Wall clock time and date at job start Mon Mar 30 2020 01:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 119.99923 * 2 1 4 4 N 1.34774 * 120.00198 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00422 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.46504 * 325.00354 * 5 4 2 7 7 C 1.53002 * 109.47020 * 84.99862 * 5 4 2 8 8 C 1.50697 * 109.47181 * 205.00063 * 5 4 2 9 9 O 1.21271 * 120.00114 * 359.97438 * 8 5 4 10 10 N 1.34783 * 119.99678 * 180.27156 * 8 5 4 11 11 C 1.39468 * 119.99875 * 174.84050 * 10 8 5 12 12 C 1.38591 * 119.57794 * 184.96411 * 11 10 8 13 13 C 1.40820 * 118.79471 * 179.76320 * 12 11 10 14 14 C 1.41537 * 120.99649 * 180.28432 * 13 12 11 15 15 H 1.08005 * 119.99920 * 203.94328 * 14 13 12 16 16 C 1.40031 * 120.00332 * 23.93680 * 14 13 12 17 17 N 1.30744 * 119.99840 * 16.61861 * 16 14 13 18 18 Si 1.86795 * 120.00172 * 196.61459 * 16 14 13 19 19 H 1.48506 * 109.46951 * 90.00237 * 18 16 14 20 20 H 1.48503 * 109.47490 * 210.00388 * 18 16 14 21 21 H 1.48504 * 109.47134 * 330.00390 * 18 16 14 22 22 C 1.41172 * 118.00309 * 0.50535 * 13 12 11 23 23 C 1.37592 * 119.02056 * 359.75580 * 22 13 12 24 24 N 1.32080 * 121.10457 * 359.97438 * 23 22 13 25 25 H 1.09000 * 109.47059 * 240.00331 * 1 2 3 26 26 H 1.09000 * 109.47261 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47181 * 120.00445 * 1 2 3 28 28 H 0.97008 * 119.99914 * 0.02562 * 4 2 1 29 29 H 1.09002 * 109.46680 * 180.02562 * 7 5 4 30 30 H 1.09001 * 109.47107 * 299.99962 * 7 5 4 31 31 H 1.08994 * 109.47096 * 60.00414 * 7 5 4 32 32 H 0.97001 * 119.99659 * 354.84797 * 10 8 5 33 33 H 1.08004 * 120.60728 * 0.02562 * 12 11 10 34 34 H 0.97001 * 119.99939 * 179.97438 * 17 16 14 35 35 H 1.08003 * 120.49084 * 179.78182 * 22 13 12 36 36 H 1.07990 * 119.44863 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0094 -0.3254 -0.5884 7 6 4.1553 -1.0411 1.4383 8 6 4.1484 -2.4550 -0.5989 9 8 3.3605 -3.2907 -0.9882 10 7 5.4736 -2.6806 -0.6974 11 6 5.9391 -3.9141 -1.1522 12 6 7.3004 -4.1737 -1.1525 13 6 7.7519 -5.4264 -1.6106 14 6 9.1313 -5.7432 -1.6255 15 1 9.5049 -6.4974 -2.3023 16 6 10.0118 -5.0786 -0.7629 17 7 9.5459 -4.4177 0.2645 18 14 11.8517 -5.1365 -1.0799 19 1 12.2399 -3.9983 -1.9512 20 1 12.5797 -5.0426 0.2110 21 1 12.1983 -6.4148 -1.7518 22 6 6.7878 -6.3551 -2.0589 23 6 5.4577 -6.0047 -2.0260 24 7 5.0747 -4.8206 -1.5836 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.6958 -2.0073 0.0005 29 1 5.2453 -1.0407 1.4386 30 1 3.7918 -0.1096 1.8722 31 1 3.7918 -1.8828 2.0277 32 1 6.1035 -1.9850 -0.4518 33 1 8.0021 -3.4304 -0.8038 34 1 10.1558 -3.9577 0.8623 35 1 7.0898 -7.3265 -2.4219 36 1 4.7143 -6.7096 -2.3677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:15 Heat of formation + Delta-G solvation = -63.001175 kcal Electronic energy + Delta-G solvation = -20834.697812 eV Core-core repulsion = 17510.807191 eV Total energy + Delta-G solvation = -3323.890621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65691 -40.55527 -39.49289 -36.29054 -35.94756 -35.57765 -32.71120 -32.38796 -30.47674 -29.55041 -27.92172 -25.78591 -23.87024 -23.23325 -21.59193 -21.24514 -19.52651 -19.04706 -17.96389 -17.28285 -17.13204 -16.70674 -16.48811 -16.08655 -16.04570 -15.71942 -15.12255 -14.73024 -14.63066 -14.37233 -14.27405 -13.75536 -13.47636 -13.24808 -13.18230 -12.99323 -12.93769 -12.69428 -12.63479 -12.08114 -11.91546 -11.53869 -11.16687 -11.07807 -11.02658 -10.29914 -9.95926 -9.62763 -8.90094 -8.66061 -6.57058 0.69339 0.98937 1.41720 1.52187 1.54182 1.56355 1.71838 1.83926 2.19767 2.38654 2.79143 3.39017 3.73455 3.85998 3.99351 4.06838 4.18364 4.52364 4.60574 4.67402 4.70943 4.75320 4.81721 4.91651 5.06264 5.08775 5.10496 5.21485 5.28787 5.46938 5.59914 5.89360 6.10007 6.41454 6.47782 6.55183 6.77956 6.82116 7.13594 7.17736 7.79430 8.24974 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029178 B = 0.003908 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.381752 B = 7162.513757 C = 7932.939938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.510 3.490 3 O -0.592 6.592 4 N -0.710 5.710 5 C 0.134 3.866 6 H 0.114 0.886 7 C -0.151 4.151 8 C 0.499 3.501 9 O -0.513 6.513 10 N -0.645 5.645 11 C 0.333 3.667 12 C -0.259 4.259 13 C 0.114 3.886 14 C -0.484 4.484 15 H 0.083 0.917 16 C 0.041 3.959 17 N -0.809 5.809 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.299 4.299 23 C 0.115 3.885 24 N -0.577 5.577 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.415 0.585 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.423 0.577 33 H 0.125 0.875 34 H 0.293 0.707 35 H 0.115 0.885 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 7.051 2.929 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.300 3.700 3 O -0.473 6.473 4 N -0.364 5.364 5 C 0.024 3.976 6 H 0.132 0.868 7 C -0.209 4.209 8 C 0.284 3.716 9 O -0.385 6.385 10 N -0.292 5.292 11 C 0.107 3.893 12 C -0.284 4.284 13 C 0.106 3.894 14 C -0.514 4.514 15 H 0.101 0.899 16 C -0.177 4.177 17 N -0.434 5.434 18 Si 0.807 3.193 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.322 4.322 23 C -0.039 4.039 24 N -0.297 5.297 25 H 0.131 0.869 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.253 0.747 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.262 0.738 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.305 7.577 2.909 12.348 hybrid contribution 1.905 -0.518 -0.011 1.974 sum -7.400 7.059 2.898 10.630 Atomic orbital electron populations 1.21928 0.87611 1.06389 1.06402 1.21627 0.92415 0.82163 0.73821 1.90694 1.72029 1.32644 1.51947 1.45923 1.05357 1.10290 1.74847 1.20688 0.83012 0.94645 0.99206 0.86828 1.22078 1.02631 1.03333 0.92903 1.21206 0.82319 0.89183 0.78845 1.90743 1.54931 1.46734 1.46107 1.43332 1.07947 1.13776 1.64192 1.18388 0.89393 0.86608 0.94881 1.21529 0.92462 0.99789 1.14662 1.17990 0.94057 0.90102 0.87237 1.19875 0.91982 1.20233 1.19345 0.89853 1.26792 1.06330 0.92070 0.92473 1.69796 1.39919 1.23932 1.09731 0.85130 0.75210 0.80057 0.78919 1.18573 1.19137 1.18310 1.22088 0.94035 1.00972 1.15143 1.22214 0.94306 0.92355 0.95030 1.67326 1.37568 1.03838 1.20942 0.86927 0.88465 0.87605 0.74678 0.89739 0.90369 0.91871 0.73848 0.85761 0.89595 0.86687 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 10.32 71.23 0.74 -1.42 16 2 C 0.51 11.82 7.90 87.66 0.69 12.51 16 3 O -0.59 -18.39 16.75 -3.02 -0.05 -18.45 16 4 N -0.71 -17.02 4.95 -446.10 -2.21 -19.22 16 5 C 0.13 3.56 2.98 44.24 0.13 3.70 16 6 H 0.11 3.02 7.58 -2.38 -0.02 3.01 16 7 C -0.15 -3.43 9.38 71.98 0.68 -2.76 16 8 C 0.50 17.59 7.18 87.66 0.63 18.22 16 9 O -0.51 -21.66 14.09 -3.00 -0.04 -21.70 16 10 N -0.65 -24.15 5.24 -308.66 -1.62 -25.77 16 11 C 0.33 15.79 7.42 132.75 0.98 16.77 16 12 C -0.26 -13.00 8.62 22.99 0.20 -12.80 16 13 C 0.11 5.98 5.60 -21.11 -0.12 5.86 16 14 C -0.48 -24.59 9.12 23.52 0.21 -24.37 16 15 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 16 C 0.04 1.92 5.20 85.29 0.44 2.36 16 17 N -0.81 -38.64 10.92 21.84 0.24 -38.40 16 18 Si 0.99 35.23 29.59 68.60 2.03 37.26 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 22 C -0.30 -14.51 9.90 22.84 0.23 -14.28 16 23 C 0.11 5.37 11.15 84.50 0.94 6.31 16 24 N -0.58 -28.64 7.85 -193.54 -1.52 -30.16 16 25 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.42 9.40 7.79 -92.70 -0.72 8.68 16 29 H 0.08 1.75 7.67 -2.39 -0.02 1.73 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.42 12.97 8.26 -92.71 -0.77 12.20 16 33 H 0.12 6.19 6.20 -2.91 -0.02 6.17 16 34 H 0.29 12.48 8.29 -92.71 -0.77 11.72 16 35 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.15 6.01 8.06 -2.92 -0.02 5.99 16 Total: -1.00 -68.70 315.99 2.23 -66.48 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.36 Total: 39.86 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.76 Total: 10.11 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -5.11 Total: -113.55 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.09 Total: -40.15 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -68.70 2.23 -66.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.475 kcal (2) G-P(sol) polarization free energy of solvation -68.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds