Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28393 * 119.09814 * 2 1 4 4 C 1.31409 * 122.26331 * 180.02562 * 3 2 1 5 5 C 1.47885 * 119.89426 * 179.97438 * 4 3 2 6 6 O 1.21548 * 120.00196 * 174.34166 * 5 4 3 7 7 N 1.34775 * 119.99627 * 354.34796 * 5 4 3 8 8 C 1.46501 * 119.99502 * 185.59271 * 7 5 4 9 9 C 1.53005 * 109.46897 * 185.19461 * 8 7 5 10 10 C 1.50697 * 115.54892 * 57.83615 * 9 8 7 11 11 H 1.08004 * 120.00170 * 264.64647 * 10 9 8 12 12 C 1.37877 * 120.00129 * 84.65522 * 10 9 8 13 13 N 1.31516 * 119.99866 * 1.97614 * 12 10 9 14 14 Si 1.86800 * 120.00139 * 181.97555 * 12 10 9 15 15 H 1.48500 * 109.47027 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47011 * 119.99892 * 14 12 10 17 17 H 1.48501 * 109.47162 * 239.99790 * 14 12 10 18 18 C 1.52998 * 117.49753 * 272.16730 * 9 8 7 19 19 C 1.53002 * 117.49969 * 203.50878 * 9 8 7 20 20 C 1.41579 * 120.21217 * 0.02562 * 4 3 2 21 21 C 1.36323 * 118.23819 * 359.97438 * 20 4 3 22 22 C 1.34610 * 119.10315 * 180.28140 * 2 1 3 23 23 O 1.21976 * 120.22340 * 0.02562 * 22 2 1 24 24 H 1.09006 * 109.47264 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46665 * 119.99503 * 1 2 3 26 26 H 1.08997 * 109.47195 * 240.00124 * 1 2 3 27 27 H 0.96999 * 120.00111 * 5.58851 * 7 5 4 28 28 H 1.09001 * 109.46941 * 305.19017 * 8 7 5 29 29 H 1.08994 * 109.47416 * 65.19749 * 8 7 5 30 30 H 0.96995 * 119.99982 * 185.01253 * 13 12 10 31 31 H 1.09000 * 117.49791 * 359.97438 * 18 9 8 32 32 H 1.08998 * 117.49772 * 145.02115 * 18 9 8 33 33 H 1.08998 * 117.49985 * 214.98019 * 19 9 8 34 34 H 1.09000 * 117.49337 * 359.97059 * 19 9 8 35 35 H 1.08005 * 120.87935 * 179.97438 * 20 4 3 36 36 H 1.08008 * 121.03266 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1219 0.0000 4 6 3.4015 1.1944 -0.0005 5 6 4.0666 2.5153 -0.0010 6 8 5.2756 2.5870 0.1023 7 7 3.3322 3.6395 -0.1160 8 6 3.9969 4.9391 -0.2399 9 6 2.9473 6.0523 -0.2244 10 6 2.0637 6.0955 0.9956 11 1 1.0976 5.6131 0.9800 12 6 2.4886 6.7510 2.1317 13 7 3.6481 7.3717 2.1380 14 14 1.4174 6.7576 3.6620 15 1 0.1715 5.9941 3.3974 16 1 2.1557 6.1272 4.7858 17 1 1.0732 8.1573 4.0193 18 6 2.3242 6.4543 -1.5626 19 6 3.3230 7.3865 -0.8723 20 6 4.1804 0.0122 -0.0016 21 6 3.5323 -1.1872 -0.0016 22 6 2.1197 -1.1761 -0.0058 23 8 1.4975 -2.2252 -0.0114 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5138 -0.8901 26 1 -0.3633 -0.5138 0.8900 27 1 2.3636 3.5881 -0.1167 28 1 4.6846 5.0765 0.5946 29 1 4.5515 4.9757 -1.1775 30 1 3.9803 7.7705 2.9574 31 1 2.6623 5.9261 -2.4541 32 1 1.2752 6.7505 -1.5605 33 1 2.9307 8.2955 -0.4163 34 1 4.3180 7.4713 -1.3091 35 1 5.2594 0.0592 -0.0024 36 1 4.0818 -2.1170 -0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431174310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = 1.158065 kcal Electronic energy + Delta-G solvation = -21133.227615 eV Core-core repulsion = 17812.119147 eV Total energy + Delta-G solvation = -3321.108468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.22326 -40.68769 -38.93739 -38.42062 -35.95913 -35.09220 -33.94125 -32.65011 -29.64110 -28.14609 -27.25101 -26.01302 -24.65411 -22.93048 -22.14751 -21.27481 -19.66873 -19.19655 -18.07680 -17.93443 -17.73885 -17.04623 -16.67643 -16.49052 -16.18562 -15.68859 -15.08626 -14.76439 -14.57121 -14.48075 -14.21433 -13.93209 -13.53057 -13.50659 -13.39591 -12.88172 -12.86092 -12.78178 -12.33600 -11.98283 -11.53108 -11.50196 -11.27061 -10.95476 -10.92686 -10.39362 -10.11425 -9.88310 -9.65445 -8.08135 -6.20224 -0.66366 -0.01377 1.02727 1.41100 1.45813 1.53605 1.69891 2.12209 2.42987 2.44221 2.83164 3.21622 3.50694 3.57626 3.69156 3.80587 4.28579 4.31594 4.33308 4.52028 4.56962 4.58681 4.68542 4.70740 4.74684 4.83214 4.93612 5.04317 5.07495 5.33942 5.52586 5.62293 5.72705 5.80808 6.31968 6.39628 6.59055 6.84362 6.87909 7.18716 7.49569 8.99814 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.004986 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.614396 B = 5614.505803 C = 6130.635289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.334 5.334 3 N -0.179 5.179 4 C 0.017 3.983 5 C 0.577 3.423 6 O -0.569 6.569 7 N -0.677 5.677 8 C 0.174 3.826 9 C -0.001 4.001 10 C -0.498 4.498 11 H 0.063 0.937 12 C 0.027 3.973 13 N -0.906 5.906 14 Si 0.941 3.059 15 H -0.261 1.261 16 H -0.290 1.290 17 H -0.286 1.286 18 C -0.178 4.178 19 C -0.153 4.153 20 C -0.025 4.025 21 C -0.186 4.186 22 C 0.469 3.531 23 O -0.558 6.558 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.415 0.585 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.258 0.742 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.179 0.821 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -12.879 -5.672 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.156 5.156 3 N -0.011 5.011 4 C -0.154 4.154 5 C 0.361 3.639 6 O -0.447 6.447 7 N -0.326 5.326 8 C 0.051 3.949 9 C -0.002 4.002 10 C -0.535 4.535 11 H 0.081 0.919 12 C -0.173 4.173 13 N -0.544 5.544 14 Si 0.768 3.232 15 H -0.185 1.185 16 H -0.216 1.216 17 H -0.212 1.212 18 C -0.215 4.215 19 C -0.192 4.192 20 C -0.049 4.049 21 C -0.215 4.215 22 C 0.270 3.730 23 O -0.439 6.439 24 H 0.138 0.862 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.252 0.748 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.197 0.803 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.063 -12.724 -5.526 14.455 hybrid contribution -0.077 -0.084 1.159 1.164 sum -4.140 -12.808 -4.367 14.151 Atomic orbital electron populations 1.22561 0.71642 1.07022 1.05597 1.47021 1.11080 1.02159 1.55303 1.71190 1.11255 1.12656 1.05991 1.21669 0.88614 0.95932 1.09168 1.17526 0.86116 0.83043 0.77248 1.90770 1.14448 1.86911 1.52613 1.45736 1.11346 1.05490 1.70014 1.20730 0.94356 0.81242 0.98622 1.19104 0.96685 0.92615 0.91804 1.20671 1.02564 1.33521 0.96785 0.91924 1.25618 0.96202 0.94284 1.01229 1.70101 1.20472 1.36300 1.27515 0.85767 0.79664 0.77509 0.80274 1.18502 1.21614 1.21243 1.23047 0.97862 1.04622 0.95994 1.22393 0.97846 0.95064 1.03864 1.22349 1.03773 0.89449 0.89281 1.22894 0.91744 1.01217 1.05638 1.18451 0.90973 0.83727 0.79856 1.90950 1.70028 1.30203 1.52725 0.86189 0.88069 0.88514 0.74834 0.94383 0.92979 0.93317 0.88957 0.89862 0.91978 0.90833 0.80325 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.20 127.77 1.30 2.45 16 2 N -0.33 -7.79 3.62 -494.06 -1.79 -9.57 16 3 N -0.18 -4.64 10.06 -48.19 -0.48 -5.13 16 4 C 0.02 0.46 6.84 42.59 0.29 0.75 16 5 C 0.58 20.06 7.79 86.80 0.68 20.74 16 6 O -0.57 -22.84 16.37 -3.87 -0.06 -22.90 16 7 N -0.68 -24.75 5.36 -465.93 -2.50 -27.25 16 8 C 0.17 7.37 5.57 86.38 0.48 7.86 16 9 C 0.00 -0.06 1.51 -52.93 -0.08 -0.14 16 10 C -0.50 -24.42 8.38 25.60 0.21 -24.21 16 11 H 0.06 2.99 7.81 -2.91 -0.02 2.96 16 12 C 0.03 1.41 5.43 84.65 0.46 1.87 16 13 N -0.91 -49.86 12.72 21.45 0.27 -49.59 16 14 Si 0.94 41.41 29.54 68.60 2.03 43.43 16 15 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 18 C -0.18 -6.67 9.94 30.62 0.30 -6.37 16 19 C -0.15 -6.66 9.26 30.62 0.28 -6.37 16 20 C -0.03 -0.55 9.67 22.65 0.22 -0.34 16 21 C -0.19 -3.76 10.11 22.57 0.23 -3.53 16 22 C 0.47 11.75 7.47 85.01 0.64 12.39 16 23 O -0.56 -16.58 17.07 -5.24 -0.09 -16.67 16 24 H 0.12 1.61 8.05 -2.38 -0.02 1.59 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.41 14.18 7.59 -92.71 -0.70 13.48 16 28 H 0.04 1.90 8.09 -2.39 -0.02 1.88 16 29 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 30 H 0.26 13.76 8.32 -92.71 -0.77 12.98 16 31 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.18 3.35 7.73 -2.91 -0.02 3.33 16 36 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.92 320.85 2.79 -61.13 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.40 Total: 21.46 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.02 Total: 5.10 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -4.50 Total: -91.54 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.15 Total: -39.57 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -63.92 2.79 -61.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.284 kcal (2) G-P(sol) polarization free energy of solvation -63.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds