Wall clock time and date at job start Mon Mar 30 2020 01:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35330 * 116.99951 * 2 1 4 4 N 1.32462 * 118.98775 * 180.02562 * 3 2 1 5 5 C 1.31998 * 120.94418 * 180.02562 * 4 3 2 6 6 C 1.40294 * 118.95313 * 0.02562 * 5 4 3 7 7 C 1.47050 * 120.90835 * 180.02562 * 6 5 4 8 8 C 1.34946 * 119.99941 * 132.66482 * 7 6 5 9 9 C 1.46274 * 120.00005 * 348.45014 * 8 7 6 10 10 O 1.21719 * 120.00185 * 353.21957 * 9 8 7 11 11 N 1.34777 * 120.00129 * 173.21647 * 9 8 7 12 12 C 1.46505 * 120.00052 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46745 * 35.00088 * 12 11 9 14 14 C 1.53005 * 109.46836 * 275.00188 * 12 11 9 15 15 C 1.50696 * 109.46892 * 155.00004 * 12 11 9 16 16 H 1.07999 * 120.00442 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99779 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00258 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00050 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47117 * 90.00312 * 19 17 15 21 21 H 1.48498 * 109.47120 * 210.00667 * 19 17 15 22 22 H 1.48497 * 109.47061 * 330.00331 * 19 17 15 23 23 C 1.40290 * 118.18220 * 0.26882 * 6 5 4 24 24 N 1.32000 * 118.95504 * 359.47612 * 23 6 5 25 25 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46493 * 299.99561 * 1 2 3 27 27 H 1.08991 * 109.47483 * 59.99359 * 1 2 3 28 28 H 1.08002 * 120.52755 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.00336 * 312.39214 * 7 6 5 30 30 H 1.07997 * 120.00197 * 168.45051 * 8 7 6 31 31 H 0.96995 * 119.99580 * 0.02562 * 11 9 8 32 32 H 1.09000 * 109.47215 * 60.00261 * 14 12 11 33 33 H 1.09008 * 109.46553 * 180.02562 * 14 12 11 34 34 H 1.08997 * 109.47372 * 299.99516 * 14 12 11 35 35 H 0.96997 * 120.00263 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.52183 * 179.72368 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3672 1.2518 -0.0005 5 6 4.0063 2.4067 0.0000 6 6 3.2609 3.5953 0.0016 7 6 3.9286 4.9055 0.0016 8 6 3.5282 5.8668 -0.8567 9 6 2.6139 5.5368 -1.9497 10 8 2.3115 4.3768 -2.1610 11 7 2.1063 6.5171 -2.7229 12 6 1.1910 6.1864 -3.8181 13 1 0.5684 5.3401 -3.5282 14 6 1.9988 5.8218 -5.0653 15 6 0.3149 7.3756 -4.1168 16 1 0.4287 8.2867 -3.5482 17 6 -0.6313 7.3008 -5.1169 18 7 -0.7696 6.1916 -5.8097 19 14 -1.7168 8.7751 -5.4877 20 1 -1.0617 9.6269 -6.5126 21 1 -3.0300 8.3068 -5.9991 22 1 -1.9218 9.5637 -4.2462 23 6 1.8613 3.4997 0.0084 24 7 1.3025 2.3038 0.0025 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 5.0859 2.4363 0.0000 29 1 4.7364 5.1000 0.6915 30 1 3.8827 6.8798 -0.7365 31 1 2.3475 7.4413 -2.5548 32 1 2.6325 4.9616 -4.8492 33 1 1.3178 5.5762 -5.8803 34 1 2.6215 6.6681 -5.3552 35 1 -1.4355 6.1389 -6.5130 36 1 1.2507 4.3905 0.0144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493592323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:16 Heat of formation + Delta-G solvation = -23.067913 kcal Electronic energy + Delta-G solvation = -21062.385608 eV Core-core repulsion = 17740.226624 eV Total energy + Delta-G solvation = -3322.158985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18945 -40.57878 -39.27760 -36.86100 -35.00249 -34.81862 -34.30236 -31.57071 -30.31687 -28.40856 -27.36085 -25.92536 -25.13828 -23.81181 -21.91699 -20.72175 -19.85079 -18.97368 -18.77960 -17.72373 -17.38962 -17.16533 -16.35515 -16.00383 -15.72156 -15.45365 -15.33944 -14.89353 -14.56100 -14.44667 -14.23804 -13.99693 -13.66457 -12.99467 -12.94436 -12.88143 -12.73951 -12.41130 -12.29578 -12.16286 -12.10212 -11.90049 -11.12723 -11.00834 -10.77891 -10.60049 -10.11749 -9.66402 -9.24202 -8.18764 -6.36581 -0.39314 0.17530 0.74983 1.44164 1.44890 1.55451 1.61779 2.36217 2.49578 2.77759 2.79169 3.08254 3.12276 3.62818 3.73560 3.84551 4.05796 4.23507 4.31550 4.35990 4.62439 4.69877 4.72216 4.75623 4.88812 5.08077 5.14327 5.23640 5.37012 5.50766 5.61983 5.69205 5.70972 5.92761 6.09049 6.15282 6.72746 7.03462 7.05297 7.32418 7.62103 8.87460 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.004505 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.950880 B = 6213.851053 C = 7043.668857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.308 6.308 3 C 0.474 3.526 4 N -0.552 5.552 5 C 0.192 3.808 6 C -0.199 4.199 7 C -0.005 4.005 8 C -0.198 4.198 9 C 0.514 3.486 10 O -0.598 6.598 11 N -0.698 5.698 12 C 0.273 3.727 13 H -0.005 1.005 14 C -0.131 4.131 15 C -0.545 4.545 16 H 0.076 0.924 17 C 0.013 3.987 18 N -0.920 5.920 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.289 1.289 22 H -0.261 1.261 23 C 0.236 3.764 24 N -0.588 5.588 25 H 0.137 0.863 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.218 0.782 29 H 0.197 0.803 30 H 0.178 0.822 31 H 0.406 0.594 32 H 0.007 0.993 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.264 0.736 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -1.053 14.354 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.210 6.210 3 C 0.173 3.827 4 N -0.278 5.278 5 C 0.028 3.972 6 C -0.203 4.203 7 C -0.025 4.025 8 C -0.218 4.218 9 C 0.304 3.696 10 O -0.482 6.482 11 N -0.346 5.346 12 C 0.169 3.831 13 H 0.012 0.988 14 C -0.190 4.190 15 C -0.583 4.583 16 H 0.094 0.906 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.215 1.215 22 H -0.186 1.186 23 C 0.070 3.930 24 N -0.318 5.318 25 H 0.155 0.845 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.235 0.765 29 H 0.214 0.786 30 H 0.195 0.805 31 H 0.242 0.758 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.435 -3.153 14.017 16.661 hybrid contribution -0.842 1.624 -0.896 2.037 sum 7.592 -1.530 13.121 15.236 Atomic orbital electron populations 1.23175 0.74278 1.05299 1.02368 1.85978 1.24922 1.22973 1.87127 1.20992 0.86795 0.85057 0.89885 1.67486 1.07158 1.31866 1.21248 1.23891 1.01841 0.84158 0.87339 1.20773 0.94824 0.97606 1.07138 1.22421 0.96101 0.87605 0.96405 1.23309 1.00690 1.02479 0.95366 1.19419 0.81230 0.85060 0.83916 1.90809 1.62731 1.21181 1.73516 1.46267 1.46039 1.10029 1.32251 1.18248 0.86748 0.95093 0.82973 0.98758 1.21879 0.98616 0.97341 1.01203 1.21565 1.18690 0.99344 1.18683 0.90618 1.25827 0.98468 0.98971 0.95459 1.70067 1.35055 1.28118 1.22647 0.85337 0.77448 0.78712 0.78799 1.19627 1.21492 1.18557 1.23055 0.92810 0.93294 0.83845 1.67883 1.41843 0.99803 1.22285 0.84534 0.91565 0.93532 0.76542 0.78615 0.80516 0.75819 0.97352 0.91918 0.94037 0.92676 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.11 10.35 113.37 1.17 2.28 16 2 O -0.31 -10.26 10.55 -86.18 -0.91 -11.17 16 3 C 0.47 17.18 8.48 180.48 1.53 18.71 16 4 N -0.55 -18.38 10.44 -312.19 -3.26 -21.64 16 5 C 0.19 4.94 11.10 85.17 0.95 5.88 16 6 C -0.20 -5.30 4.36 -19.97 -0.09 -5.38 16 7 C 0.00 -0.09 9.83 23.83 0.23 0.15 16 8 C -0.20 -4.28 9.95 23.60 0.23 -4.05 16 9 C 0.51 18.58 6.94 86.33 0.60 19.18 16 10 O -0.60 -27.20 12.14 -4.41 -0.05 -27.25 16 11 N -0.70 -27.28 5.06 -450.46 -2.28 -29.56 16 12 C 0.27 13.99 2.56 44.24 0.11 14.10 16 13 H -0.01 -0.34 7.57 -2.39 -0.02 -0.36 16 14 C -0.13 -6.72 9.26 71.98 0.67 -6.05 16 15 C -0.54 -28.40 8.73 25.60 0.22 -28.18 16 16 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.01 0.67 5.30 84.65 0.45 1.12 16 18 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 19 Si 0.97 41.70 29.54 68.60 2.03 43.73 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 C 0.24 7.91 8.09 85.17 0.69 8.60 16 24 N -0.59 -21.74 9.18 -312.19 -2.87 -24.60 16 25 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.07 1.57 8.09 -2.39 -0.02 1.56 16 27 H 0.05 1.33 8.09 -2.39 -0.02 1.32 16 28 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.41 12.93 8.52 -92.71 -0.79 12.14 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 3.54 6.07 -2.38 -0.01 3.53 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.16 5.17 7.52 -2.91 -0.02 5.15 16 Total: -1.00 -77.25 315.02 -0.01 -77.26 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.32 Total: 19.93 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.77 Total: 26.36 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -8.17 Total: -128.86 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.96 Total: -38.42 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -77.25 -0.01 -77.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493592323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.194 kcal (2) G-P(sol) polarization free energy of solvation -77.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds