Wall clock time and date at job start Mon Mar 30 2020 01:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35334 * 116.99948 * 2 1 4 4 N 1.32459 * 118.99005 * 180.02562 * 3 2 1 5 5 C 1.32002 * 120.94233 * 179.97438 * 4 3 2 6 6 C 1.40299 * 118.95531 * 0.02562 * 5 4 3 7 7 C 1.47046 * 120.90711 * 179.97438 * 6 5 4 8 8 C 1.34938 * 119.99647 * 179.97438 * 7 6 5 9 9 C 1.46276 * 120.00018 * 179.97438 * 8 7 6 10 10 O 1.21718 * 119.99998 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00141 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99867 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47134 * 35.00873 * 12 11 9 14 14 C 1.53001 * 109.47618 * 275.00291 * 12 11 9 15 15 C 1.50706 * 109.47113 * 155.00212 * 12 11 9 16 16 H 1.08004 * 119.99669 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00195 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99887 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99954 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47322 * 119.99797 * 19 17 15 22 22 H 1.48501 * 109.47027 * 240.00078 * 19 17 15 23 23 C 1.40294 * 118.17738 * 0.24613 * 6 5 4 24 24 N 1.32004 * 118.95571 * 359.47447 * 23 6 5 25 25 H 1.08997 * 109.46892 * 299.99455 * 1 2 3 26 26 H 1.08991 * 109.47365 * 59.99914 * 1 2 3 27 27 H 1.09007 * 109.46610 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.52214 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.00188 * 0.02562 * 7 6 5 30 30 H 1.07999 * 120.00165 * 0.02562 * 8 7 6 31 31 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 32 32 H 1.08992 * 109.47437 * 180.02562 * 14 12 11 33 33 H 1.09002 * 109.46728 * 300.00033 * 14 12 11 34 34 H 1.08993 * 109.47026 * 59.99862 * 14 12 11 35 35 H 0.96994 * 119.99892 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.51861 * 179.72866 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3672 1.2519 -0.0005 5 6 4.0062 2.4069 -0.0010 6 6 3.2608 3.5955 -0.0005 7 6 3.9283 4.9057 -0.0005 8 6 3.1934 6.0373 -0.0005 9 6 3.8573 7.3407 0.0001 10 8 5.0728 7.4045 0.0001 11 7 3.1233 8.4710 -0.0004 12 6 3.7883 9.7763 -0.0004 13 1 4.7035 9.7178 -0.5896 14 6 4.1314 10.1740 1.4366 15 6 2.8692 10.8084 -0.6014 16 1 1.8876 10.5208 -0.9483 17 6 3.2813 12.1198 -0.7085 18 7 4.4767 12.4699 -0.2866 19 14 2.1418 13.3991 -1.4528 20 1 0.8636 12.7540 -1.8471 21 1 1.8718 14.4632 -0.4528 22 1 2.7841 13.9971 -2.6507 23 6 1.8611 3.4997 0.0059 24 7 1.3024 2.3038 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 5.0858 2.4365 -0.0010 29 1 5.0069 4.9622 -0.0013 30 1 2.1148 5.9808 -0.0001 31 1 2.1546 8.4202 -0.0008 32 1 4.6258 11.1453 1.4366 33 1 3.2161 10.2325 2.0257 34 1 4.7961 9.4276 1.8713 35 1 4.7665 13.3925 -0.3616 36 1 1.2505 4.3905 0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493592320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:07 Heat of formation + Delta-G solvation = -5.515388 kcal Electronic energy + Delta-G solvation = -19933.076650 eV Core-core repulsion = 16611.678799 eV Total energy + Delta-G solvation = -3321.397850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48987 -39.03536 -38.60337 -35.09437 -34.40873 -34.03647 -32.40773 -30.34580 -28.83525 -27.70392 -25.34651 -25.24208 -24.37637 -22.26524 -20.24171 -19.46303 -19.12039 -18.35010 -16.94202 -16.72057 -16.27726 -15.50058 -15.25592 -14.83032 -14.62890 -14.37726 -14.27739 -14.01427 -13.90237 -13.09994 -12.48250 -12.36410 -12.23389 -11.91368 -11.74364 -11.40525 -11.28272 -11.11276 -11.00632 -10.79521 -10.45137 -10.31950 -10.26796 -9.51887 -9.20408 -9.06903 -8.59098 -8.48508 -7.92195 -6.15203 -4.24576 0.18161 0.73394 1.89396 2.24448 3.21843 3.29754 3.32203 3.46978 3.66499 3.93460 3.98136 4.19825 4.33066 4.33686 4.57540 4.80815 4.85597 4.90716 5.12296 5.17443 5.20250 5.37484 5.56920 5.80214 6.23008 6.28244 6.39532 6.79405 6.81076 6.93776 7.11964 7.41056 7.53106 7.66797 7.71492 7.88460 8.11942 8.61661 8.74580 9.06740 9.43068 10.90897 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035577 B = 0.002816 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.841214 B = 9942.336792 C =10514.423116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.290 6.290 3 C 0.494 3.506 4 N -0.523 5.523 5 C 0.206 3.794 6 C -0.201 4.201 7 C -0.039 4.039 8 C -0.180 4.180 9 C 0.528 3.472 10 O -0.557 6.557 11 N -0.700 5.700 12 C 0.262 3.738 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.198 3.802 24 N -0.565 5.565 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.184 0.816 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.390 0.610 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 -19.628 1.233 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.191 6.191 3 C 0.193 3.807 4 N -0.247 5.247 5 C 0.040 3.960 6 C -0.206 4.206 7 C -0.061 4.061 8 C -0.201 4.201 9 C 0.315 3.685 10 O -0.438 6.438 11 N -0.347 5.347 12 C 0.161 3.839 13 H 0.068 0.932 14 C -0.206 4.206 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.520 5.520 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.032 3.968 24 N -0.293 5.293 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.201 0.799 29 H 0.161 0.839 30 H 0.141 0.859 31 H 0.222 0.778 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.921 -20.623 1.244 21.789 hybrid contribution -0.983 1.695 -0.364 1.993 sum -7.905 -18.928 0.879 20.531 Atomic orbital electron populations 1.23020 0.75505 1.03617 1.03035 1.86056 1.23516 1.22796 1.86708 1.20845 0.86266 0.84829 0.88785 1.67549 1.07404 1.30448 1.19308 1.23480 1.00829 0.84841 0.86893 1.20689 0.95452 0.96056 1.08415 1.21888 1.00611 0.88588 0.94966 1.23229 1.00103 0.93432 1.03339 1.18171 0.87465 0.84662 0.78239 1.90781 1.13667 1.87833 1.51535 1.46479 1.09700 1.07340 1.71146 1.18783 0.94028 0.77041 0.94076 0.93228 1.22075 0.98806 1.02403 0.97280 1.21252 1.01548 0.93049 1.41397 0.91992 1.24896 0.95304 0.98398 0.95164 1.69909 1.17958 1.18296 1.45879 0.86387 0.80606 0.81191 0.78870 1.19728 1.20862 1.20867 1.23374 0.91976 0.94354 0.87106 1.68024 1.41217 0.99162 1.20928 0.91755 0.91743 0.87813 0.79884 0.83922 0.85931 0.77775 0.89107 0.95444 0.96571 0.92592 0.80533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.35 101.05 1.05 1.35 16 2 O -0.29 -3.23 10.55 -17.69 -0.19 -3.41 16 3 C 0.49 6.01 8.48 -91.01 -0.77 5.24 16 4 N -0.52 -6.39 10.44 -14.33 -0.15 -6.54 16 5 C 0.21 2.06 11.10 -16.70 -0.19 1.88 16 6 C -0.20 -2.07 5.90 -104.78 -0.62 -2.69 16 7 C -0.04 -0.46 9.49 -37.18 -0.35 -0.81 16 8 C -0.18 -2.37 9.43 -37.53 -0.35 -2.73 16 9 C 0.53 10.03 7.70 -13.03 -0.10 9.93 16 10 O -0.56 -12.81 15.89 5.17 0.08 -12.73 16 11 N -0.70 -14.04 5.06 -56.37 -0.29 -14.33 16 12 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 13 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 14 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 15 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -24.60 11.32 55.43 0.63 -23.98 16 19 Si 0.90 20.35 29.54 -169.99 -5.02 15.32 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.20 1.98 10.68 -16.71 -0.18 1.80 16 24 N -0.56 -6.33 9.18 -14.33 -0.13 -6.47 16 25 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.73 7.52 -52.49 -0.39 1.33 16 30 H 0.12 1.20 6.16 -52.49 -0.32 0.87 16 31 H 0.39 6.60 8.52 -40.82 -0.35 6.25 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.18 1.32 6.30 -52.49 -0.33 0.99 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -32.78 319.13 -6.17 -38.96 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.18 Total: 3.83 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.74 Total: 4.54 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.06 Total: -51.32 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.10 Total: -16.14 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.78 -6.17 -38.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493592320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.442 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds