957398 eV Core-core repulsion = 17269.639139 eV Total energy + Delta-G solvation = -3322.318259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24636 -39.71499 -38.59106 -35.56385 -34.44936 -33.49731 -31.99332 -31.20414 -30.36084 -28.71875 -25.94365 -24.23373 -23.18304 -21.52880 -20.93952 -19.90442 -18.53335 -17.50376 -17.19677 -16.93001 -16.14059 -15.64538 -15.26011 -15.15088 -14.90411 -14.46472 -14.32005 -13.94318 -13.45828 -13.11244 -13.06546 -12.78562 -12.40059 -12.37152 -12.20805 -11.24243 -11.06232 -10.97221 -10.65107 -10.63365 -10.43319 -10.01741 -9.82800 -9.62108 -9.28058 -9.15093 -8.72869 -8.35493 -7.92587 -5.98834 -4.03861 0.96565 1.31342 2.22372 2.64721 2.99929 3.14665 3.31348 3.37745 3.39930 3.92665 4.29909 4.42834 4.50922 4.73548 4.76962 4.95008 5.01538 5.08393 5.30463 5.36186 5.41823 5.44602 5.73569 6.02170 6.10518 6.10995 6.13909 6.32031 6.74812 6.81464 6.93793 7.36594 7.70156 7.70975 7.80715 8.02908 8.14090 8.33932 8.66042 9.04219 9.59895 11.12036 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.003610 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.599385 B = 7754.647294 C = 8804.318850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.529 6.529 4 N -0.668 5.668 5 C 0.043 3.957 6 C -0.051 4.051 7 C -0.198 4.198 8 C 0.121 3.879 9 N -0.459 5.459 10 C 0.357 3.643 11 N -0.672 5.672 12 C 0.496 3.504 13 O -0.459 6.459 14 C -0.127 4.127 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.409 0.591 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.160 0.840 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 16.753 -12.658 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.405 6.405 4 N -0.315 5.315 5 C -0.056 4.056 6 C -0.079 4.079 7 C -0.220 4.220 8 C -0.037 4.037 9 N -0.173 5.173 10 C 0.122 3.878 11 N -0.320 5.320 12 C 0.284 3.716 13 O -0.325 6.325 14 C -0.167 4.167 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.526 5.526 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.245 0.755 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.966 16.618 -11.969 21.974 hybrid contribution -1.668 -0.522 -0.047 1.748 sum -9.633 16.096 -12.016 22.277 Atomic orbital electron populations 1.21900 0.90401 1.05364 1.05424 1.21048 0.90928 0.82969 0.75028 1.90723 1.70457 1.31234 1.48040 1.43459 1.04616 1.09976 1.73444 1.18156 0.83425 0.99543 1.04501 1.21474 0.93404 0.97259 0.95748 1.21977 0.94732 1.01266 1.03986 1.22724 1.00257 0.88641 0.92122 1.67797 1.03352 1.25945 1.20196 1.18529 0.89132 0.88593 0.91549 1.44140 1.09925 1.23970 1.53926 1.21945 0.89650 0.82200 0.77837 1.90790 1.13901 1.73572 1.54273 1.21927 1.00393 0.94431 0.99937 1.18926 0.93503 0.92004 0.95709 1.21180 0.93068 1.08282 1.34196 0.92569 1.25026 0.94857 0.98111 0.96353 1.69998 1.07212 1.33334 1.42084 0.86580 0.80006 0.82279 0.79007 1.20662 1.21201 1.19892 0.88201 0.88424 0.89724 0.75496 0.83328 0.84590 0.82281 0.75701 0.89974 0.89940 0.95634 0.95647 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.31 36.01 0.37 -0.38 16 2 C 0.51 4.60 7.80 -10.99 -0.09 4.52 16 3 O -0.53 -6.91 14.55 5.55 0.08 -6.83 16 4 N -0.67 -5.80 5.03 -9.63 -0.05 -5.85 16 5 C 0.04 0.53 6.35 -83.31 -0.53 0.00 16 6 C -0.05 -0.62 8.81 -39.13 -0.34 -0.97 16 7 C -0.20 -2.26 10.10 -39.44 -0.40 -2.66 16 8 C 0.12 1.65 11.17 -17.54 -0.20 1.45 16 9 N -0.46 -8.03 7.87 -12.20 -0.10 -8.12 16 10 C 0.36 5.44 7.45 -154.45 -1.15 4.29 16 11 N -0.67 -9.65 5.38 -11.27 -0.06 -9.71 16 12 C 0.50 9.52 7.79 -10.98 -0.09 9.43 16 13 O -0.46 -10.97 14.24 5.56 0.08 -10.89 16 14 C -0.13 -2.45 5.64 -27.89 -0.16 -2.61 16 15 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.41 2.22 7.71 -40.82 -0.31 1.91 16 28 H 0.15 1.76 6.27 -52.49 -0.33 1.43 16 29 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 30 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.41 3.98 7.29 -40.82 -0.30 3.68 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -38.25 315.80 -6.96 -45.21 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.28 Total: 1.04 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.11 Total: 0.48 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.53 Total: -50.11 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -38.25 -6.96 -45.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362082232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.473 kcal (2) G-P(sol) polarization free energy of solvation -38.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds