Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35330 * 117.00099 * 2 1 4 4 N 1.32463 * 118.98895 * 179.97438 * 3 2 1 5 5 C 1.32006 * 120.94034 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.95614 * 0.02562 * 5 4 3 7 7 C 1.47050 * 120.90743 * 180.02562 * 6 5 4 8 8 C 1.34944 * 119.99821 * 46.12125 * 7 6 5 9 9 C 1.46279 * 120.00233 * 11.44777 * 8 7 6 10 10 O 1.21714 * 119.99697 * 6.72523 * 9 8 7 11 11 N 1.34774 * 119.99987 * 186.45751 * 9 8 7 12 12 C 1.46500 * 119.99887 * 180.27591 * 11 9 8 13 13 C 1.53002 * 109.47026 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47148 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99604 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00114 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00186 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46998 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47334 * 119.99365 * 18 16 14 21 21 H 1.48504 * 109.46757 * 239.99644 * 18 16 14 22 22 C 1.40293 * 118.17974 * 0.26649 * 6 5 4 23 23 N 1.32003 * 118.95742 * 359.45506 * 22 6 5 24 24 H 1.09005 * 109.46947 * 60.00002 * 1 2 3 25 25 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46850 * 300.00264 * 1 2 3 27 27 H 1.07996 * 120.52114 * 179.97438 * 5 4 3 28 28 H 1.07992 * 120.00067 * 226.11839 * 7 6 5 29 29 H 1.07999 * 119.99920 * 191.43873 * 8 7 6 30 30 H 0.97001 * 120.00114 * 0.26679 * 11 9 8 31 31 H 1.09000 * 109.46505 * 299.99305 * 12 11 9 32 32 H 1.08993 * 109.47253 * 59.99429 * 12 11 9 33 33 H 1.08996 * 109.46841 * 299.99875 * 13 12 11 34 34 H 1.09002 * 109.46768 * 59.99549 * 13 12 11 35 35 H 0.96999 * 119.99393 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.51923 * 179.70472 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3673 1.2517 0.0005 5 6 4.0063 2.4068 0.0000 6 6 3.2609 3.5954 -0.0005 7 6 3.9286 4.9056 -0.0016 8 6 4.9563 5.1384 -0.8445 9 6 5.2469 4.1931 -1.9223 10 8 4.4915 3.2629 -2.1360 11 7 6.3482 4.3551 -2.6821 12 6 6.6360 3.4118 -3.7654 13 6 7.9333 3.8203 -4.4662 14 6 8.2297 2.8496 -5.5802 15 1 7.5600 2.0237 -5.7691 16 6 9.3564 3.0154 -6.3574 17 7 10.1721 4.0210 -6.1269 18 14 9.7234 1.8126 -7.7387 19 1 8.6588 0.7787 -7.7907 20 1 9.7690 2.5420 -9.0313 21 1 11.0346 1.1604 -7.4917 22 6 1.8613 3.4997 0.0053 23 7 1.3024 2.3038 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 5.0858 2.4364 0.0009 28 1 3.5963 5.6815 0.6721 29 1 5.5643 6.0228 -0.7235 30 1 6.9502 5.0964 -2.5118 31 1 6.7454 2.4084 -3.3539 32 1 5.8164 3.4225 -4.4839 33 1 7.8235 4.8237 -4.8777 34 1 8.7530 3.8099 -3.7479 35 1 10.9646 4.1377 -6.6740 36 1 1.2507 4.3905 0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492691839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = -1.664662 kcal Electronic energy + Delta-G solvation = -20350.576659 eV Core-core repulsion = 17029.345788 eV Total energy + Delta-G solvation = -3321.230870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19760 -39.47700 -38.26485 -35.17888 -34.05204 -33.78153 -32.88544 -30.46859 -29.32546 -27.65008 -25.31922 -24.55210 -23.96601 -22.12992 -20.86624 -19.46498 -18.87122 -17.97660 -17.22416 -16.43651 -16.35553 -15.46189 -15.26299 -14.76936 -14.65471 -14.55360 -14.29783 -13.92206 -13.57545 -13.40291 -13.02481 -12.87644 -12.30636 -12.13622 -11.52373 -11.23995 -11.19223 -11.07910 -10.86659 -10.63479 -10.38260 -10.13457 -9.87993 -9.56414 -9.27763 -9.06392 -8.57245 -8.39031 -8.29972 -6.11474 -4.14174 0.50423 1.16195 1.63490 2.55694 3.27676 3.35282 3.40539 3.47091 3.69524 3.81271 4.00537 4.40969 4.50378 4.59884 4.73815 4.86384 5.05694 5.09852 5.15340 5.25897 5.28242 5.39935 5.70452 5.90605 6.01647 6.15510 6.30828 6.36653 6.70044 6.71817 6.84299 7.12182 7.48738 7.58154 7.86814 7.94950 8.09633 8.25178 8.56929 8.92055 9.51026 11.00164 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.003392 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.854634 B = 8253.440309 C = 9250.192572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.292 6.292 3 C 0.499 3.501 4 N -0.526 5.526 5 C 0.262 3.738 6 C -0.204 4.204 7 C -0.025 4.025 8 C -0.196 4.196 9 C 0.527 3.473 10 O -0.550 6.550 11 N -0.711 5.711 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.194 3.806 23 N -0.576 5.576 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.167 0.833 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.399 0.601 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 2.835 15.901 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.193 6.193 3 C 0.198 3.802 4 N -0.251 5.251 5 C 0.095 3.905 6 C -0.209 4.209 7 C -0.046 4.046 8 C -0.217 4.217 9 C 0.314 3.686 10 O -0.430 6.430 11 N -0.359 5.359 12 C -0.002 4.002 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.030 3.970 23 N -0.306 5.306 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.184 0.816 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.233 0.767 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.397 0.983 15.628 22.673 hybrid contribution 0.902 0.858 -0.935 1.557 sum -15.495 1.841 14.693 21.433 Atomic orbital electron populations 1.22952 0.75985 1.03308 1.02718 1.86049 1.23147 1.23136 1.86941 1.20750 0.86293 0.84564 0.88567 1.67511 1.07222 1.30357 1.19977 1.23073 0.99857 0.84863 0.82711 1.20415 0.95626 0.95681 1.09190 1.21941 0.92884 0.93540 0.96285 1.23225 1.00028 1.01607 0.96819 1.18477 0.81666 0.85343 0.83078 1.90831 1.48045 1.32982 1.71174 1.46345 1.24301 1.31293 1.33964 1.21751 0.99993 0.91447 0.86978 1.19328 0.90234 0.97558 0.95381 1.21088 1.08232 1.11697 1.14981 0.92213 1.24997 0.96014 0.95621 0.97662 1.69966 1.13592 1.29808 1.39959 0.86456 0.78322 0.81091 0.81727 1.19563 1.20925 1.20884 1.22961 0.91276 0.94177 0.88612 1.67908 1.41086 0.99193 1.22405 0.91937 0.88076 0.92064 0.81641 0.84244 0.84496 0.76719 0.92357 0.92545 0.95961 0.95889 0.92885 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 10.35 101.05 1.05 1.49 16 2 O -0.29 -4.22 10.55 -17.68 -0.19 -4.41 16 3 C 0.50 7.87 8.48 -91.00 -0.77 7.10 16 4 N -0.53 -8.89 10.44 -14.33 -0.15 -9.04 16 5 C 0.26 3.87 8.01 -16.70 -0.13 3.74 16 6 C -0.20 -2.49 4.43 -104.78 -0.46 -2.95 16 7 C -0.03 -0.23 9.84 -37.18 -0.37 -0.60 16 8 C -0.20 -2.03 9.94 -37.52 -0.37 -2.40 16 9 C 0.53 8.15 6.92 -13.03 -0.09 8.06 16 10 O -0.55 -10.48 12.37 5.18 0.06 -10.42 16 11 N -0.71 -11.65 5.55 -61.75 -0.34 -12.00 16 12 C 0.12 2.52 5.61 -4.04 -0.02 2.49 16 13 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.19 2.24 11.10 -16.71 -0.19 2.06 16 23 N -0.58 -7.94 9.18 -14.33 -0.13 -8.07 16 24 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.17 2.30 7.38 -52.49 -0.39 1.91 16 28 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 29 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.40 5.53 8.45 -40.82 -0.34 5.19 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -34.62 319.52 -6.63 -41.25 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.50 Total: 0.80 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.91 Total: 5.92 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.11 Total: -54.39 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.12 Total: -14.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.62 -6.63 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492691839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.582 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds