Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36439 * 124.81877 * 2 1 4 4 C 1.34433 * 109.14284 * 179.74809 * 3 2 1 5 5 C 1.46790 * 106.41470 * 0.40273 * 4 3 2 6 6 C 1.46771 * 127.03476 * 179.86116 * 5 4 3 7 7 C 1.35186 * 120.00359 * 359.68374 * 6 5 4 8 8 C 1.41703 * 120.00627 * 179.97438 * 7 6 5 9 9 O 1.21763 * 119.99642 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00239 * 179.72970 * 8 7 6 11 11 C 1.46495 * 119.99663 * 180.27891 * 10 8 7 12 12 C 1.50709 * 109.46983 * 179.97438 * 11 10 8 13 13 O 1.21287 * 119.99649 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00228 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99931 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00191 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99788 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46726 * 60.00017 * 19 17 15 21 21 H 1.48496 * 109.47105 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47194 * 299.99814 * 19 17 15 23 23 C 1.34835 * 124.81853 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47340 * 269.98110 * 1 2 3 25 25 H 1.08996 * 109.47025 * 29.98186 * 1 2 3 26 26 H 1.09000 * 109.47133 * 149.97484 * 1 2 3 27 27 H 1.07997 * 125.42537 * 0.02562 * 3 2 1 28 28 H 1.08001 * 126.79688 * 180.26644 * 4 3 2 29 29 H 1.08001 * 119.99725 * 179.68859 * 6 5 4 30 30 H 1.08002 * 119.99386 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99736 * 0.27161 * 10 8 7 32 32 H 1.08999 * 109.47534 * 299.99482 * 11 10 8 33 33 H 1.08997 * 109.47774 * 59.99894 * 11 10 8 34 34 H 0.97003 * 119.99587 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99613 * 180.02562 * 18 17 15 36 36 H 1.08005 * 125.92232 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2440 1.1201 0.0000 4 6 3.5383 0.7569 0.0056 5 6 3.5573 -0.7109 -0.0006 6 6 4.7402 -1.5797 -0.0006 7 6 5.9781 -1.0363 -0.0009 8 6 7.1202 -1.8750 -0.0004 9 8 6.9867 -3.0853 -0.0001 10 7 8.3542 -1.3332 -0.0063 11 6 9.5349 -2.2004 -0.0119 12 6 10.7809 -1.3526 -0.0184 13 8 10.6913 -0.1431 -0.0179 14 7 11.9946 -1.9385 -0.0238 15 6 13.1281 -1.1672 -0.0292 16 1 13.0483 -0.0902 -0.0296 17 6 14.3794 -1.7712 -0.0353 18 7 14.4763 -3.0818 -0.0353 19 14 15.9237 -0.7204 -0.0434 20 1 15.9452 0.1372 1.1688 21 1 17.1206 -1.5994 -0.0485 22 1 15.9331 0.1364 -1.2563 23 6 2.2348 -1.1070 -0.0005 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.8790 2.1365 0.0004 28 1 4.3948 1.4148 0.0110 29 1 4.6218 -2.6532 -0.0004 30 1 6.0964 0.0372 -0.0008 31 1 8.4606 -0.3690 -0.0068 32 1 9.5279 -2.8296 0.8781 33 1 9.5194 -2.8297 -0.9017 34 1 12.0662 -2.9059 -0.0238 35 1 15.3499 -3.5034 -0.0392 36 1 1.8786 -2.1266 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493395176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = -32.327407 kcal Electronic energy + Delta-G solvation = -19471.682829 eV Core-core repulsion = 16149.122323 eV Total energy + Delta-G solvation = -3322.560507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85933 -40.99412 -39.89664 -36.25299 -35.35440 -35.08885 -33.37616 -32.53927 -30.20139 -29.23704 -27.24271 -26.30958 -24.07564 -21.64892 -21.36897 -20.83503 -20.17189 -19.77353 -18.47672 -17.90579 -17.23942 -16.76710 -16.68017 -16.34871 -16.09510 -15.73250 -15.37395 -15.16938 -14.80671 -14.17574 -13.96640 -13.70162 -13.60689 -13.53334 -13.49361 -13.21141 -12.97990 -12.89286 -12.46705 -12.28623 -12.12661 -11.56121 -11.17881 -11.05154 -10.55705 -10.16452 -10.06864 -9.35967 -8.67532 -8.50280 -6.00848 -0.00620 1.38728 1.42887 1.46471 1.54370 1.89968 1.99725 2.07613 2.19801 2.40038 2.69606 3.15461 3.16507 3.91308 4.01366 4.13672 4.16695 4.28543 4.34463 4.45345 4.45377 4.50145 4.62645 4.65198 4.77747 5.05682 5.10706 5.32920 5.38921 5.46847 5.61861 5.92320 5.93121 6.20113 6.44439 6.47886 6.63820 7.03483 7.26545 7.44793 7.94822 8.66458 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.056253 B = 0.002366 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.630876 B =11832.158404 C =12309.315917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.445 5.445 3 C -0.019 4.019 4 C -0.196 4.196 5 C -0.218 4.218 6 C 0.058 3.942 7 C -0.264 4.264 8 C 0.552 3.448 9 O -0.600 6.600 10 N -0.709 5.709 11 C 0.122 3.878 12 C 0.433 3.567 13 O -0.624 6.624 14 N -0.559 5.559 15 C -0.339 4.339 16 H 0.086 0.914 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.999 3.001 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.043 3.957 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.191 0.809 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.412 0.588 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.159 4.861 -0.004 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.119 5.119 3 C -0.146 4.146 4 C -0.219 4.219 5 C -0.225 4.225 6 C 0.037 3.963 7 C -0.285 4.285 8 C 0.346 3.654 9 O -0.485 6.485 10 N -0.362 5.362 11 C -0.006 4.006 12 C 0.220 3.780 13 O -0.512 6.512 14 N -0.195 5.195 15 C -0.468 4.468 16 H 0.104 0.896 17 C -0.213 4.213 18 N -0.556 5.556 19 Si 0.822 3.178 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.093 4.093 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.208 0.792 28 H 0.161 0.839 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.250 0.750 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -28.493 4.741 -0.005 28.885 hybrid contribution 1.304 0.225 0.016 1.324 sum -27.188 4.966 0.011 27.638 Atomic orbital electron populations 1.22425 0.74422 1.06268 1.04762 1.43934 1.08287 1.05370 1.54285 1.22131 0.90208 0.92540 1.09684 1.22333 0.97174 0.93660 1.08783 1.19922 0.92048 0.93468 1.17036 1.21757 0.90341 0.98687 0.85474 1.21536 0.91798 1.00524 1.14664 1.17523 0.83961 0.88159 0.75790 1.90754 1.87453 1.16413 1.53893 1.45672 1.04550 1.11311 1.74625 1.20746 0.83344 0.92535 1.04014 1.20436 0.85384 0.88685 0.83529 1.90462 1.86970 1.15787 1.58018 1.41845 1.04436 1.09748 1.63453 1.19717 0.84264 0.92287 1.50546 0.89579 1.26172 1.02009 0.97350 0.95747 1.69682 1.27119 1.09618 1.49185 0.84895 0.76155 0.77610 0.79108 1.19472 1.19529 1.19462 1.22705 0.89558 0.93074 1.03949 0.89563 0.88039 0.88120 0.79175 0.83899 0.85449 0.84632 0.74954 0.88984 0.88988 0.76693 0.91040 0.78658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.15 11.03 127.77 1.41 1.56 16 2 N -0.45 -5.16 3.09 -546.60 -1.69 -6.85 16 3 C -0.02 -0.26 11.31 83.11 0.94 0.68 16 4 C -0.20 -3.82 10.45 23.64 0.25 -3.58 16 5 C -0.22 -4.64 6.26 -18.85 -0.12 -4.75 16 6 C 0.06 1.49 9.65 23.80 0.23 1.72 16 7 C -0.26 -7.62 9.36 22.42 0.21 -7.41 16 8 C 0.55 19.77 7.56 85.10 0.64 20.41 16 9 O -0.60 -24.72 16.11 -4.55 -0.07 -24.79 16 10 N -0.71 -26.33 5.52 -475.80 -2.63 -28.95 16 11 C 0.12 4.86 6.15 85.64 0.53 5.39 16 12 C 0.43 21.12 7.85 87.66 0.69 21.80 16 13 O -0.62 -33.86 15.24 -3.05 -0.05 -33.91 16 14 N -0.56 -29.26 5.29 -306.99 -1.62 -30.88 16 15 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 16 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 17 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 18 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 19 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 C 0.04 0.64 11.39 84.19 0.96 1.60 16 24 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.10 -0.04 8.13 -2.39 -0.02 -0.06 16 26 H 0.10 -0.03 8.13 -2.39 -0.02 -0.04 16 27 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.14 2.68 7.52 -2.91 -0.02 2.66 16 29 H 0.13 3.24 7.45 -2.91 -0.02 3.22 16 30 H 0.14 3.46 7.08 -2.91 -0.02 3.44 16 31 H 0.41 15.06 7.39 -92.71 -0.69 14.37 16 32 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.40 20.03 7.90 -92.71 -0.73 19.30 16 35 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -74.15 324.97 2.97 -71.17 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.30 Total: 40.18 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 7.02 Total: 18.85 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -5.65 Total: -116.14 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.12 Total: -58.70 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -74.15 2.97 -71.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493395176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.846 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds