Wall clock time and date at job start Mon Mar 30 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35336 * 116.99704 * 2 1 4 4 N 1.32458 * 118.98793 * 180.02562 * 3 2 1 5 5 C 1.32000 * 120.94285 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.95674 * 0.02562 * 5 4 3 7 7 C 1.47046 * 120.91238 * 180.02562 * 6 5 4 8 8 C 1.34938 * 120.00136 * 46.13405 * 7 6 5 9 9 C 1.46279 * 119.99620 * 11.44472 * 8 7 6 10 10 O 1.21719 * 120.00460 * 6.78102 * 9 8 7 11 11 N 1.34782 * 119.99452 * 186.77713 * 9 8 7 12 12 C 1.46494 * 120.00409 * 0.27566 * 11 9 8 13 13 C 1.46510 * 119.99577 * 180.02562 * 11 9 8 14 14 C 1.50690 * 109.47172 * 89.99535 * 13 11 9 15 15 H 1.07995 * 120.00521 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99700 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00186 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47190 * 90.00217 * 18 16 14 20 20 H 1.48501 * 109.47000 * 209.99836 * 18 16 14 21 21 H 1.48497 * 109.47289 * 330.00092 * 18 16 14 22 22 C 1.40300 * 118.17940 * 0.27208 * 6 5 4 23 23 N 1.32006 * 118.95019 * 359.44677 * 22 6 5 24 24 H 1.08997 * 109.47267 * 299.99363 * 1 2 3 25 25 H 1.09003 * 109.47571 * 60.00043 * 1 2 3 26 26 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.52638 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.00341 * 226.13218 * 7 6 5 29 29 H 1.08000 * 120.00198 * 191.45047 * 8 7 6 30 30 H 1.08996 * 109.47213 * 269.72637 * 12 11 9 31 31 H 1.08998 * 109.47120 * 29.72599 * 12 11 9 32 32 H 1.08997 * 109.47136 * 149.72527 * 12 11 9 33 33 H 1.09003 * 109.46543 * 210.00139 * 13 11 9 34 34 H 1.09006 * 109.46394 * 329.99504 * 13 11 9 35 35 H 0.97000 * 120.00007 * 179.97438 * 17 16 14 36 36 H 1.07993 * 120.51956 * 179.72859 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2059 0.0000 4 7 3.3671 1.2519 -0.0005 5 6 4.0061 2.4069 -0.0010 6 6 3.2607 3.5955 -0.0005 7 6 3.9282 4.9057 -0.0016 8 6 4.9551 5.1391 -0.8454 9 6 5.2446 4.1943 -1.9239 10 8 4.4887 3.2646 -2.1380 11 7 6.3486 4.3532 -2.6806 12 6 7.2616 5.4686 -2.4191 13 6 6.6384 3.4072 -3.7611 14 6 6.0003 3.8916 -5.0374 15 1 5.4357 4.8123 -5.0434 16 6 6.1381 3.1600 -6.1980 17 7 6.8260 2.0391 -6.1909 18 14 5.3477 3.7608 -7.7803 19 1 6.3026 4.6326 -8.5106 20 1 4.9923 2.5956 -8.6295 21 1 4.1200 4.5319 -7.4587 22 6 1.8610 3.4998 0.0065 23 7 1.3023 2.3038 0.0010 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 5.0857 2.4366 -0.0019 28 1 3.5966 5.6813 0.6729 29 1 5.5632 6.0234 -0.7244 30 1 6.9587 6.3324 -3.0108 31 1 7.2291 5.7241 -1.3600 32 1 8.2764 5.1790 -2.6920 33 1 7.7170 3.3330 -3.8994 34 1 6.2368 2.4271 -3.5033 35 1 6.9226 1.5242 -7.0073 36 1 1.2504 4.3905 0.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492651303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:57 Heat of formation + Delta-G solvation = 17.550733 kcal Electronic energy + Delta-G solvation = -21134.481761 eV Core-core repulsion = 17814.084133 eV Total energy + Delta-G solvation = -3320.397628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96651 -39.19688 -38.05922 -35.09684 -33.85025 -33.55424 -32.61130 -29.93837 -27.97247 -27.36884 -25.90581 -24.35567 -24.28778 -22.96257 -20.86714 -18.68394 -18.15717 -17.76594 -16.81600 -16.52622 -16.19210 -15.53489 -15.01224 -14.47677 -14.41368 -14.25648 -14.05517 -13.63241 -13.32209 -13.13861 -12.51981 -12.40199 -12.11758 -11.96450 -11.90137 -11.30838 -11.22829 -10.95350 -10.91532 -10.61196 -10.56926 -10.16716 -9.89293 -9.64373 -9.21095 -8.80044 -8.44177 -8.03435 -7.67003 -6.05015 -4.09814 0.76004 1.38991 1.90175 2.75672 3.29217 3.36180 3.40247 3.83424 4.00372 4.04370 4.22281 4.44407 4.73646 4.82325 4.95208 5.01254 5.21199 5.25846 5.27392 5.32404 5.45669 5.56074 5.63406 5.91397 5.93582 6.10527 6.18024 6.26603 6.41896 6.93340 7.04175 7.33469 7.41584 7.49626 7.90666 8.21454 8.31634 8.35499 8.87327 9.03374 9.55093 11.03072 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005178 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.190807 B = 5405.943495 C = 6432.869953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.292 6.292 3 C 0.498 3.502 4 N -0.525 5.525 5 C 0.264 3.736 6 C -0.198 4.198 7 C -0.036 4.036 8 C -0.191 4.191 9 C 0.525 3.475 10 O -0.538 6.538 11 N -0.592 5.592 12 C 0.083 3.917 13 C 0.245 3.755 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.191 3.809 23 N -0.577 5.577 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.166 0.834 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 6.027 15.494 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.194 6.194 3 C 0.197 3.803 4 N -0.250 5.250 5 C 0.096 3.904 6 C -0.203 4.203 7 C -0.057 4.057 8 C -0.212 4.212 9 C 0.313 3.687 10 O -0.418 6.418 11 N -0.323 5.323 12 C -0.061 4.061 13 C 0.125 3.875 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.027 3.973 23 N -0.307 5.307 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.183 0.817 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.150 4.128 15.204 17.301 hybrid contribution -0.070 1.448 -1.277 1.932 sum -7.220 5.576 13.927 16.649 Atomic orbital electron populations 1.22925 0.76183 1.03141 1.02661 1.86038 1.23001 1.23230 1.87097 1.20711 0.86312 0.84500 0.88826 1.67483 1.07196 1.30392 1.19951 1.23036 0.99784 0.84869 0.82677 1.20396 0.95547 0.95706 1.08644 1.21891 0.93412 0.93577 0.96857 1.23416 0.99574 1.01658 0.96591 1.18283 0.81854 0.85548 0.82984 1.90822 1.47001 1.32964 1.70993 1.48167 1.22060 1.28555 1.33492 1.21686 0.94501 0.90231 0.99674 1.19336 0.96418 0.88572 0.83126 1.21393 1.33336 1.08309 0.93466 0.92559 1.24932 0.95281 0.94774 0.99091 1.69927 1.40646 1.14368 1.28326 0.86503 0.79659 0.78314 0.82990 1.20584 1.21056 1.19974 1.22921 0.91322 0.94093 0.88952 1.67874 1.41110 0.99202 1.22482 0.92167 0.91968 0.88218 0.81744 0.84582 0.84807 0.93107 0.92279 0.91284 0.94934 0.93696 0.92680 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.35 101.05 1.05 1.58 16 2 O -0.29 -4.86 10.55 -17.70 -0.19 -5.04 16 3 C 0.50 9.04 8.48 -91.01 -0.77 8.27 16 4 N -0.53 -10.19 10.44 -14.33 -0.15 -10.34 16 5 C 0.26 4.58 8.02 -16.71 -0.13 4.45 16 6 C -0.20 -2.95 4.43 -104.78 -0.46 -3.41 16 7 C -0.04 -0.43 9.84 -37.18 -0.37 -0.79 16 8 C -0.19 -2.59 9.06 -37.52 -0.34 -2.93 16 9 C 0.52 10.37 6.78 -13.03 -0.09 10.28 16 10 O -0.54 -12.87 11.95 5.17 0.06 -12.81 16 11 N -0.59 -12.19 2.86 -184.66 -0.53 -12.72 16 12 C 0.08 1.24 10.15 59.84 0.61 1.85 16 13 C 0.24 6.37 5.21 -5.19 -0.03 6.35 16 14 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 18 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.19 2.70 11.10 -16.70 -0.19 2.52 16 23 N -0.58 -9.34 9.18 -14.33 -0.13 -9.48 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.17 2.71 7.38 -52.48 -0.39 2.32 16 28 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.13 1.36 6.34 -52.49 -0.33 1.02 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.65 6.19 -51.93 -0.32 0.33 16 32 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 33 H 0.03 0.85 7.89 -51.93 -0.41 0.45 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -36.41 315.18 -5.93 -42.34 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.32 Total: -2.16 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -1.14 Total: 14.46 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.07 Total: -58.72 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.12 Total: -17.85 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.41 -5.93 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492651303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.896 kcal (2) G-P(sol) polarization free energy of solvation -36.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds