Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47148 * 140.66402 * 3 2 1 5 5 C 1.37105 * 119.99746 * 270.58568 * 4 3 2 6 6 H 1.07998 * 119.99700 * 144.38982 * 5 4 3 7 7 C 1.38941 * 119.99897 * 324.39636 * 5 4 3 8 8 N 1.31413 * 120.00238 * 155.74426 * 7 5 4 9 9 Si 1.86797 * 120.00238 * 335.73488 * 7 5 4 10 10 H 1.48507 * 109.46956 * 94.85365 * 9 7 5 11 11 H 1.48502 * 109.47287 * 214.85395 * 9 7 5 12 12 H 1.48498 * 109.47179 * 334.85920 * 9 7 5 13 13 C 1.34768 * 120.00410 * 90.58009 * 4 3 2 14 14 O 1.21290 * 120.00389 * 184.06335 * 13 4 3 15 15 C 1.50705 * 120.00040 * 4.06338 * 13 4 3 16 16 H 1.09007 * 109.46868 * 40.67117 * 15 13 4 17 17 O 1.42900 * 109.47496 * 160.66944 * 15 13 4 18 18 C 1.52996 * 109.47313 * 280.67320 * 15 13 4 19 19 C 1.50695 * 109.47400 * 174.10083 * 18 15 13 20 20 C 1.39875 * 126.03943 * 90.02541 * 19 18 15 21 21 N 1.30841 * 108.20499 * 179.97438 * 20 19 18 22 22 N 1.40089 * 108.20193 * 359.97438 * 21 20 19 23 23 C 1.46498 * 126.03457 * 180.02562 * 22 21 20 24 24 C 1.34951 * 107.92722 * 359.76410 * 22 21 20 25 25 H 4.40646 * 5.51418 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47487 * 20.66527 * 3 2 1 27 27 H 1.08998 * 109.47254 * 260.66069 * 3 2 1 28 28 H 0.96996 * 120.00431 * 179.97438 * 8 7 5 29 29 H 0.96695 * 113.99614 * 60.00071 * 17 15 13 30 30 H 1.09003 * 109.47219 * 294.10583 * 18 15 13 31 31 H 1.09001 * 109.47230 * 54.09873 * 18 15 13 32 32 H 1.07998 * 125.89626 * 359.95354 * 20 19 18 33 33 H 1.08997 * 109.47052 * 89.97950 * 23 22 21 34 34 H 1.08999 * 109.47162 * 209.98206 * 23 22 21 35 35 H 1.09006 * 109.47092 * 329.97999 * 23 22 21 36 36 H 1.07993 * 126.12861 * 180.23313 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.0692 -0.8755 5 6 3.3510 0.8197 -2.2061 6 1 3.1459 1.5854 -2.9395 7 6 3.8348 -0.4183 -2.6108 8 7 3.6066 -0.8456 -3.8324 9 14 4.8098 -1.4753 -1.4186 10 1 3.8985 -2.4415 -0.7543 11 1 5.8616 -2.2163 -2.1601 12 1 5.4444 -0.6084 -0.3934 13 6 3.3691 2.2974 -0.3732 14 8 3.7020 3.2009 -1.1108 15 6 3.2184 2.5484 1.1052 16 1 3.6234 1.7023 1.6605 17 8 3.9288 3.7360 1.4616 18 6 1.7365 2.7192 1.4451 19 6 1.5728 2.8254 2.9393 20 6 1.5968 4.0068 3.6879 21 7 1.4208 3.6966 4.9468 22 7 1.2783 2.3061 5.0391 23 6 1.0619 1.5418 6.2700 24 6 1.3698 1.7955 3.7933 25 1 -1.0502 -0.0002 0.0004 26 1 3.0098 -0.9607 -0.3627 27 1 3.0092 0.1676 1.0140 28 1 3.9446 -1.7097 -4.1150 29 1 3.6209 4.5305 1.0045 30 1 1.3574 3.6254 0.9726 31 1 1.1780 1.8578 1.0787 32 1 1.7369 5.0028 3.2947 33 1 -0.0079 1.4488 6.4566 34 1 1.4998 0.5493 6.1632 35 1 1.5330 2.0586 7.1062 36 1 1.2970 0.7517 3.5260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = 73.667713 kcal Electronic energy + Delta-G solvation = -21642.863290 eV Core-core repulsion = 18324.899076 eV Total energy + Delta-G solvation = -3317.964213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17627 -39.34286 -36.38496 -35.30481 -33.51495 -32.81116 -31.77127 -31.63375 -28.89009 -27.06885 -26.72772 -24.98421 -23.10977 -21.05297 -20.16017 -19.41337 -18.57610 -17.20032 -16.81851 -16.42336 -16.17197 -15.59942 -15.29308 -14.79878 -14.42385 -14.13742 -13.68163 -13.38072 -13.16775 -13.07920 -12.86218 -12.73916 -12.54002 -12.45925 -12.10292 -11.56729 -11.23921 -10.97941 -10.83801 -10.56017 -10.29552 -10.20701 -9.84275 -9.54348 -9.38615 -9.18363 -8.61423 -8.15200 -7.96399 -6.48279 -4.03191 1.89893 2.51473 2.84234 2.92202 3.08341 3.11421 3.18171 3.27274 3.57961 4.06196 4.37442 4.46559 4.71930 4.77691 4.86996 4.95310 5.00134 5.10622 5.19702 5.23122 5.32198 5.44596 5.64142 5.71768 5.77527 5.88844 5.95467 6.17368 6.32527 6.35399 6.70706 7.00880 7.41303 7.72143 7.95840 8.00142 8.18337 8.38215 8.85068 9.21025 9.59978 10.63692 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.005605 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.562266 B = 4994.567562 C = 5441.099277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.188 3.812 4 N -0.457 5.457 5 C -0.321 4.321 6 H 0.109 0.891 7 C 0.064 3.936 8 N -0.854 5.854 9 Si 0.861 3.139 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.443 3.557 14 O -0.553 6.553 15 C 0.099 3.901 16 H 0.106 0.894 17 O -0.541 6.541 18 C -0.080 4.080 19 C -0.216 4.216 20 C 0.064 3.936 21 N -0.304 5.304 22 N -0.381 5.381 23 C 0.104 3.896 24 C 0.051 3.949 25 H 0.214 0.786 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.275 0.725 29 H 0.378 0.622 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 0.066 17.026 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C 0.065 3.935 4 N -0.179 5.179 5 C -0.448 4.448 6 H 0.126 0.874 7 C -0.143 4.143 8 N -0.490 5.490 9 Si 0.688 3.312 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.231 3.769 14 O -0.434 6.434 15 C 0.036 3.964 16 H 0.124 0.876 17 O -0.346 6.346 18 C -0.119 4.119 19 C -0.227 4.227 20 C -0.122 4.122 21 N -0.126 5.126 22 N -0.164 5.164 23 C -0.037 4.037 24 C -0.094 4.094 25 H 0.231 0.769 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.226 0.774 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.029 0.340 18.199 19.175 hybrid contribution 0.040 -0.927 -0.757 1.197 sum -5.989 -0.587 17.442 18.451 Atomic orbital electron populations 1.24728 0.95629 1.01024 1.01540 1.23542 0.94711 0.99710 0.99452 1.18948 0.84320 0.94663 0.95539 1.43717 1.56954 1.08113 1.09149 1.19044 1.43940 1.01253 0.80546 0.87393 1.25294 0.96209 0.96748 0.96029 1.69780 1.40842 1.19688 1.18655 0.87212 0.81194 0.80639 0.82159 1.19913 1.20783 1.18285 1.21139 0.81425 0.84217 0.90097 1.90565 1.49792 1.42757 1.60290 1.21870 0.92056 0.89476 0.92969 0.87601 1.86509 1.62328 1.17538 1.68198 1.20771 0.96132 1.04615 0.90411 1.19919 1.14235 0.92250 0.96344 1.23757 0.98748 0.99621 0.90082 1.77307 1.24640 0.90388 1.20252 1.48370 1.56619 1.05186 1.06228 1.21792 1.02423 0.95143 0.84388 1.22309 1.02681 0.99835 0.84589 0.76940 0.88831 0.89416 0.91440 0.77374 0.90403 0.88862 0.80214 0.91043 0.89618 0.89518 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.24 18.64 29.55 0.55 -2.69 16 2 C -0.17 -3.09 11.22 -37.13 -0.42 -3.51 16 3 C 0.19 3.66 4.42 -6.83 -0.03 3.63 16 4 N -0.46 -10.78 2.16 -117.94 -0.26 -11.04 16 5 C -0.32 -8.94 9.40 -14.93 -0.14 -9.08 16 6 H 0.11 3.40 7.83 -52.49 -0.41 2.99 16 7 C 0.06 1.73 5.29 -17.47 -0.09 1.63 16 8 N -0.85 -24.22 13.96 55.50 0.77 -23.44 16 9 Si 0.86 19.53 25.12 -169.99 -4.27 15.26 16 10 H -0.27 -5.65 6.62 56.52 0.37 -5.28 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.44 10.08 6.89 -10.99 -0.08 10.01 16 14 O -0.55 -14.62 16.16 -13.57 -0.22 -14.84 16 15 C 0.10 1.75 2.57 -27.88 -0.07 1.68 16 16 H 0.11 1.76 6.47 -51.93 -0.34 1.43 16 17 O -0.54 -9.44 12.89 -54.35 -0.70 -10.14 16 18 C -0.08 -1.20 5.27 -27.89 -0.15 -1.34 16 19 C -0.22 -2.95 5.14 -105.05 -0.54 -3.49 16 20 C 0.06 0.87 11.96 -17.36 -0.21 0.66 16 21 N -0.30 -4.32 12.58 30.63 0.39 -3.94 16 22 N -0.38 -4.56 4.01 -68.16 -0.27 -4.83 16 23 C 0.10 0.75 11.47 59.85 0.69 1.44 16 24 C 0.05 0.62 11.40 -17.22 -0.20 0.42 16 25 H 0.21 2.40 7.80 -54.08 -0.42 1.98 16 26 H 0.09 1.93 3.12 -51.93 -0.16 1.76 16 27 H 0.09 1.39 5.91 -51.93 -0.31 1.08 16 28 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.38 5.75 8.66 45.56 0.39 6.15 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.42 4.18 -51.93 -0.22 1.20 16 32 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -34.76 312.36 -3.69 -38.45 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.16 Total: 10.46 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.68 Total: -0.65 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.63 Total: -43.25 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.92 Total: -24.99 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.27 Total: 15.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.76 -3.69 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.118 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds