Wall clock time and date at job start Mon Mar 30 2020 02:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35330 * 117.00099 * 2 1 4 4 N 1.32463 * 118.98895 * 179.97438 * 3 2 1 5 5 C 1.32006 * 120.94034 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.95614 * 0.02562 * 5 4 3 7 7 C 1.47050 * 120.90743 * 180.02562 * 6 5 4 8 8 C 1.34944 * 119.99821 * 46.12125 * 7 6 5 9 9 C 1.46279 * 120.00233 * 11.44777 * 8 7 6 10 10 O 1.21714 * 119.99697 * 6.72523 * 9 8 7 11 11 N 1.34774 * 119.99987 * 186.45751 * 9 8 7 12 12 C 1.46500 * 119.99887 * 180.27591 * 11 9 8 13 13 C 1.53002 * 109.47026 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47148 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99604 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00114 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00186 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46998 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47334 * 119.99365 * 18 16 14 21 21 H 1.48504 * 109.46757 * 239.99644 * 18 16 14 22 22 C 1.40293 * 118.17974 * 0.26649 * 6 5 4 23 23 N 1.32003 * 118.95742 * 359.45506 * 22 6 5 24 24 H 1.09005 * 109.46947 * 60.00002 * 1 2 3 25 25 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46850 * 300.00264 * 1 2 3 27 27 H 1.07996 * 120.52114 * 179.97438 * 5 4 3 28 28 H 1.07992 * 120.00067 * 226.11839 * 7 6 5 29 29 H 1.07999 * 119.99920 * 191.43873 * 8 7 6 30 30 H 0.97001 * 120.00114 * 0.26679 * 11 9 8 31 31 H 1.09000 * 109.46505 * 299.99305 * 12 11 9 32 32 H 1.08993 * 109.47253 * 59.99429 * 12 11 9 33 33 H 1.08996 * 109.46841 * 299.99875 * 13 12 11 34 34 H 1.09002 * 109.46768 * 59.99549 * 13 12 11 35 35 H 0.96999 * 119.99393 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.51923 * 179.70472 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3673 1.2517 0.0005 5 6 4.0063 2.4068 0.0000 6 6 3.2609 3.5954 -0.0005 7 6 3.9286 4.9056 -0.0016 8 6 4.9563 5.1384 -0.8445 9 6 5.2469 4.1931 -1.9223 10 8 4.4915 3.2629 -2.1360 11 7 6.3482 4.3551 -2.6821 12 6 6.6360 3.4118 -3.7654 13 6 7.9333 3.8203 -4.4662 14 6 8.2297 2.8496 -5.5802 15 1 7.5600 2.0237 -5.7691 16 6 9.3564 3.0154 -6.3574 17 7 10.1721 4.0210 -6.1269 18 14 9.7234 1.8126 -7.7387 19 1 8.6588 0.7787 -7.7907 20 1 9.7690 2.5420 -9.0313 21 1 11.0346 1.1604 -7.4917 22 6 1.8613 3.4997 0.0053 23 7 1.3024 2.3038 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 5.0858 2.4364 0.0009 28 1 3.5963 5.6815 0.6721 29 1 5.5643 6.0228 -0.7235 30 1 6.9502 5.0964 -2.5118 31 1 6.7454 2.4084 -3.3539 32 1 5.8164 3.4225 -4.4839 33 1 7.8235 4.8237 -4.8777 34 1 8.7530 3.8099 -3.7479 35 1 10.9646 4.1377 -6.6740 36 1 1.2507 4.3905 0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492691839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:15 Heat of formation + Delta-G solvation = -29.825554 kcal Electronic energy + Delta-G solvation = -20351.797806 eV Core-core repulsion = 17029.345788 eV Total energy + Delta-G solvation = -3322.452018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21771 -40.70184 -39.28974 -36.72679 -35.10454 -34.89721 -34.73716 -31.93572 -30.66414 -28.51260 -27.02255 -25.55755 -25.18717 -23.50678 -22.47486 -20.61372 -19.85518 -18.99144 -18.65092 -18.12231 -17.40546 -16.77882 -16.56648 -16.45819 -15.99681 -15.59270 -15.41203 -15.01337 -14.71982 -14.49491 -14.37671 -14.16908 -13.98298 -13.22577 -12.97661 -12.90576 -12.55825 -12.40762 -12.28184 -12.18645 -11.91065 -11.65786 -11.45387 -11.04252 -10.87965 -10.62361 -10.14728 -9.93152 -9.27262 -8.26564 -6.36663 -0.45045 0.16668 0.70130 1.38646 1.39951 1.52869 1.62198 2.31394 2.36065 2.51704 2.78499 3.07877 3.08145 3.61689 3.66469 3.83675 3.97172 4.15246 4.36827 4.38121 4.47134 4.49592 4.62248 4.68806 4.79315 4.84105 5.10639 5.17846 5.29866 5.42546 5.51258 5.57114 5.71850 5.78013 6.14892 6.15042 6.70591 6.76776 7.05590 7.32772 7.34393 8.85349 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.003392 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.854634 B = 8253.440309 C = 9250.192572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.315 6.315 3 C 0.479 3.521 4 N -0.567 5.567 5 C 0.240 3.760 6 C -0.206 4.206 7 C 0.004 3.996 8 C -0.204 4.204 9 C 0.522 3.478 10 O -0.591 6.591 11 N -0.710 5.710 12 C 0.143 3.857 13 C 0.024 3.976 14 C -0.548 4.548 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.193 3.807 23 N -0.577 5.577 24 H 0.059 0.941 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.161 0.839 28 H 0.196 0.804 29 H 0.178 0.822 30 H 0.413 0.587 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 4.467 16.748 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.217 6.217 3 C 0.178 3.822 4 N -0.293 5.293 5 C 0.074 3.926 6 C -0.211 4.211 7 C -0.017 4.017 8 C -0.224 4.224 9 C 0.313 3.687 10 O -0.474 6.474 11 N -0.360 5.360 12 C 0.019 3.981 13 C -0.014 4.014 14 C -0.587 4.587 15 H 0.072 0.928 16 C -0.190 4.190 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.201 1.201 22 C 0.030 3.970 23 N -0.307 5.307 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.089 0.911 27 H 0.178 0.822 28 H 0.213 0.787 29 H 0.195 0.805 30 H 0.249 0.751 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -17.484 2.644 16.499 24.184 hybrid contribution 1.164 0.346 -1.147 1.671 sum -16.320 2.990 15.351 22.604 Atomic orbital electron populations 1.23235 0.73761 1.05297 1.02951 1.86014 1.25448 1.23243 1.86971 1.20956 0.86292 0.85481 0.89518 1.67391 1.08422 1.32004 1.21490 1.23183 1.00016 0.85687 0.83700 1.20779 0.96120 0.96343 1.07864 1.22440 0.90785 0.92675 0.95777 1.23235 1.01564 1.01768 0.95848 1.19387 0.80283 0.85463 0.83570 1.90831 1.49201 1.34975 1.72370 1.46136 1.25507 1.31057 1.33255 1.21128 0.97551 0.91689 0.87754 1.19122 0.91428 0.96249 0.94567 1.21492 1.08575 1.12306 1.16289 0.92792 1.25836 0.95771 0.97345 1.00062 1.70054 1.14059 1.31216 1.41076 0.85429 0.78234 0.78863 0.78733 1.19329 1.20023 1.20064 1.23788 0.91631 0.94801 0.86810 1.68000 1.40837 0.99512 1.22373 0.92251 0.85283 0.91148 0.82173 0.78677 0.80481 0.75110 0.94044 0.94188 0.97163 0.97126 0.92469 0.76809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.35 113.37 1.17 1.96 16 2 O -0.31 -9.34 10.55 -86.18 -0.91 -10.25 16 3 C 0.48 15.37 8.48 180.48 1.53 16.90 16 4 N -0.57 -19.92 10.44 -312.19 -3.26 -23.18 16 5 C 0.24 7.16 8.01 85.17 0.68 7.84 16 6 C -0.21 -4.59 4.43 -19.97 -0.09 -4.68 16 7 C 0.00 0.05 9.84 23.83 0.23 0.28 16 8 C -0.20 -3.50 9.94 23.60 0.23 -3.27 16 9 C 0.52 15.68 6.92 86.33 0.60 16.28 16 10 O -0.59 -22.71 12.37 -4.39 -0.05 -22.77 16 11 N -0.71 -23.15 5.55 -467.49 -2.60 -25.74 16 12 C 0.14 6.16 5.61 86.38 0.48 6.65 16 13 C 0.02 1.20 5.09 29.85 0.15 1.35 16 14 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 15 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 16 C 0.01 0.50 5.46 84.65 0.46 0.96 16 17 N -0.92 -54.13 13.29 21.45 0.28 -53.85 16 18 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 C 0.19 3.97 11.10 85.17 0.95 4.91 16 23 N -0.58 -15.31 9.18 -312.19 -2.87 -18.18 16 24 H 0.06 1.12 8.09 -2.38 -0.02 1.10 16 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.16 4.64 7.38 -2.91 -0.02 4.62 16 28 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 29 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.41 11.08 8.45 -92.71 -0.78 10.30 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -78.74 319.52 -0.42 -79.16 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.32 Total: 10.27 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.64 Total: 18.36 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -8.44 Total: -120.95 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.96 Total: -33.02 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -78.74 -0.42 -79.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492691839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.335 kcal (2) G-P(sol) polarization free energy of solvation -78.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds