Wall clock time and date at job start Mon Mar 30 2020 01:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35328 * 117.00375 * 2 1 4 4 N 1.32463 * 118.99201 * 179.97438 * 3 2 1 5 5 C 1.32005 * 120.94199 * 179.97438 * 4 3 2 6 6 C 1.40288 * 118.95443 * 359.97438 * 5 4 3 7 7 C 1.47049 * 120.90540 * 180.02562 * 6 5 4 8 8 C 1.34945 * 119.99979 * 179.97438 * 7 6 5 9 9 C 1.46274 * 120.00499 * 179.97438 * 8 7 6 10 10 O 1.21723 * 119.99611 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00295 * 179.72987 * 9 8 7 12 12 C 1.46496 * 119.99875 * 0.27186 * 11 9 8 13 13 C 1.46504 * 119.99854 * 180.27930 * 11 9 8 14 14 C 1.50697 * 109.47338 * 89.99608 * 13 11 9 15 15 H 1.08004 * 120.00186 * 359.97438 * 14 13 11 16 16 C 1.37868 * 120.00191 * 179.97438 * 14 13 11 17 17 N 1.31519 * 119.99987 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00212 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47166 * 90.00477 * 18 16 14 20 20 H 1.48502 * 109.46887 * 209.99965 * 18 16 14 21 21 H 1.48501 * 109.47027 * 330.00019 * 18 16 14 22 22 C 1.40287 * 118.18564 * 0.27271 * 6 5 4 23 23 N 1.32010 * 118.95060 * 359.45119 * 22 6 5 24 24 H 1.09000 * 109.46726 * 59.99872 * 1 2 3 25 25 H 1.08998 * 109.46758 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47047 * 300.00180 * 1 2 3 27 27 H 1.07998 * 120.51763 * 179.97438 * 5 4 3 28 28 H 1.08002 * 120.00448 * 359.97438 * 7 6 5 29 29 H 1.08002 * 119.99570 * 0.02562 * 8 7 6 30 30 H 1.09001 * 109.47017 * 90.00516 * 12 11 9 31 31 H 1.08997 * 109.47346 * 210.00204 * 12 11 9 32 32 H 1.09004 * 109.47612 * 330.00302 * 12 11 9 33 33 H 1.08999 * 109.46626 * 210.00015 * 13 11 9 34 34 H 1.08996 * 109.47068 * 329.99428 * 13 11 9 35 35 H 0.97004 * 120.00113 * 179.97438 * 17 16 14 36 36 H 1.08004 * 120.52867 * 179.70319 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 7 3.3673 1.2517 0.0005 5 6 4.0063 2.4068 0.0000 6 6 3.2610 3.5953 -0.0016 7 6 3.9287 4.9054 -0.0028 8 6 3.1937 6.0372 -0.0048 9 6 3.8578 7.3406 -0.0054 10 8 5.0733 7.4042 -0.0045 11 7 3.1237 8.4709 -0.0130 12 6 1.6608 8.3942 -0.0147 13 6 3.7889 9.7762 -0.0198 14 6 4.0190 10.2154 -1.4429 15 1 3.7018 9.5851 -2.2606 16 6 4.6343 11.4219 -1.7010 17 7 5.0209 12.1892 -0.7054 18 14 4.9188 11.9667 -3.4651 19 1 3.7466 12.7464 -3.9375 20 1 6.1363 12.8144 -3.5310 21 1 5.0998 10.7724 -4.3289 22 6 1.8614 3.4997 0.0032 23 7 1.3025 2.3038 -0.0020 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 5.0859 2.4362 0.0009 28 1 5.0072 4.9620 -0.0019 29 1 2.1152 5.9807 -0.0052 30 1 1.2965 8.3812 1.0126 31 1 1.2521 9.2609 -0.5341 32 1 1.3452 7.4834 -0.5236 33 1 3.1602 10.5069 0.4890 34 1 4.7461 9.6989 0.4958 35 1 5.4542 13.0379 -0.8870 36 1 1.2507 4.3905 0.0070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492651306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:59 Heat of formation + Delta-G solvation = 7.234315 kcal Electronic energy + Delta-G solvation = -20134.997528 eV Core-core repulsion = 16814.152547 eV Total energy + Delta-G solvation = -3320.844982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47980 -39.10100 -38.60993 -35.01841 -34.48468 -34.05022 -32.62141 -30.23796 -28.13271 -27.55307 -25.94526 -25.25433 -24.38989 -22.99849 -20.83454 -19.18897 -18.82066 -17.60027 -16.88515 -16.71253 -16.51676 -15.57551 -15.30297 -14.81388 -14.60487 -14.47246 -14.30085 -14.21853 -13.89422 -12.87496 -12.55774 -12.36951 -12.35182 -12.11931 -11.85410 -11.81770 -11.34756 -11.26932 -11.19165 -10.92059 -10.58991 -10.43725 -10.18326 -9.65800 -9.50552 -9.07744 -8.46177 -8.44814 -7.66938 -6.06396 -4.11438 0.19891 0.74317 1.91801 2.25339 3.28858 3.35725 3.39945 3.48336 3.67016 3.84781 3.99148 4.20482 4.34520 4.42546 4.58974 4.65022 4.85770 4.90943 5.09497 5.19322 5.27069 5.37107 5.40732 5.62047 5.81196 5.88221 6.15509 6.21417 6.31893 6.39513 6.80881 7.04101 7.40908 7.49145 7.72525 7.89706 8.20257 8.35657 8.86430 9.02971 9.53716 11.01637 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.002997 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.112317 B = 9339.552791 C = 9447.313425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.290 6.290 3 C 0.493 3.507 4 N -0.523 5.523 5 C 0.207 3.793 6 C -0.200 4.200 7 C -0.040 4.040 8 C -0.181 4.181 9 C 0.531 3.469 10 O -0.542 6.542 11 N -0.595 5.595 12 C 0.081 3.919 13 C 0.244 3.756 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.197 3.803 23 N -0.565 5.565 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.185 0.815 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 -19.532 2.633 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.191 6.191 3 C 0.192 3.808 4 N -0.247 5.247 5 C 0.040 3.960 6 C -0.205 4.205 7 C -0.061 4.061 8 C -0.202 4.202 9 C 0.320 3.680 10 O -0.422 6.422 11 N -0.326 5.326 12 C -0.063 4.063 13 C 0.125 3.875 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.031 3.969 23 N -0.293 5.293 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.201 0.799 28 H 0.161 0.839 29 H 0.142 0.858 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.169 -20.535 2.676 23.071 hybrid contribution 0.143 1.399 -1.006 1.729 sum -10.026 -19.137 1.671 21.668 Atomic orbital electron populations 1.23018 0.75530 1.03603 1.03016 1.86054 1.23495 1.22800 1.86729 1.20839 0.86270 0.84813 0.88842 1.67553 1.07397 1.30448 1.19281 1.23482 1.00850 0.84823 0.86870 1.20686 0.95441 0.96057 1.08283 1.21911 1.00653 0.88588 0.94960 1.23304 1.00183 0.93426 1.03287 1.18050 0.87220 0.84271 0.78487 1.90795 1.13519 1.87350 1.50521 1.48082 1.05979 1.08155 1.70384 1.21698 0.81531 1.02485 1.00549 1.19329 0.93753 0.76832 0.97613 1.21421 1.39222 1.03705 0.92206 0.92428 1.24940 0.95258 0.96424 0.97507 1.69933 1.40475 1.12088 1.30869 0.86486 0.77709 0.78568 0.84600 1.20640 1.21055 1.19867 1.23344 0.91961 0.94315 0.87245 1.68019 1.41216 0.99148 1.20948 0.91759 0.87826 0.91764 0.79859 0.83909 0.85776 0.93567 0.90616 0.92371 0.94866 0.93672 0.92676 0.80643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.35 101.05 1.05 1.35 16 2 O -0.29 -3.24 10.55 -17.68 -0.19 -3.43 16 3 C 0.49 6.06 8.48 -91.00 -0.77 5.29 16 4 N -0.52 -6.50 10.44 -14.33 -0.15 -6.65 16 5 C 0.21 2.13 11.10 -16.71 -0.19 1.95 16 6 C -0.20 -2.13 5.90 -104.79 -0.62 -2.74 16 7 C -0.04 -0.49 9.49 -37.18 -0.35 -0.85 16 8 C -0.18 -2.53 8.62 -37.52 -0.32 -2.86 16 9 C 0.53 10.73 7.60 -13.03 -0.10 10.63 16 10 O -0.54 -13.30 15.81 5.17 0.08 -13.22 16 11 N -0.60 -12.32 2.86 -184.67 -0.53 -12.85 16 12 C 0.08 1.21 10.15 59.84 0.61 1.82 16 13 C 0.24 6.30 5.16 -5.19 -0.03 6.28 16 14 C -0.53 -14.81 9.39 -34.45 -0.32 -15.13 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 18 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.20 2.00 10.68 -16.71 -0.18 1.82 16 23 N -0.56 -6.37 9.18 -14.33 -0.13 -6.50 16 24 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.14 1.84 7.52 -52.49 -0.39 1.45 16 29 H 0.12 1.31 4.30 -52.49 -0.23 1.08 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 32 H 0.06 0.68 6.09 -51.93 -0.32 0.36 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.18 1.33 6.30 -52.48 -0.33 1.00 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -35.25 319.77 -5.85 -41.09 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -4.14 Total: -3.45 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.32 Total: 9.18 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.07 Total: -51.67 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.10 Total: -16.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.25 -5.85 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492651306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.325 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds