Wall clock time and date at job start Mon Mar 30 2020 01:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35336 * 116.99704 * 2 1 4 4 N 1.32458 * 118.98793 * 180.02562 * 3 2 1 5 5 C 1.32000 * 120.94285 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.95674 * 0.02562 * 5 4 3 7 7 C 1.47046 * 120.91238 * 180.02562 * 6 5 4 8 8 C 1.34938 * 120.00136 * 46.13405 * 7 6 5 9 9 C 1.46279 * 119.99620 * 11.44472 * 8 7 6 10 10 O 1.21719 * 120.00460 * 6.78102 * 9 8 7 11 11 N 1.34782 * 119.99452 * 186.77713 * 9 8 7 12 12 C 1.46494 * 120.00409 * 0.27566 * 11 9 8 13 13 C 1.46510 * 119.99577 * 180.02562 * 11 9 8 14 14 C 1.50690 * 109.47172 * 89.99535 * 13 11 9 15 15 H 1.07995 * 120.00521 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99700 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00186 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47190 * 90.00217 * 18 16 14 20 20 H 1.48501 * 109.47000 * 209.99836 * 18 16 14 21 21 H 1.48497 * 109.47289 * 330.00092 * 18 16 14 22 22 C 1.40300 * 118.17940 * 0.27208 * 6 5 4 23 23 N 1.32006 * 118.95019 * 359.44677 * 22 6 5 24 24 H 1.08997 * 109.47267 * 299.99363 * 1 2 3 25 25 H 1.09003 * 109.47571 * 60.00043 * 1 2 3 26 26 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.52638 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.00341 * 226.13218 * 7 6 5 29 29 H 1.08000 * 120.00198 * 191.45047 * 8 7 6 30 30 H 1.08996 * 109.47213 * 269.72637 * 12 11 9 31 31 H 1.08998 * 109.47120 * 29.72599 * 12 11 9 32 32 H 1.08997 * 109.47136 * 149.72527 * 12 11 9 33 33 H 1.09003 * 109.46543 * 210.00139 * 13 11 9 34 34 H 1.09006 * 109.46394 * 329.99504 * 13 11 9 35 35 H 0.97000 * 120.00007 * 179.97438 * 17 16 14 36 36 H 1.07993 * 120.51956 * 179.72859 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2059 0.0000 4 7 3.3671 1.2519 -0.0005 5 6 4.0061 2.4069 -0.0010 6 6 3.2607 3.5955 -0.0005 7 6 3.9282 4.9057 -0.0016 8 6 4.9551 5.1391 -0.8454 9 6 5.2446 4.1943 -1.9239 10 8 4.4887 3.2646 -2.1380 11 7 6.3486 4.3532 -2.6806 12 6 7.2616 5.4686 -2.4191 13 6 6.6384 3.4072 -3.7611 14 6 6.0003 3.8916 -5.0374 15 1 5.4357 4.8123 -5.0434 16 6 6.1381 3.1600 -6.1980 17 7 6.8260 2.0391 -6.1909 18 14 5.3477 3.7608 -7.7803 19 1 6.3026 4.6326 -8.5106 20 1 4.9923 2.5956 -8.6295 21 1 4.1200 4.5319 -7.4587 22 6 1.8610 3.4998 0.0065 23 7 1.3023 2.3038 0.0010 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 5.0857 2.4366 -0.0019 28 1 3.5966 5.6813 0.6729 29 1 5.5632 6.0234 -0.7244 30 1 6.9587 6.3324 -3.0108 31 1 7.2291 5.7241 -1.3600 32 1 8.2764 5.1790 -2.6920 33 1 7.7170 3.3330 -3.8994 34 1 6.2368 2.4271 -3.5033 35 1 6.9226 1.5242 -7.0073 36 1 1.2504 4.3905 0.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492651303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:56 Heat of formation + Delta-G solvation = -11.843372 kcal Electronic energy + Delta-G solvation = -21135.756385 eV Core-core repulsion = 17814.084133 eV Total energy + Delta-G solvation = -3321.672252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19097 -40.65383 -39.28177 -36.70908 -35.09012 -34.80921 -34.70260 -31.22557 -29.72113 -28.45688 -27.31217 -25.88545 -25.53584 -24.54337 -22.28456 -19.86803 -19.51609 -18.98815 -18.70366 -18.14280 -17.38828 -17.13684 -16.50120 -16.10911 -15.79170 -15.53097 -15.25890 -14.91440 -14.51324 -14.35251 -14.18666 -13.84756 -13.68181 -13.43614 -13.08307 -12.90754 -12.82984 -12.52354 -12.39476 -12.22091 -12.13693 -11.85918 -11.73266 -11.00087 -10.68165 -10.65201 -10.09227 -9.36272 -9.22989 -8.24710 -6.39973 -0.41131 0.18674 0.76259 1.32458 1.35820 1.45778 1.63104 2.28231 2.48885 2.57682 2.80194 3.04410 3.09398 3.65147 3.68103 3.83886 3.93859 4.14211 4.36357 4.38011 4.46747 4.61220 4.67878 4.77605 4.80611 4.93374 5.03452 5.12176 5.20071 5.20908 5.49470 5.55323 5.73535 5.85486 6.04029 6.15944 6.68624 6.83985 7.07100 7.26703 7.52614 8.81815 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005178 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.190807 B = 5405.943495 C = 6432.869953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.315 6.315 3 C 0.477 3.523 4 N -0.568 5.568 5 C 0.242 3.758 6 C -0.203 4.203 7 C -0.002 4.002 8 C -0.202 4.202 9 C 0.512 3.488 10 O -0.594 6.594 11 N -0.605 5.605 12 C 0.078 3.922 13 C 0.261 3.739 14 C -0.540 4.540 15 H 0.052 0.948 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.967 3.033 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.190 3.810 23 N -0.577 5.577 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.200 0.800 29 H 0.180 0.820 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.022 0.978 34 H -0.006 1.006 35 H 0.266 0.734 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.631 9.402 16.487 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.217 6.217 3 C 0.176 3.824 4 N -0.294 5.294 5 C 0.076 3.924 6 C -0.208 4.208 7 C -0.022 4.022 8 C -0.222 4.222 9 C 0.304 3.696 10 O -0.477 6.477 11 N -0.335 5.335 12 C -0.064 4.064 13 C 0.139 3.861 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.199 1.199 22 C 0.027 3.973 23 N -0.307 5.307 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.175 0.825 28 H 0.216 0.784 29 H 0.197 0.803 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.012 0.988 35 H 0.075 0.925 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.335 7.551 16.227 19.743 hybrid contribution 0.258 0.345 -1.514 1.574 sum -8.076 7.896 14.713 18.548 Atomic orbital electron populations 1.23231 0.73800 1.05295 1.02905 1.86005 1.25452 1.23208 1.87080 1.20935 0.86287 0.85506 0.89705 1.67356 1.08506 1.32059 1.21517 1.23121 0.99879 0.85780 0.83616 1.20792 0.96118 0.96445 1.07436 1.22463 0.90949 0.92683 0.96112 1.23359 1.01565 1.01740 0.95550 1.19409 0.80585 0.85741 0.83834 1.90807 1.48729 1.35503 1.72657 1.48168 1.23787 1.29137 1.32377 1.21986 0.93133 0.88268 1.02994 1.18713 0.94957 0.87956 0.84474 1.21692 1.33291 1.08164 0.94717 0.92953 1.25879 0.95754 0.94850 1.02845 1.70057 1.41932 1.15598 1.29389 0.85428 0.78868 0.77980 0.78612 1.18445 1.20841 1.19869 1.23775 0.91646 0.94804 0.87094 1.67971 1.40793 0.99491 1.22432 0.90953 0.92546 0.85187 0.82480 0.78365 0.80296 0.92354 0.87344 0.91522 0.96033 0.98808 0.92471 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 10.35 113.37 1.17 2.13 16 2 O -0.32 -10.84 10.55 -86.25 -0.91 -11.75 16 3 C 0.48 17.83 8.48 180.48 1.53 19.36 16 4 N -0.57 -23.22 10.44 -312.19 -3.26 -26.48 16 5 C 0.24 8.65 8.02 85.17 0.68 9.34 16 6 C -0.20 -5.67 4.43 -19.97 -0.09 -5.76 16 7 C 0.00 -0.03 9.84 23.82 0.23 0.20 16 8 C -0.20 -4.69 9.06 23.60 0.21 -4.48 16 9 C 0.51 20.07 6.78 86.33 0.59 20.65 16 10 O -0.59 -29.38 11.95 -4.41 -0.05 -29.43 16 11 N -0.60 -25.01 2.86 -856.35 -2.45 -27.45 16 12 C 0.08 2.16 10.15 127.77 1.30 3.46 16 13 C 0.26 14.26 5.21 85.63 0.45 14.71 16 14 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 15 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 16 C 0.01 0.32 5.46 84.66 0.46 0.78 16 17 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 18 Si 0.97 45.95 29.54 68.60 2.03 47.98 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 22 C 0.19 4.92 11.10 85.17 0.95 5.86 16 23 N -0.58 -18.25 9.18 -312.19 -2.87 -21.12 16 24 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 26 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.16 5.53 7.38 -2.91 -0.02 5.51 16 28 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 29 H 0.18 2.51 6.34 -2.91 -0.02 2.49 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.91 6.19 -2.39 -0.01 1.89 16 32 H 0.07 1.86 7.89 -2.39 -0.02 1.84 16 33 H 0.02 1.20 7.89 -2.39 -0.02 1.18 16 34 H -0.01 -0.40 7.42 -2.38 -0.02 -0.42 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.22 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -86.92 315.18 1.59 -85.33 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.09 Total: 5.71 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 7.72 Total: 34.80 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -8.29 Total: -132.63 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.96 Total: -41.18 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -86.92 1.59 -85.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492651303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.486 kcal (2) G-P(sol) polarization free energy of solvation -86.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds