Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21281 * 120.00357 * 2 1 4 4 N 1.34778 * 119.99422 * 180.02562 * 2 1 3 5 5 C 1.39520 * 119.99716 * 179.97438 * 4 2 1 6 6 N 1.32265 * 119.74120 * 0.02562 * 5 4 2 7 7 C 1.31954 * 121.71049 * 179.97438 * 6 5 4 8 8 C 1.38106 * 120.98966 * 359.96775 * 7 6 5 9 9 C 1.38731 * 119.37207 * 0.30434 * 8 7 6 10 10 C 1.38963 * 118.43338 * 359.45824 * 9 8 7 11 11 N 1.40063 * 120.51559 * 180.23748 * 10 9 8 12 12 C 1.34776 * 120.00181 * 325.78674 * 11 10 9 13 13 O 1.21292 * 119.99967 * 4.26300 * 12 11 10 14 14 C 1.50707 * 119.99895 * 184.26822 * 12 11 10 15 15 C 1.52995 * 109.47037 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47160 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00078 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00293 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99591 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00253 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46923 * 120.00258 * 20 18 16 23 23 H 1.48498 * 109.47003 * 240.00334 * 20 18 16 24 24 H 1.08997 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46479 * 299.99580 * 1 2 3 26 26 H 1.09000 * 109.47011 * 59.99755 * 1 2 3 27 27 H 0.96996 * 120.00301 * 359.97438 * 4 2 1 28 28 H 1.07997 * 119.50498 * 179.97438 * 7 6 5 29 29 H 1.08003 * 120.31465 * 180.02562 * 8 7 6 30 30 H 1.08005 * 120.78709 * 179.71894 * 9 8 7 31 31 H 0.97003 * 119.99740 * 145.77688 * 11 10 9 32 32 H 1.09001 * 109.46719 * 299.99827 * 14 12 11 33 33 H 1.09005 * 109.47240 * 59.99567 * 14 12 11 34 34 H 1.09002 * 109.46998 * 299.99934 * 15 14 12 35 35 H 1.08997 * 109.47420 * 59.99584 * 15 14 12 36 36 H 0.97002 * 119.99611 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5760 -1.1673 -0.0011 6 7 4.2322 -0.0190 -0.0005 7 6 5.5510 0.0263 -0.0005 8 6 6.3023 -1.1325 -0.0004 9 6 5.6580 -2.3611 -0.0067 10 6 4.2685 -2.3797 -0.0014 11 7 3.5734 -3.5957 -0.0024 12 6 4.0744 -4.6577 -0.6638 13 8 5.1633 -4.5841 -1.1930 14 6 3.2816 -5.9368 -0.7459 15 6 4.0703 -6.9751 -1.5463 16 6 3.2773 -8.2539 -1.6290 17 1 2.3079 -8.3196 -1.1574 18 6 3.7893 -9.3400 -2.3066 19 7 4.9700 -9.2602 -2.8804 20 14 2.8066 -10.9254 -2.4084 21 1 1.5203 -10.7578 -1.6855 22 1 2.5352 -11.2489 -3.8321 23 1 3.5828 -12.0295 -1.7891 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.6958 -2.0073 -0.0005 28 1 6.0503 0.9839 -0.0005 29 1 7.3812 -1.0827 0.0001 30 1 6.2230 -3.2816 -0.0113 31 1 2.7315 -3.6734 0.4731 32 1 3.0978 -6.3154 0.2595 33 1 2.3299 -5.7432 -1.2409 34 1 4.2538 -6.5962 -2.5517 35 1 5.0221 -7.1687 -1.0518 36 1 5.3303 -10.0245 -3.3568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487008256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = -28.047487 kcal Electronic energy + Delta-G solvation = -20604.803725 eV Core-core repulsion = 17282.428810 eV Total energy + Delta-G solvation = -3322.374915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20838 -39.64074 -38.69538 -35.46653 -34.53635 -33.61003 -31.89446 -31.23683 -30.31191 -28.78203 -25.94137 -24.23405 -23.18829 -21.61396 -20.73564 -20.02659 -18.60203 -17.45700 -17.05232 -16.93057 -15.92700 -15.85908 -15.48618 -15.10815 -14.82945 -14.50502 -14.09051 -13.99998 -13.65671 -13.06812 -12.89846 -12.73774 -12.47370 -12.31222 -12.25237 -11.30684 -11.03347 -10.93149 -10.77999 -10.66807 -10.45449 -10.11256 -9.82573 -9.55463 -9.29884 -9.18642 -8.92645 -8.41716 -7.92301 -6.05086 -4.10184 0.96959 1.31712 2.49577 2.62349 2.90913 3.08821 3.26927 3.34664 3.37107 3.88047 4.22273 4.39725 4.61692 4.78501 4.89291 4.96218 5.08511 5.12182 5.29048 5.30437 5.47421 5.47934 5.80955 6.01209 6.02486 6.14982 6.17615 6.30918 6.68566 6.80793 6.95420 7.42326 7.63583 7.71701 7.81746 7.95325 8.13285 8.24421 8.42152 8.97728 9.54222 11.05780 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024552 B = 0.003615 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.182262 B = 7743.212263 C = 8745.994847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.501 3.499 3 O -0.481 6.481 4 N -0.662 5.662 5 C 0.329 3.671 6 N -0.461 5.461 7 C 0.103 3.897 8 C -0.180 4.180 9 C -0.058 4.058 10 C 0.076 3.924 11 N -0.683 5.683 12 C 0.511 3.489 13 O -0.510 6.510 14 C -0.128 4.128 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.413 0.587 28 H 0.158 0.842 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.404 0.596 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 16.223 8.442 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.287 3.713 3 O -0.350 6.350 4 N -0.310 5.310 5 C 0.096 3.904 6 N -0.175 5.175 7 C -0.055 4.055 8 C -0.202 4.202 9 C -0.086 4.086 10 C -0.024 4.024 11 N -0.331 5.331 12 C 0.300 3.700 13 O -0.383 6.383 14 C -0.168 4.168 15 C -0.002 4.002 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.250 0.750 28 H 0.175 0.825 29 H 0.156 0.844 30 H 0.174 0.826 31 H 0.240 0.760 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.937 17.689 7.911 20.266 hybrid contribution -0.666 -2.228 0.084 2.327 sum -6.603 15.461 7.995 18.616 Atomic orbital electron populations 1.21875 0.90757 1.04584 1.05664 1.21064 0.90612 0.83266 0.76316 1.90832 1.69931 1.30298 1.43956 1.43703 1.03624 1.10587 1.73105 1.18280 0.84607 0.88586 0.98974 1.67587 1.10032 1.25299 1.14577 1.22555 0.88203 0.98639 0.96107 1.22046 1.01682 0.92573 1.03863 1.21686 0.92113 0.99934 0.94828 1.18268 0.92523 0.84909 1.06718 1.43828 1.25878 1.09491 1.53897 1.21925 0.87227 0.84934 0.75866 1.90674 1.20878 1.82461 1.44240 1.21931 0.99930 0.91363 1.03546 1.18931 0.95069 0.90949 0.95225 1.21208 1.03900 0.97177 1.34482 0.92468 1.25025 0.94990 0.98909 0.95400 1.70002 1.16976 1.30813 1.34865 0.86522 0.80095 0.83468 0.77800 1.19725 1.20976 1.20964 0.90328 0.88383 0.88338 0.75016 0.82451 0.84427 0.82641 0.76015 0.89666 0.89714 0.95686 0.95660 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.39 36.01 0.37 -0.62 16 2 C 0.50 5.56 7.90 -10.98 -0.09 5.47 16 3 O -0.48 -7.57 15.35 5.56 0.09 -7.48 16 4 N -0.66 -6.98 5.38 -11.27 -0.06 -7.04 16 5 C 0.33 4.55 7.45 -154.45 -1.15 3.40 16 6 N -0.46 -6.98 7.87 -12.20 -0.10 -7.08 16 7 C 0.10 1.30 11.17 -17.55 -0.20 1.10 16 8 C -0.18 -2.19 10.10 -39.45 -0.40 -2.59 16 9 C -0.06 -0.83 8.81 -39.13 -0.34 -1.18 16 10 C 0.08 1.06 6.35 -83.31 -0.53 0.53 16 11 N -0.68 -8.71 5.03 -9.63 -0.05 -8.76 16 12 C 0.51 8.78 7.69 -10.98 -0.08 8.69 16 13 O -0.51 -10.84 13.43 5.55 0.07 -10.77 16 14 C -0.13 -2.30 5.64 -27.88 -0.16 -2.46 16 15 C 0.04 0.90 4.26 -27.89 -0.12 0.78 16 16 C -0.53 -14.28 9.11 -34.44 -0.31 -14.59 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.08 0.26 7.91 -51.93 -0.41 -0.15 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.41 2.90 7.13 -40.82 -0.29 2.61 16 28 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.16 2.47 6.27 -52.48 -0.33 2.14 16 31 H 0.40 3.53 7.71 -40.82 -0.31 3.21 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -36.99 315.50 -6.94 -43.93 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.26 Total: 2.24 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -3.10 Total: 0.10 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.53 Total: -48.66 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.16 Total: -18.25 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.99 -6.94 -43.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487008256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.885 kcal (2) G-P(sol) polarization free energy of solvation -36.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds