Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35665 * 117.00143 * 2 1 4 4 C 1.39498 * 120.01304 * 185.08421 * 3 2 1 5 5 N 1.31949 * 120.11240 * 179.97438 * 4 3 2 6 6 C 1.32196 * 120.14408 * 359.72395 * 5 4 3 7 7 C 1.39237 * 120.02018 * 0.53170 * 6 5 4 8 8 C 1.48128 * 120.05729 * 179.75206 * 7 6 5 9 9 O 1.21524 * 119.99614 * 5.26018 * 8 7 6 10 10 N 1.34775 * 120.00484 * 185.25528 * 8 7 6 11 11 C 1.46496 * 120.00223 * 185.12486 * 10 8 7 12 12 C 1.53001 * 109.47346 * 184.41894 * 11 10 8 13 13 C 1.50704 * 115.54771 * 295.14285 * 12 11 10 14 14 H 1.07993 * 120.00246 * 95.31891 * 13 12 11 15 15 C 1.37881 * 119.99430 * 275.31491 * 13 12 11 16 16 N 1.31510 * 120.00297 * 9.12678 * 15 13 12 17 17 Si 1.86803 * 119.99583 * 189.12951 * 15 13 12 18 18 H 1.48497 * 109.46789 * 184.99574 * 17 15 13 19 19 H 1.48506 * 109.46971 * 304.98949 * 17 15 13 20 20 H 1.48490 * 109.47410 * 64.99031 * 17 15 13 21 21 C 1.53001 * 117.49963 * 80.80718 * 12 11 10 22 22 C 1.53005 * 117.50239 * 149.46692 * 12 11 10 23 23 N 1.32161 * 120.01322 * 5.06117 * 3 2 1 24 24 H 1.08999 * 109.47535 * 64.41307 * 1 2 3 25 25 H 1.09007 * 109.47322 * 184.41817 * 1 2 3 26 26 H 1.09000 * 109.47128 * 304.41406 * 1 2 3 27 27 H 1.08000 * 119.94006 * 359.95405 * 4 3 2 28 28 H 1.07999 * 119.98908 * 180.27927 * 6 5 4 29 29 H 0.97003 * 119.99931 * 5.12845 * 10 8 7 30 30 H 1.09003 * 109.47529 * 64.41630 * 11 10 8 31 31 H 1.09005 * 109.47295 * 304.41604 * 11 10 8 32 32 H 0.96998 * 120.00106 * 357.19384 * 16 15 13 33 33 H 1.09002 * 117.49715 * 215.00857 * 21 12 11 34 34 H 1.08998 * 117.49806 * 0.02566 * 21 12 11 35 35 H 1.08996 * 117.49348 * 359.97438 * 22 12 11 36 36 H 1.08995 * 117.49154 * 144.97366 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4337 1.2842 -0.1070 5 7 4.0348 2.4589 -0.1078 6 6 3.3231 3.5688 -0.0125 7 6 1.9369 3.5000 0.0999 8 6 1.1391 4.7430 0.2122 9 8 1.6827 5.8252 0.1103 10 7 -0.1896 4.6740 0.4272 11 6 -0.9963 5.8968 0.4264 12 6 -2.4400 5.5556 0.8008 13 6 -3.1751 4.6770 -0.1784 14 1 -3.2122 3.6089 -0.0233 15 6 -3.8004 5.2370 -1.2723 16 7 -3.6082 6.5054 -1.5618 17 14 -4.9207 4.1940 -2.3430 18 1 -5.3699 4.9909 -3.5128 19 1 -4.1801 2.9964 -2.8149 20 1 -6.1025 3.7655 -1.5527 21 6 -2.7623 5.3813 2.2863 22 6 -3.2502 6.6241 1.5377 23 7 1.3293 2.3153 0.1010 24 1 -0.3634 0.4438 -0.9269 25 1 -0.3634 -1.0247 0.0792 26 1 -0.3633 0.5808 0.8478 27 1 4.0179 0.3796 -0.1891 28 1 3.8172 4.5291 -0.0179 29 1 -0.6117 3.8145 0.5826 30 1 -0.9749 6.3456 -0.5667 31 1 -0.5895 6.6010 1.1522 32 1 -3.0592 7.0572 -0.9829 33 1 -3.5060 4.6311 2.5553 34 1 -1.9459 5.5101 2.9969 35 1 -2.7545 7.5699 1.7560 36 1 -4.3148 6.6918 1.3138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431158332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = -25.028806 kcal Electronic energy + Delta-G solvation = -21231.566753 eV Core-core repulsion = 17909.322737 eV Total energy + Delta-G solvation = -3322.244016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.60033 -40.70642 -39.42154 -38.74163 -35.71419 -34.87762 -33.96823 -32.35541 -28.90929 -28.32290 -27.01301 -25.97978 -24.79669 -23.16808 -22.06330 -21.59990 -19.80002 -19.43612 -18.62308 -17.93884 -17.60968 -17.45451 -16.94306 -16.48419 -15.87119 -15.62687 -15.55305 -15.19121 -14.90685 -14.64826 -14.30573 -14.11084 -13.65174 -13.20068 -12.86629 -12.77642 -12.64173 -12.63636 -12.25491 -12.10607 -11.97898 -11.80324 -11.48979 -10.62603 -10.56156 -10.46684 -10.29332 -10.13327 -9.88679 -8.54560 -6.29454 -0.81090 -0.14284 1.51312 1.54497 1.60522 1.76239 1.78953 1.91067 2.55053 2.57542 2.69243 3.06404 3.21727 3.25902 3.28191 3.79423 3.96829 4.01164 4.30053 4.32236 4.38388 4.40655 4.41715 4.49992 4.73199 4.74916 4.81712 4.91137 5.03788 5.27669 5.35075 5.44235 5.78921 5.86811 6.12339 6.24250 6.34064 6.53957 6.68356 6.98971 7.52794 8.85191 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.005557 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.252013 B = 5037.823176 C = 5883.389977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.294 6.294 3 C 0.269 3.731 4 C 0.086 3.914 5 N -0.411 5.411 6 C 0.067 3.933 7 C 0.063 3.937 8 C 0.562 3.438 9 O -0.567 6.567 10 N -0.676 5.676 11 C 0.169 3.831 12 C -0.022 4.022 13 C -0.577 4.577 14 H 0.052 0.948 15 C -0.017 4.017 16 N -0.929 5.929 17 Si 1.106 2.894 18 H -0.292 1.292 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.165 4.165 22 C -0.173 4.173 23 N -0.485 5.485 24 H 0.052 0.948 25 H 0.135 0.865 26 H 0.058 0.942 27 H 0.223 0.777 28 H 0.191 0.809 29 H 0.414 0.586 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 -13.301 4.628 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.199 6.199 3 C 0.082 3.918 4 C -0.080 4.080 5 N -0.125 5.125 6 C -0.090 4.090 7 C -0.075 4.075 8 C 0.346 3.654 9 O -0.447 6.447 10 N -0.324 5.324 11 C 0.045 3.955 12 C -0.023 4.023 13 C -0.615 4.615 14 H 0.070 0.930 15 C -0.218 4.218 16 N -0.564 5.564 17 Si 0.930 3.070 18 H -0.218 1.218 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.202 4.202 22 C -0.211 4.211 23 N -0.219 5.219 24 H 0.070 0.930 25 H 0.153 0.847 26 H 0.077 0.923 27 H 0.240 0.760 28 H 0.208 0.792 29 H 0.251 0.749 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.333 -12.695 3.190 16.076 hybrid contribution 0.124 0.245 1.312 1.341 sum 9.457 -12.450 4.503 16.270 Atomic orbital electron populations 1.23200 0.75462 1.05517 1.02369 1.86276 1.24324 1.22101 1.87151 1.21296 0.91806 0.85327 0.93342 1.23904 0.89408 0.98566 0.96141 1.68738 1.37494 0.97829 1.08463 1.23694 0.90011 0.99408 0.95855 1.21647 0.93676 0.90787 1.01431 1.18051 0.82473 0.87491 0.77385 1.90748 1.71696 1.29210 1.53026 1.45703 1.06348 1.11933 1.68374 1.20838 0.90495 0.85185 0.98974 1.19330 0.91077 0.99935 0.91932 1.21430 1.35831 0.93821 1.10372 0.93011 1.26966 0.98315 0.98130 0.98409 1.70852 1.39105 1.07994 1.38469 0.83057 0.75258 0.73977 0.74758 1.21773 1.19878 1.19622 1.22901 1.02804 0.99759 0.94735 1.22703 0.99323 0.93013 1.06057 1.67893 1.40786 0.98503 1.14677 0.92961 0.84724 0.92337 0.76022 0.79166 0.74939 0.94929 0.92976 0.92485 0.89494 0.89107 0.89893 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.49 113.37 1.19 1.74 16 2 O -0.29 -6.06 10.49 -89.81 -0.94 -7.00 16 3 C 0.27 6.37 7.49 84.95 0.64 7.00 16 4 C 0.09 1.67 11.18 84.98 0.95 2.62 16 5 N -0.41 -9.63 10.48 -193.72 -2.03 -11.66 16 6 C 0.07 1.81 10.76 84.88 0.91 2.72 16 7 C 0.06 1.99 6.75 41.81 0.28 2.27 16 8 C 0.56 21.53 7.80 86.87 0.68 22.21 16 9 O -0.57 -24.27 16.34 -3.79 -0.06 -24.34 16 10 N -0.68 -27.06 5.45 -465.69 -2.54 -29.61 16 11 C 0.17 7.58 5.39 86.38 0.47 8.05 16 12 C -0.02 -1.01 0.93 -52.92 -0.05 -1.05 16 13 C -0.58 -29.53 8.57 25.60 0.22 -29.31 16 14 H 0.05 2.61 7.83 -2.91 -0.02 2.58 16 15 C -0.02 -0.93 5.37 84.66 0.45 -0.48 16 16 N -0.93 -53.93 13.56 21.45 0.29 -53.64 16 17 Si 1.11 47.92 29.91 68.60 2.05 49.98 16 18 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 C -0.16 -6.44 9.96 30.62 0.30 -6.14 16 22 C -0.17 -7.50 8.90 30.62 0.27 -7.23 16 23 N -0.49 -14.25 8.54 -297.48 -2.54 -16.79 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.06 1.21 7.92 -2.39 -0.02 1.20 16 27 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.19 4.81 7.65 -2.91 -0.02 4.78 16 29 H 0.41 16.01 7.71 -92.71 -0.72 15.29 16 30 H 0.03 1.68 7.66 -2.39 -0.02 1.66 16 31 H 0.05 2.24 8.06 -2.38 -0.02 2.22 16 32 H 0.26 15.46 6.17 -92.71 -0.57 14.89 16 33 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -64.11 319.61 1.14 -62.97 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.59 Total: 27.68 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.32 Total: 2.40 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -6.82 Total: -111.70 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.00 Total: -31.34 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.05 Total: 49.98 kcal Total: -64.11 1.14 -62.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.944 kcal (2) G-P(sol) polarization free energy of solvation -64.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds