Wall clock time and date at job start Mon Mar 30 2020 01:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35328 * 117.00375 * 2 1 4 4 N 1.32463 * 118.99201 * 179.97438 * 3 2 1 5 5 C 1.32005 * 120.94199 * 179.97438 * 4 3 2 6 6 C 1.40288 * 118.95443 * 359.97438 * 5 4 3 7 7 C 1.47049 * 120.90540 * 180.02562 * 6 5 4 8 8 C 1.34945 * 119.99979 * 179.97438 * 7 6 5 9 9 C 1.46274 * 120.00499 * 179.97438 * 8 7 6 10 10 O 1.21723 * 119.99611 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00295 * 179.72987 * 9 8 7 12 12 C 1.46496 * 119.99875 * 0.27186 * 11 9 8 13 13 C 1.46504 * 119.99854 * 180.27930 * 11 9 8 14 14 C 1.50697 * 109.47338 * 89.99608 * 13 11 9 15 15 H 1.08004 * 120.00186 * 359.97438 * 14 13 11 16 16 C 1.37868 * 120.00191 * 179.97438 * 14 13 11 17 17 N 1.31519 * 119.99987 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00212 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47166 * 90.00477 * 18 16 14 20 20 H 1.48502 * 109.46887 * 209.99965 * 18 16 14 21 21 H 1.48501 * 109.47027 * 330.00019 * 18 16 14 22 22 C 1.40287 * 118.18564 * 0.27271 * 6 5 4 23 23 N 1.32010 * 118.95060 * 359.45119 * 22 6 5 24 24 H 1.09000 * 109.46726 * 59.99872 * 1 2 3 25 25 H 1.08998 * 109.46758 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47047 * 300.00180 * 1 2 3 27 27 H 1.07998 * 120.51763 * 179.97438 * 5 4 3 28 28 H 1.08002 * 120.00448 * 359.97438 * 7 6 5 29 29 H 1.08002 * 119.99570 * 0.02562 * 8 7 6 30 30 H 1.09001 * 109.47017 * 90.00516 * 12 11 9 31 31 H 1.08997 * 109.47346 * 210.00204 * 12 11 9 32 32 H 1.09004 * 109.47612 * 330.00302 * 12 11 9 33 33 H 1.08999 * 109.46626 * 210.00015 * 13 11 9 34 34 H 1.08996 * 109.47068 * 329.99428 * 13 11 9 35 35 H 0.97004 * 120.00113 * 179.97438 * 17 16 14 36 36 H 1.08004 * 120.52867 * 179.70319 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 7 3.3673 1.2517 0.0005 5 6 4.0063 2.4068 0.0000 6 6 3.2610 3.5953 -0.0016 7 6 3.9287 4.9054 -0.0028 8 6 3.1937 6.0372 -0.0048 9 6 3.8578 7.3406 -0.0054 10 8 5.0733 7.4042 -0.0045 11 7 3.1237 8.4709 -0.0130 12 6 1.6608 8.3942 -0.0147 13 6 3.7889 9.7762 -0.0198 14 6 4.0190 10.2154 -1.4429 15 1 3.7018 9.5851 -2.2606 16 6 4.6343 11.4219 -1.7010 17 7 5.0209 12.1892 -0.7054 18 14 4.9188 11.9667 -3.4651 19 1 3.7466 12.7464 -3.9375 20 1 6.1363 12.8144 -3.5310 21 1 5.0998 10.7724 -4.3289 22 6 1.8614 3.4997 0.0032 23 7 1.3025 2.3038 -0.0020 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 5.0859 2.4362 0.0009 28 1 5.0072 4.9620 -0.0019 29 1 2.1152 5.9807 -0.0052 30 1 1.2965 8.3812 1.0126 31 1 1.2521 9.2609 -0.5341 32 1 1.3452 7.4834 -0.5236 33 1 3.1602 10.5069 0.4890 34 1 4.7461 9.6989 0.4958 35 1 5.4542 13.0379 -0.8870 36 1 1.2507 4.3905 0.0070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492651306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:59 Heat of formation + Delta-G solvation = -20.150270 kcal Electronic energy + Delta-G solvation = -20136.185013 eV Core-core repulsion = 16814.152547 eV Total energy + Delta-G solvation = -3322.032466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30543 -40.59415 -39.45626 -36.63989 -35.56597 -34.93403 -34.66943 -31.32981 -29.71812 -28.42031 -27.32748 -26.24800 -25.59584 -24.44672 -22.12954 -20.07410 -19.81797 -18.83509 -18.66204 -18.07953 -17.48288 -17.01173 -16.40966 -16.21561 -15.92729 -15.69280 -15.44333 -15.05564 -14.68728 -14.45272 -14.24694 -13.75888 -13.47325 -13.38785 -12.96990 -12.90203 -12.76111 -12.59371 -12.45634 -12.31043 -12.18999 -12.11114 -11.70975 -11.35181 -10.70062 -10.63160 -10.33108 -9.54199 -9.24663 -8.21216 -6.36402 -0.72957 -0.03667 0.85170 1.37787 1.40698 1.51147 1.52940 2.29187 2.45016 2.48690 2.75745 2.90520 3.08066 3.39050 3.57579 3.60705 3.78037 4.13176 4.24811 4.39646 4.39932 4.50234 4.62804 4.72246 4.76631 4.95786 5.00913 5.03661 5.20814 5.27790 5.35604 5.56870 5.58975 5.86031 6.02390 6.06904 6.71294 6.80991 6.90306 7.29081 7.48581 8.85545 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.002997 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.112317 B = 9339.552791 C = 9447.313425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.486 3.514 4 N -0.549 5.549 5 C 0.213 3.787 6 C -0.208 4.208 7 C -0.005 4.005 8 C -0.197 4.197 9 C 0.522 3.478 10 O -0.604 6.604 11 N -0.605 5.605 12 C 0.075 3.925 13 C 0.257 3.743 14 C -0.542 4.542 15 H 0.054 0.946 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.968 3.032 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.273 1.273 22 C 0.206 3.794 23 N -0.570 5.570 24 H 0.065 0.935 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.209 0.791 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.025 0.975 34 H -0.001 1.001 35 H 0.267 0.733 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 -21.005 1.682 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.185 3.815 4 N -0.274 5.274 5 C 0.047 3.953 6 C -0.213 4.213 7 C -0.026 4.026 8 C -0.217 4.217 9 C 0.314 3.686 10 O -0.488 6.488 11 N -0.335 5.335 12 C -0.067 4.067 13 C 0.135 3.865 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.207 1.207 21 H -0.197 1.197 22 C 0.040 3.960 23 N -0.299 5.299 24 H 0.084 0.916 25 H 0.149 0.851 26 H 0.085 0.915 27 H 0.226 0.774 28 H 0.151 0.849 29 H 0.183 0.817 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.161 -22.034 1.731 25.227 hybrid contribution 0.717 1.704 -0.650 1.959 sum -11.445 -20.330 1.080 23.355 Atomic orbital electron populations 1.23301 0.73532 1.05557 1.03189 1.86051 1.25539 1.22707 1.86360 1.21144 0.86554 0.85469 0.88343 1.67621 1.07848 1.31292 1.20619 1.23935 1.02061 0.84262 0.85065 1.20507 0.95857 0.94995 1.09986 1.21896 1.00261 0.89028 0.91454 1.23008 1.01833 0.90053 1.06797 1.18998 0.86730 0.86042 0.76839 1.90753 1.16283 1.88375 1.53354 1.48088 1.08467 1.06487 1.70469 1.22027 0.77744 1.04149 1.02808 1.18783 0.92062 0.79551 0.96072 1.21702 1.39397 1.03939 0.93016 0.92802 1.25871 0.94826 0.96514 1.02035 1.70054 1.41115 1.12554 1.33163 0.85404 0.78143 0.78126 0.79064 1.18796 1.20692 1.19728 1.23852 0.91998 0.94913 0.85209 1.68123 1.40965 0.99215 1.21561 0.91579 0.85099 0.91488 0.77435 0.84910 0.81687 0.90889 0.91561 0.88258 0.95679 0.98326 0.92395 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.35 113.37 1.17 1.63 16 2 O -0.31 -6.34 10.55 -86.16 -0.91 -7.24 16 3 C 0.49 11.01 8.48 180.48 1.53 12.54 16 4 N -0.55 -12.70 10.44 -312.20 -3.26 -15.96 16 5 C 0.21 3.94 11.10 85.17 0.95 4.88 16 6 C -0.21 -3.87 5.90 -19.97 -0.12 -3.99 16 7 C -0.01 -0.11 9.49 23.82 0.23 0.11 16 8 C -0.20 -5.06 8.62 23.60 0.20 -4.86 16 9 C 0.52 21.17 7.60 86.33 0.66 21.83 16 10 O -0.60 -30.87 15.81 -4.42 -0.07 -30.94 16 11 N -0.61 -25.16 2.86 -856.37 -2.45 -27.60 16 12 C 0.07 2.06 10.15 127.77 1.30 3.36 16 13 C 0.26 13.83 5.16 85.63 0.44 14.27 16 14 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.37 5.46 84.65 0.46 0.83 16 17 N -0.93 -56.17 13.29 21.44 0.28 -55.89 16 18 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.21 3.46 10.68 85.16 0.91 4.37 16 23 N -0.57 -11.29 9.18 -312.19 -2.87 -14.16 16 24 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 25 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 27 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.13 3.33 7.52 -2.91 -0.02 3.31 16 29 H 0.17 2.73 4.30 -2.91 -0.01 2.72 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 32 H 0.10 1.91 6.09 -2.38 -0.01 1.89 16 33 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 34 H 0.00 -0.09 7.42 -2.39 -0.02 -0.10 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.21 2.08 6.30 -2.91 -0.02 2.06 16 Total: -1.00 -80.33 319.77 1.83 -78.50 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.10 Total: 2.50 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 7.97 Total: 24.05 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -8.29 Total: -113.61 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.98 Total: -38.18 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -80.33 1.83 -78.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492651306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.345 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds