Wall clock time and date at job start Mon Mar 30 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36439 * 124.81877 * 2 1 4 4 C 1.34433 * 109.14284 * 179.74809 * 3 2 1 5 5 C 1.46790 * 106.41470 * 0.40273 * 4 3 2 6 6 C 1.46771 * 127.03476 * 179.86116 * 5 4 3 7 7 C 1.35186 * 120.00359 * 359.68374 * 6 5 4 8 8 C 1.41703 * 120.00627 * 179.97438 * 7 6 5 9 9 O 1.21763 * 119.99642 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00239 * 179.72970 * 8 7 6 11 11 C 1.46495 * 119.99663 * 180.27891 * 10 8 7 12 12 C 1.50709 * 109.46983 * 179.97438 * 11 10 8 13 13 O 1.21287 * 119.99649 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00228 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99931 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00191 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99788 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46726 * 60.00017 * 19 17 15 21 21 H 1.48496 * 109.47105 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47194 * 299.99814 * 19 17 15 23 23 C 1.34835 * 124.81853 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47340 * 269.98110 * 1 2 3 25 25 H 1.08996 * 109.47025 * 29.98186 * 1 2 3 26 26 H 1.09000 * 109.47133 * 149.97484 * 1 2 3 27 27 H 1.07997 * 125.42537 * 0.02562 * 3 2 1 28 28 H 1.08001 * 126.79688 * 180.26644 * 4 3 2 29 29 H 1.08001 * 119.99725 * 179.68859 * 6 5 4 30 30 H 1.08002 * 119.99386 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99736 * 0.27161 * 10 8 7 32 32 H 1.08999 * 109.47534 * 299.99482 * 11 10 8 33 33 H 1.08997 * 109.47774 * 59.99894 * 11 10 8 34 34 H 0.97003 * 119.99587 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99613 * 180.02562 * 18 17 15 36 36 H 1.08005 * 125.92232 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2440 1.1201 0.0000 4 6 3.5383 0.7569 0.0056 5 6 3.5573 -0.7109 -0.0006 6 6 4.7402 -1.5797 -0.0006 7 6 5.9781 -1.0363 -0.0009 8 6 7.1202 -1.8750 -0.0004 9 8 6.9867 -3.0853 -0.0001 10 7 8.3542 -1.3332 -0.0063 11 6 9.5349 -2.2004 -0.0119 12 6 10.7809 -1.3526 -0.0184 13 8 10.6913 -0.1431 -0.0179 14 7 11.9946 -1.9385 -0.0238 15 6 13.1281 -1.1672 -0.0292 16 1 13.0483 -0.0902 -0.0296 17 6 14.3794 -1.7712 -0.0353 18 7 14.4763 -3.0818 -0.0353 19 14 15.9237 -0.7204 -0.0434 20 1 15.9452 0.1372 1.1688 21 1 17.1206 -1.5994 -0.0485 22 1 15.9331 0.1364 -1.2563 23 6 2.2348 -1.1070 -0.0005 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.8790 2.1365 0.0004 28 1 4.3948 1.4148 0.0110 29 1 4.6218 -2.6532 -0.0004 30 1 6.0964 0.0372 -0.0008 31 1 8.4606 -0.3690 -0.0068 32 1 9.5279 -2.8296 0.8781 33 1 9.5194 -2.8297 -0.9017 34 1 12.0662 -2.9059 -0.0238 35 1 15.3499 -3.5034 -0.0392 36 1 1.8786 -2.1266 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493395176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:07 Heat of formation + Delta-G solvation = -8.260619 kcal Electronic energy + Delta-G solvation = -19470.639215 eV Core-core repulsion = 16149.122323 eV Total energy + Delta-G solvation = -3321.516892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21499 -39.49188 -38.05337 -34.52019 -34.20904 -33.52122 -31.81931 -31.30926 -29.31428 -27.88713 -26.38895 -24.59907 -22.97401 -20.72214 -19.96675 -19.56895 -18.85434 -17.98110 -17.43091 -16.85686 -15.63993 -15.50093 -15.27099 -15.07355 -14.57958 -14.34502 -14.01374 -13.67848 -13.56852 -13.28644 -13.12334 -12.81550 -12.72611 -12.35579 -12.09053 -11.86182 -11.58211 -11.40024 -11.06233 -10.46668 -10.26361 -10.26096 -9.62607 -9.57249 -8.71340 -8.63585 -8.55646 -8.04374 -7.84365 -6.46013 -3.87865 1.00344 2.12770 2.59710 2.95079 3.17945 3.24875 3.28646 3.71244 3.78530 3.88376 4.17460 4.31488 4.63149 4.66680 4.71509 4.91902 4.97246 5.07079 5.20282 5.22617 5.42297 5.57516 5.76440 5.89352 6.02591 6.07832 6.15920 6.44504 6.47676 6.73159 6.87088 6.88553 7.01552 7.50954 7.97812 8.03257 8.51433 8.67022 9.10124 9.45691 9.94095 10.70930 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.056253 B = 0.002366 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.630876 B =11832.158404 C =12309.315917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.449 5.449 3 C -0.023 4.023 4 C -0.170 4.170 5 C -0.172 4.172 6 C 0.027 3.973 7 C -0.230 4.230 8 C 0.548 3.452 9 O -0.566 6.566 10 N -0.706 5.706 11 C 0.109 3.891 12 C 0.429 3.571 13 O -0.597 6.597 14 N -0.551 5.551 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.896 5.896 19 Si 0.934 3.066 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.026 3.974 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.163 0.837 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.411 0.589 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.274 0.726 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.098 4.355 0.019 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.124 5.124 3 C -0.149 4.149 4 C -0.194 4.194 5 C -0.179 4.179 6 C 0.007 3.993 7 C -0.251 4.251 8 C 0.339 3.661 9 O -0.449 6.449 10 N -0.359 5.359 11 C -0.019 4.019 12 C 0.215 3.785 13 O -0.484 6.484 14 N -0.186 5.186 15 C -0.434 4.434 16 H 0.122 0.878 17 C -0.178 4.178 18 N -0.536 5.536 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.107 4.107 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.180 0.820 28 H 0.163 0.837 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -26.395 4.226 0.018 26.731 hybrid contribution 0.941 0.376 0.006 1.013 sum -25.454 4.602 0.025 25.867 Atomic orbital electron populations 1.22085 0.77236 1.04511 1.03395 1.43556 1.06542 1.06045 1.56238 1.21696 0.90739 0.91100 1.11389 1.22141 0.95915 0.93849 1.07489 1.19841 0.91573 0.92958 1.13554 1.21625 0.90016 0.98549 0.89157 1.21717 0.92620 1.00368 1.10432 1.17096 0.83691 0.88283 0.76994 1.90785 1.87146 1.15037 1.51893 1.45662 1.04712 1.11464 1.74017 1.20917 0.84778 0.93055 1.03138 1.19804 0.84680 0.88688 0.85320 1.90488 1.86353 1.14296 1.57240 1.41795 1.04224 1.09719 1.62829 1.19680 0.82797 0.92695 1.48226 0.87759 1.25324 0.99523 0.96056 0.96902 1.69612 1.26045 1.08481 1.49460 0.85868 0.79844 0.79094 0.79118 1.19813 1.20898 1.19808 1.22264 0.90168 0.91520 1.06755 0.90796 0.89746 0.89739 0.81972 0.83697 0.85151 0.85841 0.75145 0.89926 0.89931 0.77029 0.91598 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.03 59.84 0.66 0.88 16 2 N -0.45 -3.31 3.09 -124.12 -0.38 -3.69 16 3 C -0.02 -0.18 11.31 -16.85 -0.19 -0.38 16 4 C -0.17 -1.74 10.45 -37.47 -0.39 -2.13 16 5 C -0.17 -1.92 6.26 -103.06 -0.65 -2.57 16 6 C 0.03 0.35 9.65 -37.22 -0.36 -0.01 16 7 C -0.23 -3.25 9.36 -39.35 -0.37 -3.62 16 8 C 0.55 9.62 7.56 -14.94 -0.11 9.51 16 9 O -0.57 -11.47 16.11 5.13 0.08 -11.39 16 10 N -0.71 -12.84 5.52 -64.38 -0.36 -13.19 16 11 C 0.11 2.15 6.15 -5.19 -0.03 2.12 16 12 C 0.43 10.25 7.85 -10.98 -0.09 10.16 16 13 O -0.60 -15.80 15.24 5.55 0.08 -15.72 16 14 N -0.55 -14.08 5.29 -10.96 -0.06 -14.14 16 15 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 16 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 19 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.03 0.23 11.39 -16.30 -0.19 0.04 16 24 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.08 0.16 8.13 -51.93 -0.42 -0.27 16 26 H 0.08 0.16 8.13 -51.93 -0.42 -0.26 16 27 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 28 H 0.15 1.35 7.52 -52.49 -0.39 0.96 16 29 H 0.13 1.66 7.45 -52.49 -0.39 1.27 16 30 H 0.12 1.52 7.08 -52.49 -0.37 1.15 16 31 H 0.41 7.29 7.39 -40.82 -0.30 6.99 16 32 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.40 9.73 7.90 -40.82 -0.32 9.41 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -34.22 324.97 -6.23 -40.46 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -4.25 Total: 14.56 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.95 Total: 5.97 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.07 Total: -54.66 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: 0.17 Total: -27.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.22 -6.23 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493395176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.195 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds