Wall clock time and date at job start Mon Mar 30 2020 01:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21273 * 119.99881 * 2 1 4 4 N 1.34777 * 119.99998 * 179.97438 * 2 1 3 5 5 C 1.39424 * 119.99781 * 185.09433 * 4 2 1 6 6 C 1.39023 * 119.63197 * 174.90088 * 5 4 2 7 7 C 1.39555 * 118.92983 * 180.26862 * 6 5 4 8 8 C 1.48163 * 120.87880 * 179.77698 * 7 6 5 9 9 O 1.21508 * 120.00592 * 359.71938 * 8 7 6 10 10 N 1.34781 * 119.99371 * 179.72004 * 8 7 6 11 11 C 1.46505 * 119.99699 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47055 * 325.00247 * 11 10 8 13 13 C 1.52999 * 109.46710 * 85.00104 * 11 10 8 14 14 C 1.50695 * 109.47303 * 205.00067 * 11 10 8 15 15 H 1.08001 * 120.00036 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00279 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99988 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00322 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.46998 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47153 * 300.00401 * 18 16 14 21 21 H 1.48510 * 109.46691 * 60.00295 * 18 16 14 22 22 C 1.39973 * 118.23029 * 359.51021 * 7 6 5 23 23 C 1.38007 * 119.15657 * 0.24337 * 22 7 6 24 24 N 1.31876 * 120.98607 * 0.02562 * 23 22 7 25 25 H 1.08998 * 109.47231 * 269.99878 * 1 2 3 26 26 H 1.09002 * 109.47255 * 30.00168 * 1 2 3 27 27 H 1.09001 * 109.46954 * 150.00052 * 1 2 3 28 28 H 0.97003 * 120.00272 * 5.09437 * 4 2 1 29 29 H 1.07998 * 120.53227 * 0.04801 * 6 5 4 30 30 H 0.96993 * 120.00457 * 0.02562 * 10 8 7 31 31 H 1.08999 * 109.47245 * 60.00259 * 13 11 10 32 32 H 1.09006 * 109.47030 * 179.97438 * 13 11 10 33 33 H 1.08998 * 109.47479 * 299.99925 * 13 11 10 34 34 H 0.97003 * 120.00442 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.42107 * 180.22747 * 22 7 6 36 36 H 1.07995 * 119.50103 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5710 -1.1695 0.1077 6 6 4.2502 -2.3778 0.2147 7 6 5.6411 -2.3628 0.3269 8 6 6.4079 -3.6247 0.4483 9 8 5.8256 -4.6912 0.4561 10 7 7.7514 -3.5897 0.5500 11 6 8.5096 -4.8374 0.6705 12 1 7.9351 -5.5568 1.2540 13 6 8.7766 -5.4085 -0.7235 14 6 9.8209 -4.5638 1.3609 15 1 10.0650 -3.5608 1.6785 16 6 10.7091 -5.5937 1.5870 17 7 10.4122 -6.8150 1.1998 18 14 12.3349 -5.2544 2.4421 19 1 13.1033 -6.5192 2.5644 20 1 13.1172 -4.2741 1.6470 21 1 12.0761 -4.7002 3.7954 22 6 6.2929 -1.1241 0.3161 23 6 5.5434 0.0290 0.2010 24 7 4.2294 -0.0223 0.1023 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6988 -2.0057 -0.0737 29 1 3.7097 -3.3128 0.2145 30 1 8.2162 -2.7384 0.5442 31 1 9.3512 -4.6892 -1.3070 32 1 9.3412 -6.3367 -0.6339 33 1 7.8282 -5.6065 -1.2229 34 1 11.0373 -7.5396 1.3586 35 1 7.3686 -1.0714 0.3971 36 1 6.0405 0.9877 0.1925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528310916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:41 Heat of formation + Delta-G solvation = -51.573827 kcal Electronic energy + Delta-G solvation = -20523.419186 eV Core-core repulsion = 17200.024092 eV Total energy + Delta-G solvation = -3323.395094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98930 -40.74683 -39.64065 -36.81321 -36.04998 -34.50256 -33.59699 -31.97281 -30.80918 -29.78551 -27.36071 -26.08033 -24.34514 -23.34947 -21.90727 -21.09668 -19.88901 -18.49219 -18.06388 -17.59363 -17.29249 -16.74519 -16.62947 -16.11843 -16.06153 -15.92523 -15.24227 -14.87253 -14.79064 -14.68942 -14.45077 -13.73361 -13.39153 -13.06816 -13.02470 -13.01493 -12.88468 -12.74975 -12.28090 -12.16672 -11.89203 -11.42017 -11.14756 -11.07926 -10.96059 -10.60467 -10.20588 -9.85352 -9.39131 -8.18311 -6.36051 -0.31467 -0.02057 1.46489 1.48179 1.55862 1.58042 1.80985 1.99553 2.27503 2.49073 2.87749 3.12599 3.37536 3.62061 3.82042 3.88098 3.98308 4.13491 4.52768 4.58792 4.66090 4.67917 4.76397 4.90721 5.01811 5.05503 5.07507 5.16885 5.39105 5.54324 5.61755 5.66218 5.86065 6.06888 6.19558 6.69540 6.81523 6.86745 7.25663 7.26268 7.41341 8.87899 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.041224 B = 0.003314 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.046491 B = 8446.447590 C = 8871.286237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.495 3.505 3 O -0.534 6.534 4 N -0.652 5.652 5 C 0.344 3.656 6 C -0.152 4.152 7 C -0.066 4.066 8 C 0.542 3.458 9 O -0.585 6.585 10 N -0.690 5.690 11 C 0.270 3.730 12 H 0.003 0.997 13 C -0.136 4.136 14 C -0.550 4.550 15 H 0.076 0.924 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.972 3.028 19 H -0.287 1.287 20 H -0.263 1.263 21 H -0.271 1.271 22 C -0.163 4.163 23 C 0.129 3.871 24 N -0.494 5.494 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.436 0.564 29 H 0.153 0.847 30 H 0.407 0.593 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.013 0.987 34 H 0.266 0.734 35 H 0.164 0.836 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.317 12.720 -2.654 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.284 3.716 3 O -0.407 6.407 4 N -0.301 5.301 5 C 0.113 3.887 6 C -0.176 4.176 7 C -0.078 4.078 8 C 0.329 3.671 9 O -0.467 6.467 10 N -0.339 5.339 11 C 0.167 3.833 12 H 0.021 0.979 13 C -0.194 4.194 14 C -0.588 4.588 15 H 0.094 0.906 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.797 3.203 19 H -0.213 1.213 20 H -0.188 1.188 21 H -0.196 1.196 22 C -0.185 4.185 23 C -0.028 4.028 24 N -0.209 5.209 25 H 0.132 0.868 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.277 0.723 29 H 0.171 0.829 30 H 0.243 0.757 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.181 0.819 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.781 13.315 -2.718 20.826 hybrid contribution 1.385 -1.282 0.431 1.936 sum -14.396 12.033 -2.288 18.901 Atomic orbital electron populations 1.21935 0.86308 1.06871 1.06647 1.22101 0.92626 0.82385 0.74486 1.90807 1.71492 1.32188 1.46238 1.43817 1.02710 1.12093 1.71497 1.18511 0.86211 0.88850 0.95113 1.21608 0.93711 0.98537 1.03774 1.20176 0.94067 0.93438 1.00094 1.18643 0.82969 0.88584 0.76911 1.90699 1.70426 1.32703 1.52883 1.46218 1.05520 1.11651 1.70530 1.18436 0.89930 0.81374 0.93514 0.97871 1.21921 0.98183 1.02246 0.97097 1.21506 1.01936 0.95983 1.39368 0.90608 1.25782 1.02135 0.94549 0.95950 1.70035 1.37772 1.00843 1.46817 0.85393 0.78443 0.77513 0.78971 1.21253 1.18778 1.19602 1.22521 1.02959 0.91434 1.01552 1.23109 0.87580 0.99536 0.92622 1.67566 1.11060 1.27630 1.14672 0.86810 0.88273 0.86852 0.72323 0.82942 0.75671 0.93902 0.91208 0.96749 0.92461 0.81882 0.78847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.31 71.24 0.73 -0.52 16 2 C 0.49 9.82 7.90 87.66 0.69 10.51 16 3 O -0.53 -16.25 15.36 -3.01 -0.05 -16.30 16 4 N -0.65 -12.16 5.39 -308.51 -1.66 -13.82 16 5 C 0.34 9.04 7.42 132.93 0.99 10.03 16 6 C -0.15 -4.23 9.51 22.78 0.22 -4.02 16 7 C -0.07 -2.07 5.91 -19.90 -0.12 -2.18 16 8 C 0.54 21.81 7.76 86.88 0.67 22.48 16 9 O -0.59 -28.16 16.10 -3.74 -0.06 -28.22 16 10 N -0.69 -28.17 5.03 -448.67 -2.26 -30.43 16 11 C 0.27 13.75 2.56 44.24 0.11 13.87 16 12 H 0.00 0.20 7.58 -2.39 -0.02 0.19 16 13 C -0.14 -6.75 9.26 71.98 0.67 -6.08 16 14 C -0.55 -28.41 8.73 25.60 0.22 -28.19 16 15 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 16 C 0.02 0.85 5.30 84.65 0.45 1.30 16 17 N -0.92 -51.66 11.32 21.45 0.24 -51.42 16 18 Si 0.97 41.11 29.54 68.60 2.03 43.14 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 C -0.16 -4.04 9.61 22.64 0.22 -3.82 16 23 C 0.13 3.07 11.17 84.63 0.94 4.02 16 24 N -0.49 -14.29 7.86 -193.18 -1.52 -15.81 16 25 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.44 4.50 8.70 -92.71 -0.81 3.70 16 29 H 0.15 3.97 7.74 -2.91 -0.02 3.94 16 30 H 0.41 13.68 6.68 -92.71 -0.62 13.06 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 3.80 6.07 -2.38 -0.01 3.78 16 33 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.16 3.24 6.53 -2.91 -0.02 3.22 16 36 H 0.19 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -77.12 315.44 2.24 -74.88 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.29 Total: 20.57 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.80 Total: 17.40 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -5.19 Total: -111.48 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.11 Total: -44.52 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -77.12 2.24 -74.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528310916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.311 kcal (2) G-P(sol) polarization free energy of solvation -77.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds