Wall clock time and date at job start Mon Mar 30 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21272 * 119.99543 * 2 1 4 4 N 1.34775 * 120.00063 * 179.97438 * 2 1 3 5 5 C 1.39426 * 119.99796 * 185.15427 * 4 2 1 6 6 C 1.39007 * 119.63433 * 174.69348 * 5 4 2 7 7 C 1.39556 * 118.93934 * 179.97438 * 6 5 4 8 8 C 1.48155 * 120.89086 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99892 * 20.70616 * 8 7 6 10 10 N 1.34780 * 120.00438 * 200.71068 * 8 7 6 11 11 C 1.46496 * 119.99657 * 5.02746 * 10 8 7 12 12 C 1.46499 * 120.00195 * 185.03328 * 10 8 7 13 13 C 1.50701 * 109.46713 * 269.99649 * 12 10 8 14 14 H 1.07999 * 120.00289 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99965 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99568 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00154 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46593 * 90.00356 * 17 15 13 19 19 H 1.48496 * 109.47134 * 210.00171 * 17 15 13 20 20 H 1.48503 * 109.47365 * 330.00646 * 17 15 13 21 21 C 1.39984 * 118.22267 * 0.27854 * 7 6 5 22 22 C 1.38005 * 119.15458 * 359.45341 * 21 7 6 23 23 N 1.31884 * 120.99053 * 0.55891 * 22 21 7 24 24 H 1.09001 * 109.46890 * 239.99820 * 1 2 3 25 25 H 1.08993 * 109.47114 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46798 * 120.00844 * 1 2 3 27 27 H 0.96996 * 119.99953 * 5.15666 * 4 2 1 28 28 H 1.08003 * 120.53529 * 359.96298 * 6 5 4 29 29 H 1.09005 * 109.47099 * 264.44711 * 11 10 8 30 30 H 1.09000 * 109.47415 * 24.44802 * 11 10 8 31 31 H 1.09004 * 109.47156 * 144.44624 * 11 10 8 32 32 H 1.08998 * 109.47205 * 149.99599 * 12 10 8 33 33 H 1.09001 * 109.47241 * 29.99436 * 12 10 8 34 34 H 0.97006 * 119.99551 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.41819 * 179.70566 * 21 7 6 36 36 H 1.07995 * 119.49900 * 180.27698 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5710 -1.1695 0.1090 6 6 4.2497 -2.3775 0.2203 7 6 5.6411 -2.3630 0.3275 8 6 6.4079 -3.6249 0.4476 9 8 5.9123 -4.6738 0.0860 10 7 7.6552 -3.6096 0.9581 11 6 8.2114 -2.3654 1.4956 12 6 8.4547 -4.8371 0.9755 13 6 8.2080 -5.5790 2.2638 14 1 7.5238 -5.1767 2.9961 15 6 8.8550 -6.7720 2.5071 16 7 9.6879 -7.2621 1.6150 17 14 8.5498 -7.6914 4.1042 18 1 7.4132 -8.6303 3.9253 19 1 9.7681 -8.4542 4.4769 20 1 8.2252 -6.7205 5.1800 21 6 6.2924 -1.1239 0.3239 22 6 5.5433 0.0290 0.2040 23 7 4.2293 -0.0222 0.1045 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5140 -0.8899 27 1 1.6989 -2.0055 -0.0746 28 1 3.7090 -3.3124 0.2239 29 1 8.8089 -1.8732 0.7281 30 1 7.3989 -1.7066 1.8017 31 1 8.8405 -2.5908 2.3568 32 1 9.5120 -4.5831 0.8991 33 1 8.1708 -5.4676 0.1329 34 1 10.1434 -8.1013 1.7863 35 1 7.3676 -1.0711 0.4097 36 1 6.0405 0.9877 0.1960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528167661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:15 Heat of formation + Delta-G solvation = -22.294557 kcal Electronic energy + Delta-G solvation = -20800.080040 eV Core-core repulsion = 17477.954590 eV Total energy + Delta-G solvation = -3322.125450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08200 -40.84227 -39.58995 -36.90260 -36.01569 -34.88709 -33.57445 -32.00479 -30.24273 -29.48520 -27.85080 -26.19237 -24.36205 -24.25159 -22.02747 -20.60709 -19.23242 -18.73333 -18.14828 -17.60000 -17.28519 -16.93175 -16.62389 -16.38660 -16.07215 -15.87303 -15.24440 -14.91741 -14.75754 -14.46535 -14.30339 -13.93721 -13.68112 -13.40124 -13.25556 -13.05378 -12.89996 -12.63605 -12.36564 -12.18217 -11.79032 -11.70895 -11.40922 -11.05080 -10.87117 -10.66118 -10.12442 -9.54626 -9.33010 -8.24544 -6.39013 -0.27361 -0.01406 1.36965 1.39451 1.49261 1.58196 1.78902 1.95566 2.21324 2.40020 2.85681 3.05654 3.31960 3.46434 3.83039 3.87189 3.97043 4.10733 4.35576 4.53307 4.58931 4.60254 4.63274 4.67812 4.90170 4.95557 5.04056 5.09587 5.17484 5.20191 5.49769 5.63272 5.76459 6.02069 6.19904 6.57696 6.69381 6.87549 7.17145 7.26251 7.34165 8.82818 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029711 B = 0.003750 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.184907 B = 7464.387457 C = 7942.856972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.495 3.505 3 O -0.533 6.533 4 N -0.653 5.653 5 C 0.345 3.655 6 C -0.157 4.157 7 C -0.065 4.065 8 C 0.537 3.463 9 O -0.583 6.583 10 N -0.594 5.594 11 C 0.055 3.945 12 C 0.259 3.741 13 C -0.545 4.545 14 H 0.052 0.948 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.967 3.033 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.263 1.263 21 C -0.183 4.183 22 C 0.128 3.872 23 N -0.494 5.494 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.435 0.565 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.188 0.812 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.804 15.449 -1.653 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.284 3.716 3 O -0.406 6.406 4 N -0.303 5.303 5 C 0.114 3.886 6 C -0.181 4.181 7 C -0.076 4.076 8 C 0.326 3.674 9 O -0.464 6.464 10 N -0.324 5.324 11 C -0.086 4.086 12 C 0.138 3.862 13 C -0.584 4.584 14 H 0.070 0.930 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.791 3.209 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.187 1.187 21 C -0.203 4.203 22 C -0.029 4.029 23 N -0.209 5.209 24 H 0.133 0.867 25 H 0.114 0.886 26 H 0.135 0.865 27 H 0.276 0.724 28 H 0.164 0.836 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.204 0.796 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.057 16.317 -1.923 21.623 hybrid contribution 0.456 -2.270 0.605 2.393 sum -13.601 14.048 -1.318 19.598 Atomic orbital electron populations 1.21967 0.86350 1.06717 1.06885 1.22083 0.92604 0.82358 0.74521 1.90800 1.71536 1.32118 1.46142 1.43774 1.02795 1.12090 1.71601 1.18450 0.86135 0.88783 0.95226 1.21564 0.93772 0.98449 1.04313 1.20115 0.93932 0.93552 1.00050 1.18735 0.81883 0.88369 0.78440 1.90712 1.69476 1.34106 1.52143 1.48049 1.14136 1.12517 1.57676 1.22752 1.00572 0.85216 1.00039 1.18872 0.89984 0.81338 0.96007 1.21672 1.25979 1.07130 1.03593 0.92983 1.25832 0.94561 0.97835 1.00729 1.70039 1.29020 1.21008 1.36546 0.85422 0.77795 0.78519 0.79126 1.20589 1.19859 1.18738 1.23429 1.04728 0.90992 1.01193 1.23229 0.87519 0.99671 0.92481 1.67567 1.11299 1.27416 1.14660 0.86721 0.88596 0.86530 0.72442 0.83599 0.89161 0.87828 0.91138 0.94805 0.98012 0.92286 0.79557 0.78465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.32 71.24 0.74 -0.62 16 2 C 0.50 10.10 7.90 87.66 0.69 10.79 16 3 O -0.53 -16.33 15.35 -3.00 -0.05 -16.38 16 4 N -0.65 -12.80 5.39 -308.51 -1.66 -14.46 16 5 C 0.35 9.33 7.42 132.92 0.99 10.32 16 6 C -0.16 -4.61 9.51 22.77 0.22 -4.40 16 7 C -0.07 -2.11 5.61 -19.90 -0.11 -2.22 16 8 C 0.54 23.04 7.56 86.88 0.66 23.69 16 9 O -0.58 -30.51 16.25 -3.76 -0.06 -30.57 16 10 N -0.59 -25.05 2.86 -854.22 -2.44 -27.49 16 11 C 0.06 1.58 8.69 127.77 1.11 2.69 16 12 C 0.26 13.75 5.15 85.63 0.44 14.19 16 13 C -0.55 -31.22 9.39 25.60 0.24 -30.98 16 14 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.55 5.46 84.66 0.46 1.02 16 16 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 17 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 C -0.18 -4.45 7.68 22.64 0.17 -4.28 16 22 C 0.13 2.97 11.17 84.63 0.94 3.91 16 23 N -0.49 -14.29 7.86 -193.19 -1.52 -15.81 16 24 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 26 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.44 5.07 8.70 -92.71 -0.81 4.27 16 28 H 0.15 4.15 7.87 -2.91 -0.02 4.13 16 29 H 0.09 1.97 7.26 -2.38 -0.02 1.95 16 30 H 0.10 2.45 4.89 -2.39 -0.01 2.44 16 31 H 0.07 2.11 8.11 -2.38 -0.02 2.09 16 32 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 33 H 0.00 0.11 7.50 -2.39 -0.02 0.09 16 34 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 35 H 0.19 3.58 4.17 -2.91 -0.01 3.57 16 36 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -84.65 312.85 3.45 -81.20 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.32 Total: 7.91 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 6.55 Total: 24.12 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -5.34 Total: -112.79 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.11 Total: -46.94 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -84.65 3.45 -81.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528167661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.906 kcal (2) G-P(sol) polarization free energy of solvation -84.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds