Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47247 * 2 1 4 4 C 1.36805 * 119.99905 * 82.51385 * 3 2 1 5 5 H 1.08000 * 120.00325 * 171.72967 * 4 3 2 6 6 C 1.39103 * 119.99764 * 351.72627 * 4 3 2 7 7 N 1.31329 * 120.00245 * 3.29804 * 6 4 3 8 8 Si 1.86800 * 120.00004 * 183.29590 * 6 4 3 9 9 H 1.48503 * 109.47117 * 60.00042 * 8 6 4 10 10 H 1.48500 * 109.47381 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47188 * 300.00467 * 8 6 4 12 12 C 1.34773 * 120.00354 * 262.51122 * 3 2 1 13 13 O 1.21561 * 119.99832 * 173.85416 * 12 3 2 14 14 C 1.47999 * 119.99925 * 353.86096 * 12 3 2 15 15 C 1.40072 * 120.89388 * 38.02628 * 14 12 3 16 16 C 1.37959 * 119.14435 * 180.02562 * 15 14 12 17 17 N 1.31902 * 121.00005 * 0.02562 * 16 15 14 18 18 C 1.32299 * 121.97778 * 359.72004 * 17 16 15 19 19 N 1.39429 * 119.62894 * 180.27217 * 18 17 16 20 20 C 1.34772 * 120.00361 * 5.70425 * 19 18 17 21 21 C 1.50700 * 120.00119 * 184.42110 * 20 19 18 22 22 O 1.21277 * 120.00021 * 4.41666 * 20 19 18 23 23 C 1.38962 * 120.74028 * 0.54284 * 18 17 16 24 24 H 1.08998 * 109.47408 * 290.97147 * 1 2 3 25 25 H 1.09001 * 109.46695 * 50.96688 * 1 2 3 26 26 H 1.08996 * 109.47341 * 170.96548 * 1 2 3 27 27 H 1.08997 * 109.46937 * 240.00089 * 2 1 3 28 28 H 1.09003 * 109.46530 * 120.00225 * 2 1 3 29 29 H 0.96999 * 120.00070 * 179.97438 * 7 6 4 30 30 H 1.08000 * 120.42685 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.49998 * 179.97438 * 16 15 14 32 32 H 0.97003 * 119.99902 * 185.70871 * 19 18 17 33 33 H 1.08996 * 109.47363 * 90.00288 * 21 20 19 34 34 H 1.09000 * 109.47261 * 209.99862 * 21 20 19 35 35 H 1.09002 * 109.47119 * 329.99904 * 21 20 19 36 36 H 1.07993 * 120.54337 * 179.75185 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1009 2.0775 1.1747 5 1 2.5832 3.0435 1.1971 6 6 1.5634 1.5413 2.3402 7 7 1.0345 0.3393 2.3271 8 14 1.5938 2.5309 3.9242 9 1 0.8416 3.7968 3.7316 10 1 0.9646 1.7415 5.0133 11 1 3.0000 2.8411 4.2872 12 6 2.3865 1.9658 -1.1572 13 8 2.6849 3.1441 -1.1748 14 6 2.4271 1.1734 -2.4065 15 6 1.4571 0.1983 -2.6715 16 6 1.5299 -0.5198 -3.8473 17 7 2.4958 -0.3006 -4.7184 18 6 3.4304 0.6130 -4.5131 19 7 4.4259 0.8078 -5.4698 20 6 4.3686 0.1511 -6.6453 21 6 5.4942 0.2842 -7.6384 22 8 3.4113 -0.5471 -6.9039 23 6 3.4344 1.3767 -3.3522 24 1 -0.3634 0.3678 0.9596 25 1 -0.3633 0.6472 -0.7983 26 1 -0.3634 -1.0149 -0.1614 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6600 -0.0348 3.1399 30 1 0.6624 0.0110 -1.9645 31 1 0.7853 -1.2733 -4.0572 32 1 5.1597 1.4160 -5.2893 33 1 6.2381 -0.4900 -7.4505 34 1 5.1019 0.1733 -8.6493 35 1 5.9568 1.2657 -7.5339 36 1 4.2011 2.1189 -3.1861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528180019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -5.753119 kcal Electronic energy + Delta-G solvation = -21384.478230 eV Core-core repulsion = 18063.070071 eV Total energy + Delta-G solvation = -3321.408159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.98288 -40.75851 -39.50498 -37.28954 -36.00910 -34.21078 -33.08505 -32.05957 -31.31907 -29.70369 -27.55629 -25.30562 -24.29566 -23.89858 -22.33000 -20.78495 -19.41857 -18.81352 -18.00579 -17.67343 -17.30789 -16.66609 -16.49931 -16.22241 -15.94013 -15.37929 -15.29778 -14.92921 -14.78386 -14.66157 -14.13164 -13.62622 -13.38425 -13.23547 -13.05334 -12.90203 -12.73020 -12.53650 -12.18481 -12.05510 -12.04581 -11.62989 -11.32806 -10.87313 -10.86177 -10.56890 -10.09488 -9.78665 -9.27736 -8.21784 -5.94652 -0.09267 0.04212 1.39360 1.43717 1.52704 1.64047 1.85396 2.06189 2.23714 2.83478 2.93091 3.10748 3.42182 3.71148 3.91797 3.94995 4.08002 4.22737 4.49133 4.54332 4.62672 4.69095 4.72374 4.87346 4.91451 5.07232 5.13070 5.18299 5.23786 5.34609 5.59452 5.69392 5.95491 6.01896 6.24211 6.47487 6.91780 7.07829 7.30047 7.36001 7.90981 8.57259 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037997 B = 0.004246 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.727105 B = 6593.128554 C = 7114.748712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.100 3.900 3 N -0.426 5.426 4 C -0.339 4.339 5 H 0.078 0.922 6 C 0.002 3.998 7 N -0.864 5.864 8 Si 0.995 3.005 9 H -0.278 1.278 10 H -0.265 1.265 11 H -0.272 1.272 12 C 0.449 3.551 13 O -0.637 6.637 14 C -0.043 4.043 15 C -0.194 4.194 16 C 0.126 3.874 17 N -0.499 5.499 18 C 0.346 3.654 19 N -0.651 5.651 20 C 0.494 3.506 21 C -0.157 4.157 22 O -0.537 6.537 23 C -0.169 4.169 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.277 0.723 30 H 0.163 0.837 31 H 0.192 0.808 32 H 0.435 0.565 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 -4.081 -11.067 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 N -0.140 5.140 4 C -0.467 4.467 5 H 0.096 0.904 6 C -0.200 4.200 7 N -0.503 5.503 8 Si 0.819 3.181 9 H -0.203 1.203 10 H -0.189 1.189 11 H -0.197 1.197 12 C 0.239 3.761 13 O -0.527 6.527 14 C -0.055 4.055 15 C -0.216 4.216 16 C -0.030 4.030 17 N -0.215 5.215 18 C 0.115 3.885 19 N -0.300 5.300 20 C 0.284 3.716 21 C -0.216 4.216 22 O -0.410 6.410 23 C -0.193 4.193 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.181 0.819 31 H 0.208 0.792 32 H 0.275 0.725 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.143 -4.700 -11.918 13.805 hybrid contribution 0.187 1.420 1.840 2.332 sum 5.330 -3.281 -10.078 11.863 Atomic orbital electron populations 1.22241 0.95262 1.00788 1.01841 1.22287 0.95781 0.81755 1.02344 1.43972 1.52007 1.12947 1.05120 1.19776 1.37362 1.03546 0.86026 0.90356 1.26025 0.94767 0.97397 1.01827 1.70130 1.36247 1.14586 1.29352 0.84963 0.78703 0.77882 0.76588 1.20341 1.18872 1.19746 1.18330 0.86591 0.87161 0.83993 1.90547 1.58267 1.17497 1.86389 1.20225 0.95689 0.95265 0.94286 1.23113 1.01254 0.96984 1.00231 1.23009 0.94794 0.97522 0.87702 1.67528 1.03842 1.17626 1.32464 1.18432 0.90151 0.91775 0.88122 1.43785 1.25128 1.46290 1.14828 1.22141 0.89286 0.78122 0.82098 1.21926 0.95602 1.06808 0.97231 1.90797 1.35440 1.38245 1.76534 1.21488 1.01499 1.02467 0.93862 0.90651 0.95478 0.90887 0.91686 0.87814 0.91233 0.81943 0.79152 0.72466 0.86689 0.88208 0.86879 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 8.33 71.98 0.60 -5.11 16 2 C 0.10 4.38 4.88 86.38 0.42 4.80 16 3 N -0.43 -21.95 2.63 -638.67 -1.68 -23.64 16 4 C -0.34 -18.70 9.48 84.13 0.80 -17.90 16 5 H 0.08 4.64 7.22 -2.91 -0.02 4.62 16 6 C 0.00 0.12 5.32 84.98 0.45 0.57 16 7 N -0.86 -40.85 7.10 21.69 0.15 -40.69 16 8 Si 1.00 40.20 29.55 68.60 2.03 42.23 16 9 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 12 C 0.45 23.12 7.35 86.83 0.64 23.76 16 13 O -0.64 -37.29 16.55 -3.91 -0.06 -37.36 16 14 C -0.04 -1.80 5.36 -19.90 -0.11 -1.91 16 15 C -0.19 -6.95 7.48 22.65 0.17 -6.78 16 16 C 0.13 4.06 11.16 84.62 0.94 5.01 16 17 N -0.50 -17.75 7.89 -193.22 -1.52 -19.28 16 18 C 0.35 11.39 7.41 132.91 0.98 12.38 16 19 N -0.65 -15.39 5.39 -308.53 -1.66 -17.05 16 20 C 0.49 11.79 7.89 87.66 0.69 12.48 16 21 C -0.16 -1.69 10.31 71.24 0.73 -0.95 16 22 O -0.54 -18.55 15.39 -3.02 -0.05 -18.60 16 23 C -0.17 -6.10 9.58 22.79 0.22 -5.88 16 24 H 0.08 3.39 5.72 -2.39 -0.01 3.37 16 25 H 0.03 1.05 6.85 -2.39 -0.02 1.04 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.07 2.57 4.66 -2.39 -0.01 2.56 16 28 H 0.10 4.91 5.83 -2.39 -0.01 4.89 16 29 H 0.28 12.18 8.31 -92.71 -0.77 11.41 16 30 H 0.16 5.64 3.26 -2.91 -0.01 5.63 16 31 H 0.19 4.68 8.06 -2.91 -0.02 4.65 16 32 H 0.43 6.53 8.70 -92.71 -0.81 5.72 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.15 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -74.72 299.61 4.08 -70.64 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.33 Total: 23.30 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.55 Total: 20.45 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -4.72 Total: -100.66 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -0.11 Total: -55.96 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -74.72 4.08 -70.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528180019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.886 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds