Wall clock time and date at job start Mon Mar 30 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34722 * 117.00085 * 2 1 4 4 O 1.21473 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.47733 * 119.99868 * 180.02562 * 3 2 1 6 6 C 1.40118 * 120.09828 * 179.97438 * 5 3 2 7 7 C 1.38280 * 117.99259 * 179.76985 * 6 5 3 8 8 C 1.39614 * 118.03195 * 0.48787 * 7 6 5 9 9 N 1.38469 * 120.04098 * 179.78228 * 8 7 6 10 10 C 1.46499 * 120.00220 * 359.72026 * 9 8 7 11 11 C 1.53004 * 109.46736 * 184.87395 * 10 9 8 12 12 C 1.50691 * 115.55324 * 320.20820 * 11 10 9 13 13 H 1.08003 * 120.00429 * 99.47966 * 12 11 10 14 14 C 1.37882 * 119.99991 * 279.48501 * 12 11 10 15 15 N 1.31511 * 120.00013 * 355.01013 * 14 12 11 16 16 Si 1.86798 * 120.00052 * 175.01770 * 14 12 11 17 17 H 1.48507 * 109.47189 * 89.99655 * 16 14 12 18 18 H 1.48502 * 109.47186 * 209.99381 * 16 14 12 19 19 H 1.48501 * 109.47093 * 329.99680 * 16 14 12 20 20 C 1.53008 * 117.49476 * 174.53921 * 11 10 9 21 21 C 1.53001 * 60.03129 * 252.50041 * 20 11 10 22 22 N 1.32875 * 119.90822 * 359.50347 * 8 7 6 23 23 N 1.28355 * 122.16909 * 0.25525 * 22 8 7 24 24 H 1.09002 * 109.46966 * 299.99869 * 1 2 3 25 25 H 1.09000 * 109.46798 * 59.99507 * 1 2 3 26 26 H 1.08993 * 109.47452 * 180.02562 * 1 2 3 27 27 H 1.07996 * 121.00730 * 0.02562 * 6 5 3 28 28 H 1.08005 * 120.98465 * 180.24213 * 7 6 5 29 29 H 0.97003 * 119.99898 * 179.72886 * 9 8 7 30 30 H 1.08995 * 109.47129 * 64.87339 * 10 9 8 31 31 H 1.08998 * 109.47157 * 304.87393 * 10 9 8 32 32 H 0.97000 * 120.00679 * 185.00282 * 15 14 12 33 33 H 1.09001 * 117.49647 * 359.97438 * 20 11 10 34 34 H 1.09001 * 117.49842 * 144.99674 * 20 11 10 35 35 H 1.08994 * 117.50090 * 107.50382 * 21 20 11 36 36 H 1.09007 * 117.49527 * 252.52604 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.1773 2.5250 -0.0011 7 6 5.5599 2.5465 0.0033 8 6 6.2352 1.3246 -0.0025 9 7 7.6196 1.2976 -0.0030 10 6 8.3768 2.5518 -0.0036 11 6 9.8708 2.2455 -0.1266 12 6 10.3570 1.0549 0.6588 13 1 10.5026 0.1053 0.1654 14 6 10.6160 1.1779 2.0075 15 7 10.5335 2.3549 2.5883 16 14 11.0843 -0.3274 3.0097 17 1 12.5600 -0.4928 2.9944 18 1 10.6202 -0.1540 4.4096 19 1 10.4450 -1.5319 2.4218 20 6 10.8253 3.4321 -0.2743 21 6 10.5414 2.5257 -1.4738 22 7 5.5476 0.1876 -0.0020 23 7 4.2642 0.1651 -0.0011 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.6067 3.4419 -0.0007 28 1 6.1015 3.4810 0.0070 29 1 8.0882 0.4482 -0.0031 30 1 8.1913 3.0886 0.9267 31 1 8.0612 3.1663 -0.8468 32 1 10.7856 2.4551 3.5196 33 1 10.3889 4.4309 -0.2843 34 1 11.8050 3.3516 0.1967 35 1 9.9184 2.9282 -2.2724 36 1 11.3343 1.8485 -1.7917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362360360.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:37 Heat of formation + Delta-G solvation = -13.684079 kcal Electronic energy + Delta-G solvation = -20637.114547 eV Core-core repulsion = 17315.362476 eV Total energy + Delta-G solvation = -3321.752071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19763 -41.07242 -38.99014 -37.58656 -36.55789 -34.12170 -34.02598 -32.20345 -28.99099 -27.85097 -27.34840 -25.65658 -24.74152 -22.87050 -22.53794 -21.24282 -19.71750 -18.62983 -18.34099 -18.08441 -17.61336 -17.51880 -16.69987 -16.19887 -15.96402 -15.49478 -15.13188 -15.00908 -14.49368 -14.41155 -14.22456 -14.08745 -13.53872 -13.10736 -13.00189 -12.87384 -12.77859 -12.40138 -12.10862 -11.82328 -11.79944 -11.76233 -11.34981 -11.33560 -10.97039 -10.71334 -10.45075 -9.99833 -9.01223 -8.14810 -6.26701 -0.46252 -0.14965 1.31571 1.38245 1.44607 1.50316 1.53951 2.06157 2.39873 2.62472 3.11548 3.18072 3.46758 3.57483 3.66330 3.81638 3.98666 4.19000 4.31142 4.37655 4.49561 4.56262 4.65723 4.67811 4.73059 4.83309 4.90353 5.04060 5.08742 5.19741 5.28399 5.46739 5.68177 5.74977 6.04916 6.35751 6.53911 6.60895 6.80561 7.43727 7.66076 8.91177 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.003987 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.891840 B = 7021.747022 C = 7671.814396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.545 3.455 4 O -0.521 6.521 5 C -0.064 4.064 6 C -0.011 4.011 7 C -0.188 4.188 8 C 0.358 3.642 9 N -0.663 5.663 10 C 0.169 3.831 11 C 0.001 3.999 12 C -0.510 4.510 13 H 0.055 0.945 14 C 0.041 3.959 15 N -0.895 5.895 16 Si 0.933 3.067 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.270 1.270 20 C -0.151 4.151 21 C -0.186 4.186 22 N -0.341 5.341 23 N -0.154 5.154 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.185 0.815 28 H 0.178 0.822 29 H 0.413 0.587 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.260 0.740 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 1.536 -5.603 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.388 3.612 4 O -0.409 6.409 5 C -0.214 4.214 6 C -0.038 4.038 7 C -0.221 4.221 8 C 0.114 3.886 9 N -0.289 5.289 10 C 0.045 3.955 11 C 0.000 4.000 12 C -0.548 4.548 13 H 0.073 0.927 14 C -0.161 4.161 15 N -0.532 5.532 16 Si 0.761 3.239 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.194 1.194 20 C -0.189 4.189 21 C -0.223 4.223 22 N -0.199 5.199 23 N -0.003 5.003 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.150 0.850 27 H 0.202 0.798 28 H 0.195 0.805 29 H 0.251 0.749 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.585 0.500 -5.407 14.630 hybrid contribution 0.702 0.432 0.955 1.262 sum -12.883 0.932 -4.452 13.663 Atomic orbital electron populations 1.23677 0.73861 1.06011 1.03067 1.86675 1.25495 1.31219 1.83122 1.20224 0.87098 0.81894 0.71951 1.90816 1.66094 1.36405 1.47567 1.21381 0.92590 0.92953 1.14470 1.22254 0.93861 0.98429 0.89270 1.22042 0.94478 0.98770 1.06805 1.20593 0.87703 0.92234 0.88052 1.44923 1.00254 1.11697 1.71988 1.21033 0.91091 0.83336 1.00018 1.19056 0.89307 0.96319 0.95326 1.20581 1.45773 0.95550 0.92868 0.92717 1.25464 0.94770 0.97359 0.98553 1.70024 1.47149 1.23454 1.12578 0.85928 0.78380 0.81398 0.78245 1.20440 1.21699 1.19409 1.22449 1.00657 0.94558 1.01234 1.23105 1.03969 1.03691 0.91574 1.73220 1.00333 1.23773 1.22606 1.73014 0.99341 1.26182 1.01799 0.91360 0.91170 0.85048 0.79767 0.80463 0.74922 0.92840 0.90609 0.93093 0.89875 0.92260 0.88586 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.35 -9.13 10.39 -56.32 -0.59 -9.71 16 3 C 0.55 15.58 7.94 70.33 0.56 16.14 16 4 O -0.52 -15.27 16.17 19.92 0.32 -14.95 16 5 C -0.06 -1.96 6.83 41.97 0.29 -1.67 16 6 C -0.01 -0.29 9.71 22.74 0.22 -0.06 16 7 C -0.19 -5.18 9.37 22.61 0.21 -4.97 16 8 C 0.36 12.31 7.74 133.22 1.03 13.34 16 9 N -0.66 -24.24 5.53 -344.76 -1.91 -26.14 16 10 C 0.17 6.08 5.03 86.38 0.43 6.51 16 11 C 0.00 0.03 1.74 -52.90 -0.09 -0.07 16 12 C -0.51 -24.49 7.36 25.60 0.19 -24.30 16 13 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 14 C 0.04 2.04 5.44 84.66 0.46 2.50 16 15 N -0.90 -46.54 12.86 21.45 0.28 -46.27 16 16 Si 0.93 41.13 29.54 68.60 2.03 43.15 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C -0.15 -6.03 9.43 30.60 0.29 -5.74 16 21 C -0.19 -6.72 9.89 30.62 0.30 -6.42 16 22 N -0.34 -12.80 11.55 -55.17 -0.64 -13.44 16 23 N -0.15 -5.47 11.30 -48.54 -0.55 -6.02 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.19 3.62 7.71 -2.91 -0.02 3.60 16 28 H 0.18 3.98 6.79 -2.91 -0.02 3.96 16 29 H 0.41 16.39 7.47 -92.71 -0.69 15.70 16 30 H 0.05 2.10 8.12 -2.39 -0.02 2.08 16 31 H 0.08 2.24 7.51 -2.39 -0.02 2.22 16 32 H 0.26 13.21 8.32 -92.71 -0.77 12.44 16 33 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.10 2.91 8.08 -2.39 -0.02 2.89 16 36 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -58.46 320.38 4.45 -54.00 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.42 Total: 22.49 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.09 Total: -3.11 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -2.82 Total: -91.87 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.26 Total: -24.66 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -58.46 4.45 -54.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362360360.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.321 kcal (2) G-P(sol) polarization free energy of solvation -58.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds