Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35665 * 117.00143 * 2 1 4 4 C 1.39498 * 120.01304 * 185.08421 * 3 2 1 5 5 N 1.31949 * 120.11240 * 179.97438 * 4 3 2 6 6 C 1.32196 * 120.14408 * 359.72395 * 5 4 3 7 7 C 1.39237 * 120.02018 * 0.53170 * 6 5 4 8 8 C 1.48128 * 120.05729 * 179.75206 * 7 6 5 9 9 O 1.21524 * 119.99614 * 5.26018 * 8 7 6 10 10 N 1.34775 * 120.00484 * 185.25528 * 8 7 6 11 11 C 1.46496 * 120.00223 * 185.12486 * 10 8 7 12 12 C 1.53001 * 109.47346 * 184.41894 * 11 10 8 13 13 C 1.50704 * 115.54771 * 295.14285 * 12 11 10 14 14 H 1.07993 * 120.00246 * 95.31891 * 13 12 11 15 15 C 1.37881 * 119.99430 * 275.31491 * 13 12 11 16 16 N 1.31510 * 120.00297 * 9.12678 * 15 13 12 17 17 Si 1.86803 * 119.99583 * 189.12951 * 15 13 12 18 18 H 1.48497 * 109.46789 * 184.99574 * 17 15 13 19 19 H 1.48506 * 109.46971 * 304.98949 * 17 15 13 20 20 H 1.48490 * 109.47410 * 64.99031 * 17 15 13 21 21 C 1.53001 * 117.49963 * 80.80718 * 12 11 10 22 22 C 1.53005 * 117.50239 * 149.46692 * 12 11 10 23 23 N 1.32161 * 120.01322 * 5.06117 * 3 2 1 24 24 H 1.08999 * 109.47535 * 64.41307 * 1 2 3 25 25 H 1.09007 * 109.47322 * 184.41817 * 1 2 3 26 26 H 1.09000 * 109.47128 * 304.41406 * 1 2 3 27 27 H 1.08000 * 119.94006 * 359.95405 * 4 3 2 28 28 H 1.07999 * 119.98908 * 180.27927 * 6 5 4 29 29 H 0.97003 * 119.99931 * 5.12845 * 10 8 7 30 30 H 1.09003 * 109.47529 * 64.41630 * 11 10 8 31 31 H 1.09005 * 109.47295 * 304.41604 * 11 10 8 32 32 H 0.96998 * 120.00106 * 357.19384 * 16 15 13 33 33 H 1.09002 * 117.49715 * 215.00857 * 21 12 11 34 34 H 1.08998 * 117.49806 * 0.02566 * 21 12 11 35 35 H 1.08996 * 117.49348 * 359.97438 * 22 12 11 36 36 H 1.08995 * 117.49154 * 144.97366 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4337 1.2842 -0.1070 5 7 4.0348 2.4589 -0.1078 6 6 3.3231 3.5688 -0.0125 7 6 1.9369 3.5000 0.0999 8 6 1.1391 4.7430 0.2122 9 8 1.6827 5.8252 0.1103 10 7 -0.1896 4.6740 0.4272 11 6 -0.9963 5.8968 0.4264 12 6 -2.4400 5.5556 0.8008 13 6 -3.1751 4.6770 -0.1784 14 1 -3.2122 3.6089 -0.0233 15 6 -3.8004 5.2370 -1.2723 16 7 -3.6082 6.5054 -1.5618 17 14 -4.9207 4.1940 -2.3430 18 1 -5.3699 4.9909 -3.5128 19 1 -4.1801 2.9964 -2.8149 20 1 -6.1025 3.7655 -1.5527 21 6 -2.7623 5.3813 2.2863 22 6 -3.2502 6.6241 1.5377 23 7 1.3293 2.3153 0.1010 24 1 -0.3634 0.4438 -0.9269 25 1 -0.3634 -1.0247 0.0792 26 1 -0.3633 0.5808 0.8478 27 1 4.0179 0.3796 -0.1891 28 1 3.8172 4.5291 -0.0179 29 1 -0.6117 3.8145 0.5826 30 1 -0.9749 6.3456 -0.5667 31 1 -0.5895 6.6010 1.1522 32 1 -3.0592 7.0572 -0.9829 33 1 -3.5060 4.6311 2.5553 34 1 -1.9459 5.5101 2.9969 35 1 -2.7545 7.5699 1.7560 36 1 -4.3148 6.6918 1.3138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431158332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = -3.190671 kcal Electronic energy + Delta-G solvation = -21230.619780 eV Core-core repulsion = 17909.322737 eV Total energy + Delta-G solvation = -3321.297043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51128 -39.27180 -38.35817 -37.02726 -34.48413 -33.37747 -31.99454 -31.28109 -27.81824 -26.93143 -25.16488 -24.62004 -23.73515 -21.48734 -20.63227 -19.77890 -18.49746 -18.32466 -16.95997 -16.94801 -16.44792 -16.19609 -15.37832 -15.00972 -14.63469 -14.29445 -13.89348 -13.81904 -13.39942 -13.12355 -12.85751 -12.44076 -12.22273 -11.86362 -11.79971 -11.68523 -11.04048 -11.02479 -10.86154 -10.56596 -10.32292 -10.19303 -9.76842 -9.32709 -8.95936 -8.79117 -8.57194 -8.48657 -8.31236 -6.46425 -4.21844 0.30242 0.91307 2.70952 2.85287 3.29567 3.35587 3.36582 3.55573 3.73319 3.85449 4.13176 4.29426 4.41783 4.92283 4.99769 5.13063 5.18090 5.21340 5.24094 5.27220 5.55963 5.74190 5.88704 6.06559 6.15801 6.27438 6.46121 6.53359 6.77163 6.78288 6.87569 6.98539 7.09776 7.16592 7.45136 8.01596 8.10098 8.27976 8.51399 8.74728 9.53829 10.92818 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.005557 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.252013 B = 5037.823176 C = 5883.389977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.275 3.725 4 C 0.059 3.941 5 N -0.407 5.407 6 C 0.060 3.940 7 C 0.087 3.913 8 C 0.560 3.440 9 O -0.540 6.540 10 N -0.673 5.673 11 C 0.154 3.846 12 C 0.003 3.997 13 C -0.578 4.578 14 H 0.053 0.947 15 C 0.030 3.970 16 N -0.897 5.897 17 Si 1.065 2.935 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.287 1.287 21 C -0.193 4.193 22 C -0.169 4.169 23 N -0.470 5.470 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.181 0.819 28 H 0.186 0.814 29 H 0.412 0.588 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.275 0.725 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -10.754 4.000 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.205 6.205 3 C 0.090 3.910 4 C -0.106 4.106 5 N -0.121 5.121 6 C -0.098 4.098 7 C -0.053 4.053 8 C 0.342 3.658 9 O -0.418 6.418 10 N -0.321 5.321 11 C 0.031 3.969 12 C 0.002 3.998 13 C -0.615 4.615 14 H 0.072 0.928 15 C -0.177 4.177 16 N -0.531 5.531 17 Si 0.894 3.106 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.231 4.231 22 C -0.208 4.208 23 N -0.202 5.202 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.198 0.802 28 H 0.203 0.797 29 H 0.248 0.752 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.431 -10.148 2.537 13.435 hybrid contribution 0.330 -0.407 1.477 1.567 sum 8.762 -10.555 4.014 14.293 Atomic orbital electron populations 1.23048 0.76151 1.03629 1.03473 1.86252 1.23725 1.23107 1.87422 1.20985 0.91062 0.85535 0.93452 1.23176 0.89766 0.97777 0.99924 1.68604 1.37879 0.97689 1.07879 1.23628 0.90815 0.98527 0.96870 1.22165 0.93508 0.91683 0.97964 1.17654 0.82833 0.86580 0.78729 1.90778 1.71278 1.27742 1.52023 1.45795 1.05978 1.12674 1.67661 1.21214 0.90436 0.84278 1.00993 1.19319 0.90852 0.99011 0.90573 1.21160 1.36583 0.93556 1.10224 0.92839 1.25765 0.97215 0.97887 0.96793 1.70751 1.37558 1.06966 1.37782 0.83588 0.76016 0.74850 0.76180 1.20760 1.21517 1.21376 1.22897 1.02723 1.01118 0.96314 1.22755 1.00465 0.91885 1.05647 1.68039 1.39843 0.98153 1.14189 0.91702 0.88066 0.91403 0.80235 0.79721 0.75222 0.91301 0.93501 0.91340 0.89967 0.91380 0.91201 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.49 101.05 1.06 1.39 16 2 O -0.30 -3.51 10.49 -18.70 -0.20 -3.71 16 3 C 0.27 3.58 7.49 -16.94 -0.13 3.46 16 4 C 0.06 0.67 11.18 -17.03 -0.19 0.48 16 5 N -0.41 -5.28 10.48 -12.58 -0.13 -5.41 16 6 C 0.06 0.84 10.76 -17.02 -0.18 0.66 16 7 C 0.09 1.39 6.75 -82.87 -0.56 0.84 16 8 C 0.56 10.58 7.80 -12.20 -0.10 10.49 16 9 O -0.54 -11.32 16.34 5.34 0.09 -11.23 16 10 N -0.67 -13.31 5.45 -61.16 -0.33 -13.64 16 11 C 0.15 3.38 5.39 -4.04 -0.02 3.35 16 12 C 0.00 0.08 0.93 -155.65 -0.14 -0.07 16 13 C -0.58 -14.72 8.57 -34.44 -0.30 -15.02 16 14 H 0.05 1.36 7.83 -52.49 -0.41 0.95 16 15 C 0.03 0.81 5.37 -17.82 -0.10 0.71 16 16 N -0.90 -25.39 13.56 55.43 0.75 -24.63 16 17 Si 1.07 23.80 29.91 -169.99 -5.08 18.71 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.19 -3.91 9.96 -26.69 -0.27 -4.18 16 22 C -0.17 -3.68 8.90 -26.69 -0.24 -3.92 16 23 N -0.47 -7.14 8.54 -9.69 -0.08 -7.22 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 27 H 0.18 1.42 8.06 -52.49 -0.42 0.99 16 28 H 0.19 2.39 7.65 -52.49 -0.40 1.98 16 29 H 0.41 7.91 7.71 -40.82 -0.31 7.60 16 30 H 0.07 1.70 7.66 -51.93 -0.40 1.30 16 31 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 32 H 0.28 7.74 6.17 -40.82 -0.25 7.49 16 33 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -29.48 319.61 -5.69 -35.17 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.36 Total: 8.95 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.15 Total: -1.80 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.20 Total: -50.91 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.11 Total: -14.94 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.08 Total: 18.71 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.48 -5.69 -35.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.984 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds