Wall clock time and date at job start Mon Mar 30 2020 01:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35334 * 116.99948 * 2 1 4 4 N 1.32459 * 118.99005 * 180.02562 * 3 2 1 5 5 C 1.32002 * 120.94233 * 179.97438 * 4 3 2 6 6 C 1.40299 * 118.95531 * 0.02562 * 5 4 3 7 7 C 1.47046 * 120.90711 * 179.97438 * 6 5 4 8 8 C 1.34938 * 119.99647 * 179.97438 * 7 6 5 9 9 C 1.46276 * 120.00018 * 179.97438 * 8 7 6 10 10 O 1.21718 * 119.99998 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00141 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99867 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47134 * 35.00873 * 12 11 9 14 14 C 1.53001 * 109.47618 * 275.00291 * 12 11 9 15 15 C 1.50706 * 109.47113 * 155.00212 * 12 11 9 16 16 H 1.08004 * 119.99669 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00195 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99887 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99954 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47322 * 119.99797 * 19 17 15 22 22 H 1.48501 * 109.47027 * 240.00078 * 19 17 15 23 23 C 1.40294 * 118.17738 * 0.24613 * 6 5 4 24 24 N 1.32004 * 118.95571 * 359.47447 * 23 6 5 25 25 H 1.08997 * 109.46892 * 299.99455 * 1 2 3 26 26 H 1.08991 * 109.47365 * 59.99914 * 1 2 3 27 27 H 1.09007 * 109.46610 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.52214 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.00188 * 0.02562 * 7 6 5 30 30 H 1.07999 * 120.00165 * 0.02562 * 8 7 6 31 31 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 32 32 H 1.08992 * 109.47437 * 180.02562 * 14 12 11 33 33 H 1.09002 * 109.46728 * 300.00033 * 14 12 11 34 34 H 1.08993 * 109.47026 * 59.99862 * 14 12 11 35 35 H 0.96994 * 119.99892 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.51861 * 179.72866 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3672 1.2519 -0.0005 5 6 4.0062 2.4069 -0.0010 6 6 3.2608 3.5955 -0.0005 7 6 3.9283 4.9057 -0.0005 8 6 3.1934 6.0373 -0.0005 9 6 3.8573 7.3407 0.0001 10 8 5.0728 7.4045 0.0001 11 7 3.1233 8.4710 -0.0004 12 6 3.7883 9.7763 -0.0004 13 1 4.7035 9.7178 -0.5896 14 6 4.1314 10.1740 1.4366 15 6 2.8692 10.8084 -0.6014 16 1 1.8876 10.5208 -0.9483 17 6 3.2813 12.1198 -0.7085 18 7 4.4767 12.4699 -0.2866 19 14 2.1418 13.3991 -1.4528 20 1 0.8636 12.7540 -1.8471 21 1 1.8718 14.4632 -0.4528 22 1 2.7841 13.9971 -2.6507 23 6 1.8611 3.4997 0.0059 24 7 1.3024 2.3038 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 5.0858 2.4365 -0.0010 29 1 5.0069 4.9622 -0.0013 30 1 2.1148 5.9808 -0.0001 31 1 2.1546 8.4202 -0.0008 32 1 4.6258 11.1453 1.4366 33 1 3.2161 10.2325 2.0257 34 1 4.7961 9.4276 1.8713 35 1 4.7665 13.3925 -0.3616 36 1 1.2505 4.3905 0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493592320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:07 Heat of formation + Delta-G solvation = -31.386232 kcal Electronic energy + Delta-G solvation = -19934.198493 eV Core-core repulsion = 16611.678799 eV Total energy + Delta-G solvation = -3322.519694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.30234 -40.51326 -39.45855 -36.79651 -35.48579 -34.91944 -34.28659 -31.58545 -30.35058 -28.41621 -27.32770 -26.15881 -25.32689 -23.61518 -21.81939 -20.82132 -19.91135 -19.47888 -18.33799 -17.72106 -17.48639 -17.08460 -16.40593 -16.03166 -15.71847 -15.67931 -15.44159 -15.04636 -14.75639 -14.62784 -14.38188 -13.69357 -13.25836 -12.96027 -12.90937 -12.88426 -12.71850 -12.58425 -12.32238 -12.26419 -12.11415 -12.10227 -11.35431 -11.07414 -10.81803 -10.58135 -10.32939 -9.78804 -9.31255 -8.16321 -6.33506 -0.72342 -0.03318 0.86209 1.45743 1.46970 1.52824 1.58777 2.36744 2.42890 2.67552 2.75883 2.91315 3.14586 3.41134 3.60864 3.72277 3.79099 4.24600 4.34881 4.38687 4.40035 4.63101 4.71674 4.77776 4.94859 5.03409 5.11542 5.23851 5.33071 5.47514 5.58173 5.63559 5.72827 5.94402 6.02475 6.12102 6.75107 6.90397 7.01112 7.34405 7.59194 8.90299 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035577 B = 0.002816 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.841214 B = 9942.336792 C =10514.423116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.306 6.306 3 C 0.485 3.515 4 N -0.548 5.548 5 C 0.213 3.787 6 C -0.208 4.208 7 C -0.005 4.005 8 C -0.196 4.196 9 C 0.525 3.475 10 O -0.607 6.607 11 N -0.699 5.699 12 C 0.268 3.732 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.545 4.545 16 H 0.075 0.925 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.972 3.028 20 H -0.258 1.258 21 H -0.279 1.279 22 H -0.285 1.285 23 C 0.204 3.796 24 N -0.571 5.571 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.131 0.869 28 H 0.211 0.789 29 H 0.136 0.864 30 H 0.163 0.837 31 H 0.407 0.593 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.013 0.987 35 H 0.265 0.735 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 -20.700 1.021 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.184 3.816 4 N -0.274 5.274 5 C 0.047 3.953 6 C -0.213 4.213 7 C -0.027 4.027 8 C -0.216 4.216 9 C 0.315 3.685 10 O -0.492 6.492 11 N -0.347 5.347 12 C 0.165 3.835 13 H 0.017 0.983 14 C -0.193 4.193 15 C -0.583 4.583 16 H 0.093 0.907 17 C -0.188 4.188 18 N -0.557 5.557 19 Si 0.797 3.203 20 H -0.182 1.182 21 H -0.205 1.205 22 H -0.211 1.211 23 C 0.039 3.961 24 N -0.300 5.300 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.227 0.773 29 H 0.154 0.846 30 H 0.180 0.820 31 H 0.243 0.757 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.255 -21.733 1.034 23.644 hybrid contribution -0.237 1.859 -0.293 1.897 sum -9.493 -19.874 0.741 22.037 Atomic orbital electron populations 1.23294 0.73571 1.05552 1.03141 1.86050 1.25503 1.22733 1.86382 1.21146 0.86582 0.85447 0.88409 1.67618 1.07783 1.31361 1.20602 1.23962 1.02092 0.84227 0.85061 1.20534 0.95750 0.95181 1.09881 1.21881 1.00329 0.88873 0.91579 1.22958 1.01812 0.90235 1.06621 1.19001 0.86937 0.86166 0.76412 1.90754 1.16056 1.88687 1.53670 1.46192 1.10575 1.06127 1.71758 1.18353 0.92479 0.79455 0.93254 0.98335 1.21898 0.99050 1.00879 0.97475 1.21594 1.02050 0.93419 1.41230 0.90673 1.25815 0.96707 1.00671 0.95558 1.70061 1.19833 1.18744 1.47044 0.85289 0.78929 0.78353 0.77705 1.18211 1.20525 1.21119 1.23864 0.92147 0.94865 0.85272 1.68116 1.41061 0.99281 1.21583 0.91577 0.91606 0.85067 0.77280 0.84598 0.81967 0.75708 0.91598 0.93991 0.96809 0.92593 0.77823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.35 113.37 1.17 1.65 16 2 O -0.31 -6.38 10.55 -86.23 -0.91 -7.29 16 3 C 0.48 11.02 8.48 180.48 1.53 12.55 16 4 N -0.55 -12.54 10.44 -312.19 -3.26 -15.81 16 5 C 0.21 3.80 11.10 85.17 0.95 4.75 16 6 C -0.21 -3.75 5.90 -19.97 -0.12 -3.87 16 7 C -0.01 -0.11 9.49 23.82 0.23 0.11 16 8 C -0.20 -4.73 9.43 23.60 0.22 -4.51 16 9 C 0.52 19.79 7.70 86.33 0.66 20.45 16 10 O -0.61 -28.67 15.89 -4.41 -0.07 -28.74 16 11 N -0.70 -27.75 5.06 -450.47 -2.28 -30.03 16 12 C 0.27 13.68 2.56 44.25 0.11 13.80 16 13 H 0.00 -0.08 7.58 -2.39 -0.02 -0.09 16 14 C -0.13 -6.72 9.26 71.98 0.67 -6.05 16 15 C -0.54 -28.27 8.73 25.60 0.22 -28.05 16 16 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 17 C 0.01 0.66 5.30 84.66 0.45 1.11 16 18 N -0.92 -52.30 11.32 21.45 0.24 -52.05 16 19 Si 0.97 41.36 29.54 68.60 2.03 43.39 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.20 3.45 10.68 85.17 0.91 4.36 16 24 N -0.57 -11.49 9.18 -312.19 -2.87 -14.36 16 25 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 26 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.14 3.13 7.52 -2.91 -0.02 3.10 16 30 H 0.16 2.53 6.16 -2.91 -0.02 2.51 16 31 H 0.41 13.10 8.52 -92.71 -0.79 12.31 16 32 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.21 2.18 6.30 -2.91 -0.02 2.16 16 Total: -1.00 -72.98 319.13 0.22 -72.77 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.33 Total: 15.82 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 7.01 Total: 16.30 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -8.17 Total: -112.25 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.98 Total: -36.03 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -72.98 0.22 -72.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493592320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.380 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds