Wall clock time and date at job start Mon Mar 30 2020 01:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21273 * 119.99881 * 2 1 4 4 N 1.34777 * 119.99998 * 179.97438 * 2 1 3 5 5 C 1.39424 * 119.99781 * 185.09433 * 4 2 1 6 6 C 1.39023 * 119.63197 * 174.90088 * 5 4 2 7 7 C 1.39555 * 118.92983 * 180.26862 * 6 5 4 8 8 C 1.48163 * 120.87880 * 179.77698 * 7 6 5 9 9 O 1.21508 * 120.00592 * 359.71938 * 8 7 6 10 10 N 1.34781 * 119.99371 * 179.72004 * 8 7 6 11 11 C 1.46505 * 119.99699 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47055 * 325.00247 * 11 10 8 13 13 C 1.52999 * 109.46710 * 85.00104 * 11 10 8 14 14 C 1.50695 * 109.47303 * 205.00067 * 11 10 8 15 15 H 1.08001 * 120.00036 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00279 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99988 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00322 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.46998 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47153 * 300.00401 * 18 16 14 21 21 H 1.48510 * 109.46691 * 60.00295 * 18 16 14 22 22 C 1.39973 * 118.23029 * 359.51021 * 7 6 5 23 23 C 1.38007 * 119.15657 * 0.24337 * 22 7 6 24 24 N 1.31876 * 120.98607 * 0.02562 * 23 22 7 25 25 H 1.08998 * 109.47231 * 269.99878 * 1 2 3 26 26 H 1.09002 * 109.47255 * 30.00168 * 1 2 3 27 27 H 1.09001 * 109.46954 * 150.00052 * 1 2 3 28 28 H 0.97003 * 120.00272 * 5.09437 * 4 2 1 29 29 H 1.07998 * 120.53227 * 0.04801 * 6 5 4 30 30 H 0.96993 * 120.00457 * 0.02562 * 10 8 7 31 31 H 1.08999 * 109.47245 * 60.00259 * 13 11 10 32 32 H 1.09006 * 109.47030 * 179.97438 * 13 11 10 33 33 H 1.08998 * 109.47479 * 299.99925 * 13 11 10 34 34 H 0.97003 * 120.00442 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.42107 * 180.22747 * 22 7 6 36 36 H 1.07995 * 119.50103 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5710 -1.1695 0.1077 6 6 4.2502 -2.3778 0.2147 7 6 5.6411 -2.3628 0.3269 8 6 6.4079 -3.6247 0.4483 9 8 5.8256 -4.6912 0.4561 10 7 7.7514 -3.5897 0.5500 11 6 8.5096 -4.8374 0.6705 12 1 7.9351 -5.5568 1.2540 13 6 8.7766 -5.4085 -0.7235 14 6 9.8209 -4.5638 1.3609 15 1 10.0650 -3.5608 1.6785 16 6 10.7091 -5.5937 1.5870 17 7 10.4122 -6.8150 1.1998 18 14 12.3349 -5.2544 2.4421 19 1 13.1033 -6.5192 2.5644 20 1 13.1172 -4.2741 1.6470 21 1 12.0761 -4.7002 3.7954 22 6 6.2929 -1.1241 0.3161 23 6 5.5434 0.0290 0.2010 24 7 4.2294 -0.0223 0.1023 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6988 -2.0057 -0.0737 29 1 3.7097 -3.3128 0.2145 30 1 8.2162 -2.7384 0.5442 31 1 9.3512 -4.6892 -1.3070 32 1 9.3412 -6.3367 -0.6339 33 1 7.8282 -5.6065 -1.2229 34 1 11.0373 -7.5396 1.3586 35 1 7.3686 -1.0714 0.3971 36 1 6.0405 0.9877 0.1925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528310916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:41 Heat of formation + Delta-G solvation = -26.516989 kcal Electronic energy + Delta-G solvation = -20522.332640 eV Core-core repulsion = 17200.024092 eV Total energy + Delta-G solvation = -3322.308548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92825 -39.47419 -38.34242 -35.08958 -34.93266 -32.82997 -32.14646 -31.10179 -29.27482 -28.73793 -25.34194 -24.76748 -23.30698 -21.92649 -20.49400 -19.64855 -18.57733 -17.33525 -16.85476 -16.09571 -15.90172 -15.73209 -15.19201 -14.85089 -14.58038 -14.47880 -14.01906 -13.84866 -13.70121 -13.15540 -12.93194 -12.54023 -12.48829 -11.94644 -11.77188 -11.15988 -11.02106 -10.91188 -10.81171 -10.44277 -10.37834 -10.28414 -9.74440 -9.53982 -9.14166 -9.05643 -8.61337 -8.40456 -8.04480 -6.17481 -4.27442 0.89434 1.01658 2.44242 2.64492 3.23074 3.28506 3.29392 3.38709 3.81918 4.06237 4.21908 4.31861 4.64276 4.83722 4.89755 4.99816 5.04167 5.06987 5.14374 5.15932 5.46668 5.61189 5.84066 6.02147 6.15451 6.61020 6.75903 6.88887 6.96965 7.06751 7.31800 7.46522 7.62225 7.80105 7.83379 8.07640 8.12051 8.51539 8.68365 8.94353 9.39938 10.88495 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.041224 B = 0.003314 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.046491 B = 8446.447590 C = 8871.286237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.500 3.500 3 O -0.480 6.480 4 N -0.662 5.662 5 C 0.348 3.652 6 C -0.153 4.153 7 C -0.048 4.048 8 C 0.541 3.459 9 O -0.544 6.544 10 N -0.695 5.695 11 C 0.264 3.736 12 H 0.051 0.949 13 C -0.148 4.148 14 C -0.537 4.537 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.276 1.276 22 C -0.173 4.173 23 C 0.126 3.874 24 N -0.470 5.470 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.419 0.581 29 H 0.148 0.852 30 H 0.390 0.610 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.142 0.858 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.009 10.916 -2.775 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.286 3.714 3 O -0.350 6.350 4 N -0.310 5.310 5 C 0.118 3.882 6 C -0.177 4.177 7 C -0.060 4.060 8 C 0.325 3.675 9 O -0.423 6.423 10 N -0.342 5.342 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.207 4.207 14 C -0.575 4.575 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.211 1.211 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.195 4.195 23 C -0.032 4.032 24 N -0.185 5.185 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.256 0.744 29 H 0.165 0.835 30 H 0.224 0.776 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.436 11.500 -2.830 19.456 hybrid contribution 1.383 -0.736 0.479 1.638 sum -14.053 10.765 -2.351 17.857 Atomic orbital electron populations 1.21901 0.90818 1.05172 1.05078 1.21075 0.90642 0.83347 0.76339 1.90835 1.70026 1.30406 1.43694 1.43716 1.03963 1.10899 1.72433 1.18333 0.84710 0.89529 0.95658 1.21564 0.94152 0.97921 1.04040 1.20499 0.93628 0.94619 0.97220 1.18113 0.83278 0.87599 0.78463 1.90728 1.69744 1.30637 1.51205 1.46516 1.05181 1.12316 1.70214 1.18830 0.90299 0.80481 0.94114 0.93104 1.22091 0.98529 1.02988 0.97051 1.21158 1.01745 0.95267 1.39375 0.92005 1.24882 0.98544 0.94837 0.95350 1.69885 1.36535 0.99891 1.45708 0.86482 0.82842 0.77643 0.79995 1.21088 1.20089 1.20122 1.22347 1.01926 0.92480 1.02729 1.22594 0.88114 0.98457 0.93991 1.67463 1.09945 1.26916 1.14184 0.88537 0.88548 0.89976 0.74449 0.83474 0.77598 0.95307 0.88938 0.96562 0.92419 0.83978 0.81927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.31 36.01 0.37 -0.55 16 2 C 0.50 5.36 7.90 -10.99 -0.09 5.28 16 3 O -0.48 -7.48 15.36 5.56 0.09 -7.39 16 4 N -0.66 -6.71 5.39 -11.44 -0.06 -6.77 16 5 C 0.35 4.77 7.42 -154.76 -1.15 3.62 16 6 C -0.15 -2.17 9.51 -38.80 -0.37 -2.54 16 7 C -0.05 -0.76 5.91 -104.68 -0.62 -1.38 16 8 C 0.54 10.78 7.76 -12.18 -0.09 10.69 16 9 O -0.54 -12.68 16.10 5.36 0.09 -12.60 16 10 N -0.69 -14.19 5.03 -55.78 -0.28 -14.48 16 11 C 0.26 6.58 2.56 -69.08 -0.18 6.41 16 12 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 13 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 14 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.45 11.32 55.43 0.63 -23.82 16 18 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.17 -2.30 9.61 -39.02 -0.37 -2.68 16 23 C 0.13 1.63 11.17 -17.62 -0.20 1.43 16 24 N -0.47 -7.11 7.86 -12.41 -0.10 -7.21 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.42 2.59 8.70 -40.82 -0.36 2.23 16 29 H 0.15 1.93 7.74 -52.49 -0.41 1.52 16 30 H 0.39 6.81 6.68 -40.82 -0.27 6.54 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.14 1.60 6.53 -52.49 -0.34 1.26 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -34.63 315.44 -6.82 -41.44 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.16 Total: 6.34 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.75 Total: 4.46 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.19 Total: -52.28 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.99 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.63 -6.82 -41.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528310916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.924 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds