Wall clock time and date at job start Mon Mar 30 2020 01:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35330 * 116.99951 * 2 1 4 4 N 1.32462 * 118.98775 * 180.02562 * 3 2 1 5 5 C 1.31998 * 120.94418 * 180.02562 * 4 3 2 6 6 C 1.40294 * 118.95313 * 0.02562 * 5 4 3 7 7 C 1.47050 * 120.90835 * 180.02562 * 6 5 4 8 8 C 1.34946 * 119.99941 * 132.66482 * 7 6 5 9 9 C 1.46274 * 120.00005 * 348.45014 * 8 7 6 10 10 O 1.21719 * 120.00185 * 353.21957 * 9 8 7 11 11 N 1.34777 * 120.00129 * 173.21647 * 9 8 7 12 12 C 1.46505 * 120.00052 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46745 * 35.00088 * 12 11 9 14 14 C 1.53005 * 109.46836 * 275.00188 * 12 11 9 15 15 C 1.50696 * 109.46892 * 155.00004 * 12 11 9 16 16 H 1.07999 * 120.00442 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99779 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00258 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00050 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47117 * 90.00312 * 19 17 15 21 21 H 1.48498 * 109.47120 * 210.00667 * 19 17 15 22 22 H 1.48497 * 109.47061 * 330.00331 * 19 17 15 23 23 C 1.40290 * 118.18220 * 0.26882 * 6 5 4 24 24 N 1.32000 * 118.95504 * 359.47612 * 23 6 5 25 25 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46493 * 299.99561 * 1 2 3 27 27 H 1.08991 * 109.47483 * 59.99359 * 1 2 3 28 28 H 1.08002 * 120.52755 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.00336 * 312.39214 * 7 6 5 30 30 H 1.07997 * 120.00197 * 168.45051 * 8 7 6 31 31 H 0.96995 * 119.99580 * 0.02562 * 11 9 8 32 32 H 1.09000 * 109.47215 * 60.00261 * 14 12 11 33 33 H 1.09008 * 109.46553 * 180.02562 * 14 12 11 34 34 H 1.08997 * 109.47372 * 299.99516 * 14 12 11 35 35 H 0.96997 * 120.00263 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.52183 * 179.72368 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3672 1.2518 -0.0005 5 6 4.0063 2.4067 0.0000 6 6 3.2609 3.5953 0.0016 7 6 3.9286 4.9055 0.0016 8 6 3.5282 5.8668 -0.8567 9 6 2.6139 5.5368 -1.9497 10 8 2.3115 4.3768 -2.1610 11 7 2.1063 6.5171 -2.7229 12 6 1.1910 6.1864 -3.8181 13 1 0.5684 5.3401 -3.5282 14 6 1.9988 5.8218 -5.0653 15 6 0.3149 7.3756 -4.1168 16 1 0.4287 8.2867 -3.5482 17 6 -0.6313 7.3008 -5.1169 18 7 -0.7696 6.1916 -5.8097 19 14 -1.7168 8.7751 -5.4877 20 1 -1.0617 9.6269 -6.5126 21 1 -3.0300 8.3068 -5.9991 22 1 -1.9218 9.5637 -4.2462 23 6 1.8613 3.4997 0.0084 24 7 1.3025 2.3038 0.0025 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 5.0859 2.4363 0.0000 29 1 4.7364 5.1000 0.6915 30 1 3.8827 6.8798 -0.7365 31 1 2.3475 7.4413 -2.5548 32 1 2.6325 4.9616 -4.8492 33 1 1.3178 5.5762 -5.8803 34 1 2.6215 6.6681 -5.3552 35 1 -1.4355 6.1389 -6.5130 36 1 1.2507 4.3905 0.0144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493592323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:17 Heat of formation + Delta-G solvation = 3.882381 kcal Electronic energy + Delta-G solvation = -21061.216956 eV Core-core repulsion = 17740.226624 eV Total energy + Delta-G solvation = -3320.990332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98564 -39.13036 -38.05686 -35.12999 -33.75752 -33.59604 -32.44277 -30.14103 -28.73858 -27.31740 -25.30390 -24.68727 -23.92260 -22.37953 -20.23596 -19.26431 -18.67188 -17.77167 -17.26276 -16.25572 -15.99640 -15.41791 -14.98498 -14.53639 -14.48091 -14.13835 -13.98207 -13.59167 -13.35576 -13.11878 -12.70909 -12.42199 -11.94261 -11.74744 -11.31081 -11.12219 -11.00242 -10.97499 -10.78533 -10.65530 -10.34221 -10.27399 -9.93148 -9.32249 -9.08587 -8.86120 -8.59740 -8.07333 -7.94934 -6.15871 -4.25790 0.74614 1.35613 1.85704 2.73433 3.21649 3.28724 3.30590 3.84882 3.99534 4.09723 4.28142 4.36608 4.71735 4.75985 4.90027 5.12310 5.16616 5.27194 5.33701 5.44666 5.53144 5.63659 5.92592 6.12056 6.28632 6.38628 6.78866 6.89283 6.92271 7.10696 7.34524 7.39450 7.51649 7.65423 7.86843 8.10704 8.27222 8.60272 8.73379 9.05532 9.42023 10.90018 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.004505 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.950880 B = 6213.851053 C = 7043.668857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.295 6.295 3 C 0.496 3.504 4 N -0.533 5.533 5 C 0.192 3.808 6 C -0.197 4.197 7 C -0.036 4.036 8 C -0.190 4.190 9 C 0.521 3.479 10 O -0.553 6.553 11 N -0.698 5.698 12 C 0.264 3.736 13 H 0.049 0.951 14 C -0.146 4.146 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.260 3.740 24 N -0.567 5.567 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.172 0.828 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.390 0.610 32 H 0.014 0.986 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.301 -3.033 12.807 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.196 6.196 3 C 0.195 3.805 4 N -0.259 5.259 5 C 0.027 3.973 6 C -0.202 4.202 7 C -0.058 4.058 8 C -0.211 4.211 9 C 0.308 3.692 10 O -0.434 6.434 11 N -0.344 5.344 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.205 4.205 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.729 3.271 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.093 3.907 24 N -0.296 5.296 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.189 0.811 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.222 0.778 32 H 0.033 0.967 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.490 -5.173 12.436 14.951 hybrid contribution -0.256 2.336 -0.460 2.394 sum 6.234 -2.838 11.976 13.797 Atomic orbital electron populations 1.22963 0.75837 1.03139 1.03121 1.85994 1.23295 1.23210 1.87116 1.20711 0.86179 0.84719 0.88925 1.67408 1.07451 1.30303 1.20727 1.23077 0.99947 0.85174 0.89085 1.20382 0.95692 0.95501 1.08581 1.21884 0.96567 0.90436 0.96863 1.23352 1.01321 0.99830 0.96569 1.18413 0.81458 0.86161 0.83197 1.90812 1.61113 1.19280 1.72234 1.46558 1.46294 1.08610 1.32908 1.18756 0.86314 0.97096 0.81592 0.93326 1.22069 0.99318 0.97179 1.01905 1.21202 1.18611 0.98801 1.18745 0.92054 1.24892 0.96980 0.96249 0.95558 1.69901 1.34278 1.25846 1.21995 0.86444 0.79789 0.82250 0.78596 1.20532 1.21053 1.19825 1.22926 0.91250 0.93790 0.82741 1.67957 1.40975 0.99167 1.21453 0.88187 0.92044 0.91597 0.81078 0.84544 0.84959 0.77786 0.96721 0.89182 0.95494 0.92538 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.35 101.05 1.05 1.60 16 2 O -0.29 -4.76 10.55 -17.68 -0.19 -4.95 16 3 C 0.50 8.76 8.48 -91.00 -0.77 7.98 16 4 N -0.53 -9.01 10.44 -14.33 -0.15 -9.16 16 5 C 0.19 2.68 11.10 -16.71 -0.19 2.50 16 6 C -0.20 -2.81 4.36 -104.78 -0.46 -3.27 16 7 C -0.04 -0.40 9.83 -37.18 -0.37 -0.77 16 8 C -0.19 -2.41 9.95 -37.52 -0.37 -2.78 16 9 C 0.52 9.62 6.94 -13.03 -0.09 9.53 16 10 O -0.55 -12.29 12.14 5.17 0.06 -12.23 16 11 N -0.70 -13.79 5.06 -56.37 -0.29 -14.08 16 12 C 0.26 6.58 2.56 -69.08 -0.18 6.41 16 13 H 0.05 1.41 7.57 -51.93 -0.39 1.02 16 14 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 15 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.79 11.32 55.43 0.63 -24.16 16 19 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 23 C 0.26 4.29 8.09 -16.71 -0.14 4.16 16 24 N -0.57 -10.04 9.18 -14.33 -0.13 -10.18 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 28 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.39 6.56 8.52 -40.82 -0.35 6.21 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 2.45 6.07 -51.92 -0.32 2.13 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.16 2.59 7.52 -52.49 -0.39 2.19 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -33.09 315.02 -6.27 -39.36 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.37 Total: 5.75 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -1.56 Total: 9.53 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.06 Total: -57.57 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.12 Total: -17.18 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.09 -6.27 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493592323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.241 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds