Wall clock time and date at job start Mon Mar 30 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47148 * 140.66402 * 3 2 1 5 5 C 1.37105 * 119.99746 * 270.58568 * 4 3 2 6 6 H 1.07998 * 119.99700 * 144.38982 * 5 4 3 7 7 C 1.38941 * 119.99897 * 324.39636 * 5 4 3 8 8 N 1.31413 * 120.00238 * 155.74426 * 7 5 4 9 9 Si 1.86797 * 120.00238 * 335.73488 * 7 5 4 10 10 H 1.48507 * 109.46956 * 94.85365 * 9 7 5 11 11 H 1.48502 * 109.47287 * 214.85395 * 9 7 5 12 12 H 1.48498 * 109.47179 * 334.85920 * 9 7 5 13 13 C 1.34768 * 120.00410 * 90.58009 * 4 3 2 14 14 O 1.21290 * 120.00389 * 184.06335 * 13 4 3 15 15 C 1.50705 * 120.00040 * 4.06338 * 13 4 3 16 16 H 1.09007 * 109.46868 * 40.67117 * 15 13 4 17 17 O 1.42900 * 109.47496 * 160.66944 * 15 13 4 18 18 C 1.52996 * 109.47313 * 280.67320 * 15 13 4 19 19 C 1.50695 * 109.47400 * 174.10083 * 18 15 13 20 20 C 1.39875 * 126.03943 * 90.02541 * 19 18 15 21 21 N 1.30841 * 108.20499 * 179.97438 * 20 19 18 22 22 N 1.40089 * 108.20193 * 359.97438 * 21 20 19 23 23 C 1.46498 * 126.03457 * 180.02562 * 22 21 20 24 24 C 1.34951 * 107.92722 * 359.76410 * 22 21 20 25 25 H 4.40646 * 5.51418 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47487 * 20.66527 * 3 2 1 27 27 H 1.08998 * 109.47254 * 260.66069 * 3 2 1 28 28 H 0.96996 * 120.00431 * 179.97438 * 8 7 5 29 29 H 0.96695 * 113.99614 * 60.00071 * 17 15 13 30 30 H 1.09003 * 109.47219 * 294.10583 * 18 15 13 31 31 H 1.09001 * 109.47230 * 54.09873 * 18 15 13 32 32 H 1.07998 * 125.89626 * 359.95354 * 20 19 18 33 33 H 1.08997 * 109.47052 * 89.97950 * 23 22 21 34 34 H 1.08999 * 109.47162 * 209.98206 * 23 22 21 35 35 H 1.09006 * 109.47092 * 329.97999 * 23 22 21 36 36 H 1.07993 * 126.12861 * 180.23313 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.0692 -0.8755 5 6 3.3510 0.8197 -2.2061 6 1 3.1459 1.5854 -2.9395 7 6 3.8348 -0.4183 -2.6108 8 7 3.6066 -0.8456 -3.8324 9 14 4.8098 -1.4753 -1.4186 10 1 3.8985 -2.4415 -0.7543 11 1 5.8616 -2.2163 -2.1601 12 1 5.4444 -0.6084 -0.3934 13 6 3.3691 2.2974 -0.3732 14 8 3.7020 3.2009 -1.1108 15 6 3.2184 2.5484 1.1052 16 1 3.6234 1.7023 1.6605 17 8 3.9288 3.7360 1.4616 18 6 1.7365 2.7192 1.4451 19 6 1.5728 2.8254 2.9393 20 6 1.5968 4.0068 3.6879 21 7 1.4208 3.6966 4.9468 22 7 1.2783 2.3061 5.0391 23 6 1.0619 1.5418 6.2700 24 6 1.3698 1.7955 3.7933 25 1 -1.0502 -0.0002 0.0004 26 1 3.0098 -0.9607 -0.3627 27 1 3.0092 0.1676 1.0140 28 1 3.9446 -1.7097 -4.1150 29 1 3.6209 4.5305 1.0045 30 1 1.3574 3.6254 0.9726 31 1 1.1780 1.8578 1.0787 32 1 1.7369 5.0028 3.2947 33 1 -0.0079 1.4488 6.4566 34 1 1.4998 0.5493 6.1632 35 1 1.5330 2.0586 7.1062 36 1 1.2970 0.7517 3.5260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:08 Heat of formation + Delta-G solvation = 47.480285 kcal Electronic energy + Delta-G solvation = -21643.998862 eV Core-core repulsion = 18324.899076 eV Total energy + Delta-G solvation = -3319.099785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12970 -41.00532 -37.89426 -37.01746 -34.69704 -34.30795 -33.36071 -32.80402 -30.03421 -28.49592 -27.93601 -26.50877 -24.52291 -21.94122 -21.15973 -21.07667 -20.16422 -18.70384 -18.36518 -17.89858 -17.46883 -16.98275 -16.50510 -16.05113 -15.62826 -15.41623 -15.15978 -14.83889 -14.70942 -14.44348 -14.29061 -13.97085 -13.76797 -13.42980 -13.15871 -12.94991 -12.78544 -12.63310 -12.48326 -12.00374 -11.68759 -11.54551 -11.29230 -11.14433 -10.83399 -10.31827 -10.23272 -9.93907 -9.20491 -8.54681 -6.15643 0.99721 1.15584 1.30736 1.43269 1.61532 1.76884 1.82959 1.93302 1.96934 2.15792 2.80951 2.90145 3.42228 3.58655 3.69454 3.81977 3.95347 4.12350 4.17778 4.25447 4.38554 4.43653 4.49810 4.56597 4.68792 4.74578 4.92964 5.03596 5.15077 5.27341 5.47224 5.74303 6.00492 6.20816 6.42205 6.68900 6.75429 6.79134 6.87015 7.21186 7.73055 8.62514 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.005605 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.562266 B = 4994.567562 C = 5441.099277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.226 4.226 3 C 0.187 3.813 4 N -0.465 5.465 5 C -0.341 4.341 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.902 5.902 9 Si 0.931 3.069 10 H -0.232 1.232 11 H -0.283 1.283 12 H -0.251 1.251 13 C 0.435 3.565 14 O -0.605 6.605 15 C 0.115 3.885 16 H 0.125 0.875 17 O -0.547 6.547 18 C -0.064 4.064 19 C -0.238 4.238 20 C 0.053 3.947 21 N -0.335 5.335 22 N -0.380 5.380 23 C 0.093 3.907 24 C 0.063 3.937 25 H 0.253 0.747 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.282 0.718 29 H 0.386 0.614 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.189 0.811 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 -2.028 20.447 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.227 4.227 3 C 0.065 3.935 4 N -0.187 5.187 5 C -0.469 4.469 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.539 5.539 9 Si 0.754 3.246 10 H -0.157 1.157 11 H -0.210 1.210 12 H -0.175 1.175 13 C 0.225 3.775 14 O -0.490 6.490 15 C 0.052 3.948 16 H 0.142 0.858 17 O -0.352 6.352 18 C -0.103 4.103 19 C -0.249 4.249 20 C -0.132 4.132 21 N -0.157 5.157 22 N -0.162 5.162 23 C -0.047 4.047 24 C -0.084 4.084 25 H 0.269 0.731 26 H 0.101 0.899 27 H 0.144 0.856 28 H 0.091 0.909 29 H 0.236 0.764 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.206 0.794 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.942 -1.764 21.669 22.822 hybrid contribution 0.196 -0.216 -1.841 1.864 sum -6.746 -1.980 19.828 21.037 Atomic orbital electron populations 1.25636 0.96397 0.98006 0.98750 1.23427 0.94904 1.02386 1.02024 1.19042 0.85761 0.92462 0.96212 1.43793 1.57300 1.09558 1.08061 1.18619 1.45860 1.00377 0.82044 0.93691 1.26081 0.96299 0.97986 0.98175 1.69890 1.42016 1.20812 1.21167 0.86102 0.79556 0.79255 0.79723 1.15726 1.20984 1.17461 1.22233 0.79713 0.83270 0.92308 1.90526 1.51815 1.44361 1.62255 1.21857 0.94250 0.90061 0.88637 0.85800 1.86481 1.62816 1.17930 1.68022 1.20531 0.93679 1.04397 0.91658 1.19792 1.16666 0.93016 0.95471 1.23999 0.98647 1.00373 0.90149 1.77264 1.25801 0.92122 1.20524 1.48760 1.55258 1.04648 1.07546 1.22186 1.03839 0.95882 0.82770 1.22764 1.00569 1.00809 0.84283 0.73128 0.89904 0.85583 0.90874 0.76448 0.90979 0.88747 0.79370 0.89501 0.86834 0.89286 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 18.64 74.32 1.39 -3.22 16 2 C -0.23 -7.50 11.22 31.12 0.35 -7.15 16 3 C 0.19 6.84 4.42 84.57 0.37 7.21 16 4 N -0.47 -22.12 2.16 -645.43 -1.40 -23.52 16 5 C -0.34 -19.91 9.40 84.04 0.79 -19.12 16 6 H 0.05 3.10 7.83 -2.91 -0.02 3.08 16 7 C 0.02 0.98 5.29 84.92 0.45 1.43 16 8 N -0.90 -52.90 13.96 21.66 0.30 -52.60 16 9 Si 0.93 39.72 25.12 68.60 1.72 41.45 16 10 H -0.23 -8.45 6.62 99.48 0.66 -7.79 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 13 C 0.43 20.07 6.89 87.66 0.60 20.67 16 14 O -0.61 -33.55 16.16 15.22 0.25 -33.31 16 15 C 0.11 3.87 2.57 29.85 0.08 3.95 16 16 H 0.12 3.73 6.47 -2.38 -0.02 3.71 16 17 O -0.55 -18.61 12.89 -130.70 -1.68 -20.29 16 18 C -0.06 -1.78 5.27 29.85 0.16 -1.62 16 19 C -0.24 -5.88 5.14 -20.14 -0.10 -5.99 16 20 C 0.05 1.37 11.96 85.24 1.02 2.39 16 21 N -0.33 -8.85 12.58 -57.02 -0.72 -9.56 16 22 N -0.38 -7.80 4.01 -369.57 -1.48 -9.29 16 23 C 0.09 0.99 11.47 127.77 1.47 2.46 16 24 C 0.06 1.27 11.40 83.54 0.95 2.22 16 25 H 0.25 4.40 7.80 -4.41 -0.03 4.37 16 26 H 0.08 3.18 3.12 -2.39 -0.01 3.17 16 27 H 0.13 3.50 5.91 -2.39 -0.01 3.49 16 28 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.39 11.78 8.66 -74.06 -0.64 11.14 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 2.64 4.18 -2.39 -0.01 2.63 16 32 H 0.19 4.14 8.06 -2.91 -0.02 4.11 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.92 8.14 -2.38 -0.02 0.91 16 36 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -80.79 312.36 4.94 -75.85 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.43 Total: 28.05 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 7.52 Total: 3.23 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -3.29 Total: -94.97 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -1.44 Total: -53.60 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.72 Total: 41.45 kcal Total: -80.79 4.94 -75.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.327 kcal (2) G-P(sol) polarization free energy of solvation -80.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds