Wall clock time and date at job start Mon Mar 30 2020 01:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 119.99633 * 2 1 4 4 N 1.34774 * 120.00091 * 180.02562 * 2 1 3 5 5 C 1.46495 * 119.99922 * 5.86784 * 4 2 1 6 6 C 1.46502 * 120.00024 * 185.87160 * 4 2 1 7 7 C 1.50700 * 109.47042 * 270.00116 * 6 4 2 8 8 O 1.21274 * 120.00401 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99818 * 179.97438 * 7 6 4 10 10 C 1.39464 * 119.99730 * 185.38195 * 9 7 6 11 11 C 1.38599 * 119.58064 * 185.39297 * 10 9 7 12 12 C 1.40803 * 118.79812 * 179.70453 * 11 10 9 13 13 C 1.41543 * 120.99550 * 180.25301 * 12 11 10 14 14 H 1.08006 * 119.99946 * 145.87176 * 13 12 11 15 15 C 1.40033 * 120.00435 * 325.86766 * 13 12 11 16 16 N 1.30745 * 119.99262 * 4.20435 * 15 13 12 17 17 Si 1.86796 * 120.00440 * 184.20201 * 15 13 12 18 18 H 1.48503 * 109.46868 * 60.00007 * 17 15 13 19 19 H 1.48500 * 109.47053 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46832 * 300.00287 * 17 15 13 21 21 C 1.41171 * 118.01041 * 0.27573 * 12 11 10 22 22 C 1.37593 * 119.01161 * 359.97438 * 21 12 11 23 23 N 1.32077 * 121.10936 * 0.02562 * 22 21 12 24 24 H 1.09001 * 109.46898 * 274.11274 * 1 2 3 25 25 H 1.09001 * 109.47645 * 34.10893 * 1 2 3 26 26 H 1.08997 * 109.47366 * 154.11489 * 1 2 3 27 27 H 1.08996 * 109.47385 * 266.54004 * 5 4 2 28 28 H 1.08994 * 109.47250 * 26.54666 * 5 4 2 29 29 H 1.09006 * 109.46910 * 146.54202 * 5 4 2 30 30 H 1.08999 * 109.47107 * 149.99606 * 6 4 2 31 31 H 1.09007 * 109.47176 * 29.99720 * 6 4 2 32 32 H 0.96995 * 119.99681 * 5.38906 * 9 7 6 33 33 H 1.08008 * 120.59795 * 359.97312 * 11 10 9 34 34 H 0.97001 * 119.99362 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.49547 * 179.97438 * 21 12 11 36 36 H 1.08002 * 119.44579 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4541 -2.4325 -0.1308 6 6 3.6401 -1.1705 0.1293 7 6 4.2663 -1.0984 -1.2396 8 8 3.5631 -1.0494 -2.2264 9 7 5.6081 -1.0882 -1.3671 10 6 6.1878 -0.9085 -2.6228 11 6 7.5628 -1.0112 -2.7625 12 6 8.1301 -0.8330 -4.0389 13 6 9.5282 -0.9331 -4.2356 14 1 9.9160 -1.3379 -5.1587 15 6 10.4086 -0.5071 -3.2334 16 7 9.9406 -0.0938 -2.0847 17 14 12.2515 -0.5293 -3.5378 18 1 12.5728 0.3462 -4.6935 19 1 12.9587 -0.0343 -2.3295 20 1 12.6878 -1.9178 -3.8322 21 6 7.2627 -0.5511 -5.1164 22 6 5.9102 -0.4631 -4.8789 23 7 5.4177 -0.6370 -3.6659 24 1 -0.3633 0.0737 1.0250 25 1 -0.3634 0.8509 -0.5763 26 1 -0.3634 -0.9245 -0.4486 27 1 1.2366 -2.8303 0.8604 28 1 0.5205 -2.2618 -0.6667 29 1 2.0647 -3.1469 -0.6831 30 1 3.9585 -2.0866 0.6267 31 1 3.9545 -0.3090 0.7185 32 1 6.1704 -1.2059 -0.5856 33 1 8.1875 -1.2284 -1.9086 34 1 10.5504 0.2016 -1.3906 35 1 7.6547 -0.4068 -6.1123 36 1 5.2402 -0.2482 -5.6983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531924578.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:13 Heat of formation + Delta-G solvation = -47.349953 kcal Electronic energy + Delta-G solvation = -20940.117379 eV Core-core repulsion = 17616.905446 eV Total energy + Delta-G solvation = -3323.211933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52831 -40.61096 -39.36596 -36.56831 -36.02704 -35.46794 -32.50165 -31.90321 -30.51037 -28.71958 -27.90787 -26.96815 -23.88626 -23.51174 -21.59518 -20.30550 -19.48139 -18.66099 -18.09668 -17.69654 -17.13867 -16.80989 -16.37934 -16.13244 -16.05956 -15.66924 -15.06378 -14.58699 -14.48090 -14.32492 -14.27974 -13.93445 -13.70957 -13.33414 -13.15800 -12.92522 -12.86839 -12.69150 -12.51446 -12.18098 -11.90682 -11.47452 -11.20432 -11.19091 -10.97815 -9.96489 -9.84540 -9.53221 -8.89363 -8.53275 -6.60960 0.69359 0.99319 1.41155 1.47186 1.52286 1.54852 1.84204 1.91636 2.21618 2.35222 2.83622 3.61714 3.67590 3.71285 4.16199 4.17158 4.23849 4.33971 4.47039 4.60196 4.69929 4.79697 4.82515 4.88119 4.89283 5.07884 5.14466 5.25801 5.33134 5.44324 5.61957 5.93957 6.13543 6.33041 6.46605 6.56897 6.77747 6.84856 7.10890 7.27750 7.78579 8.33640 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033390 B = 0.003831 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.373835 B = 7306.525138 C = 7676.498332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.500 3.500 3 O -0.603 6.603 4 N -0.603 5.603 5 C 0.074 3.926 6 C 0.104 3.896 7 C 0.477 3.523 8 O -0.521 6.521 9 N -0.652 5.652 10 C 0.329 3.671 11 C -0.246 4.246 12 C 0.112 3.888 13 C -0.490 4.490 14 H 0.083 0.917 15 C 0.034 3.966 16 N -0.829 5.829 17 Si 0.994 3.006 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.257 1.257 21 C -0.288 4.288 22 C 0.106 3.894 23 N -0.575 5.575 24 H 0.122 0.878 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.110 0.890 32 H 0.424 0.576 33 H 0.133 0.867 34 H 0.289 0.711 35 H 0.118 0.882 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 -6.377 9.693 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.291 3.709 3 O -0.484 6.484 4 N -0.335 5.335 5 C -0.067 4.067 6 C -0.023 4.023 7 C 0.263 3.737 8 O -0.394 6.394 9 N -0.301 5.301 10 C 0.103 3.897 11 C -0.271 4.271 12 C 0.103 3.897 13 C -0.522 4.522 14 H 0.101 0.899 15 C -0.181 4.181 16 N -0.455 5.455 17 Si 0.814 3.186 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.311 4.311 22 C -0.047 4.047 23 N -0.295 5.295 24 H 0.140 0.860 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.173 0.827 31 H 0.128 0.872 32 H 0.263 0.737 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.239 -5.667 9.423 16.453 hybrid contribution 2.181 0.212 -0.238 2.204 sum -10.058 -5.455 9.185 14.673 Atomic orbital electron populations 1.22001 0.87612 1.06109 1.06556 1.21827 0.92800 0.82443 0.73822 1.90711 1.72233 1.33350 1.52128 1.47710 1.05469 1.08315 1.71957 1.22173 0.97608 0.83185 1.03738 1.21413 0.81571 1.07546 0.91786 1.22239 0.81881 0.75998 0.93615 1.90722 1.61518 1.45991 1.41133 1.43502 1.07661 1.71138 1.07783 1.18543 0.89104 0.95946 0.86157 1.21809 0.91285 1.13273 1.00763 1.18054 0.94204 0.86346 0.91049 1.19789 0.90575 1.38941 1.02872 0.89895 1.26817 1.06271 0.91644 0.93359 1.69753 1.39223 1.31745 1.04814 0.85072 0.74828 0.79887 0.78815 1.18838 1.19156 1.18113 1.22209 0.94596 1.14025 1.00294 1.22216 0.93346 0.96003 0.93183 1.67299 1.39495 1.23178 0.99518 0.86022 0.89648 0.87170 0.88591 0.88982 0.91737 0.82722 0.87176 0.73748 0.84901 0.90006 0.86353 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.88 71.23 0.70 -1.95 16 2 C 0.50 14.06 7.76 87.66 0.68 14.74 16 3 O -0.60 -23.97 16.74 -3.05 -0.05 -24.02 16 4 N -0.60 -14.43 2.36 -851.14 -2.01 -16.44 16 5 C 0.07 1.05 10.24 127.77 1.31 2.36 16 6 C 0.10 2.64 5.86 85.63 0.50 3.15 16 7 C 0.48 18.29 7.85 87.66 0.69 18.98 16 8 O -0.52 -24.84 14.73 -3.01 -0.04 -24.88 16 9 N -0.65 -26.13 5.39 -308.66 -1.66 -27.79 16 10 C 0.33 16.65 7.40 132.75 0.98 17.63 16 11 C -0.25 -12.95 8.60 22.98 0.20 -12.76 16 12 C 0.11 6.10 5.58 -21.12 -0.12 5.98 16 13 C -0.49 -25.83 9.11 23.52 0.21 -25.62 16 14 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 15 C 0.03 1.64 5.44 85.29 0.46 2.11 16 16 N -0.83 -41.48 10.65 21.84 0.23 -41.25 16 17 Si 0.99 36.87 29.56 68.60 2.03 38.90 16 18 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 21 C -0.29 -14.65 9.90 22.84 0.23 -14.42 16 22 C 0.11 5.34 11.15 84.50 0.94 6.28 16 23 N -0.58 -30.87 7.89 -193.53 -1.53 -32.40 16 24 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.11 1.16 5.62 -2.39 -0.01 1.15 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 1.05 5.73 -2.39 -0.01 1.04 16 29 H 0.06 1.06 8.10 -2.38 -0.02 1.04 16 30 H 0.16 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.11 2.88 7.51 -2.38 -0.02 2.86 16 32 H 0.42 13.52 8.70 -92.71 -0.81 12.71 16 33 H 0.13 6.94 6.21 -2.91 -0.02 6.92 16 34 H 0.29 13.07 8.29 -92.71 -0.77 12.30 16 35 H 0.12 5.47 8.06 -2.91 -0.02 5.45 16 36 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -81.82 314.04 4.07 -77.75 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.32 Total: 33.65 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.79 Total: 16.48 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -4.97 Total: -117.88 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -0.10 Total: -48.90 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -81.82 4.07 -77.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924578.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.402 kcal (2) G-P(sol) polarization free energy of solvation -81.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds