Wall clock time and date at job start Mon Mar 30 2020 01:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50692 * 109.47218 * 239.99676 * 2 1 3 5 5 H 1.08006 * 120.00190 * 275.00309 * 4 2 1 6 6 C 1.37878 * 120.00095 * 95.00539 * 4 2 1 7 7 N 1.31514 * 120.00295 * 184.91679 * 6 4 2 8 8 Si 1.86797 * 119.99958 * 4.91573 * 6 4 2 9 9 H 1.48504 * 109.47141 * 84.83424 * 8 6 4 10 10 H 1.48503 * 109.47386 * 204.83255 * 8 6 4 11 11 H 1.48497 * 109.47261 * 324.83459 * 8 6 4 12 12 N 1.46502 * 109.46892 * 119.99600 * 2 1 3 13 13 C 1.34776 * 120.00418 * 274.99838 * 12 2 1 14 14 O 1.21477 * 119.99703 * 0.02562 * 13 12 2 15 15 C 1.48452 * 120.00027 * 179.97438 * 13 12 2 16 16 C 1.39183 * 120.51362 * 180.02562 * 15 13 12 17 17 C 1.39601 * 118.20636 * 180.02562 * 16 15 13 18 18 O 1.35506 * 120.49677 * 179.97438 * 17 16 15 19 19 N 1.32671 * 119.01243 * 0.28125 * 17 16 15 20 20 C 1.31859 * 120.94412 * 359.43073 * 19 17 16 21 21 C 1.50692 * 119.01146 * 180.29628 * 20 19 17 22 22 C 1.52997 * 117.50049 * 9.02169 * 21 20 19 23 23 C 1.53005 * 117.50099 * 300.36504 * 21 20 19 24 24 N 1.31562 * 121.98347 * 0.58479 * 20 19 17 25 25 H 1.08990 * 109.47314 * 175.03691 * 1 2 3 26 26 H 1.08996 * 109.47107 * 295.04073 * 1 2 3 27 27 H 1.09006 * 109.46782 * 55.03662 * 1 2 3 28 28 H 0.97001 * 120.00383 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99853 * 95.00040 * 12 2 1 30 30 H 1.07998 * 120.90108 * 359.97438 * 16 15 13 31 31 H 0.96702 * 113.99430 * 90.00015 * 18 17 16 32 32 H 1.09001 * 115.55467 * 154.69740 * 21 20 19 33 33 H 1.09004 * 117.49898 * 0.02562 * 22 21 20 34 34 H 1.09003 * 117.49933 * 145.01721 * 22 21 20 35 35 H 1.08994 * 117.50520 * 214.98100 * 23 21 20 36 36 H 1.09007 * 117.49155 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.1354 -1.7856 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3137 1.8790 -2.3174 9 1 3.5994 2.3947 -1.7821 10 1 2.1061 2.3990 -3.6928 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8577 1.1604 2.4118 15 6 2.6413 -0.7181 3.5695 16 6 2.7778 -0.0343 4.7740 17 6 3.2474 -0.7396 5.8835 18 8 3.3985 -0.1196 7.0789 19 7 3.5493 -2.0244 5.7487 20 6 3.4008 -2.6379 4.5910 21 6 3.7507 -4.1001 4.4886 22 6 4.0604 -4.8451 5.7885 23 6 5.1898 -4.5065 4.8125 24 7 2.9616 -2.0106 3.5212 25 1 -0.3633 -1.0237 -0.0889 26 1 -0.3633 0.4350 0.9310 27 1 -0.3633 0.5889 -0.8423 28 1 2.9372 -0.1050 -4.2553 29 1 2.2489 -1.6317 1.1527 30 1 2.5281 1.0137 4.8482 31 1 2.6126 -0.1530 7.6414 32 1 3.2367 -4.6526 3.7020 33 1 4.0106 -4.2778 6.7179 34 1 3.7503 -5.8879 5.8571 35 1 5.6224 -5.3265 4.2393 36 1 5.8835 -3.7161 5.0992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576538281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:50 Heat of formation + Delta-G solvation = -1.568315 kcal Electronic energy + Delta-G solvation = -20866.925957 eV Core-core repulsion = 17545.699264 eV Total energy + Delta-G solvation = -3321.226692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48018 -39.05149 -38.15002 -36.83492 -35.06424 -33.42959 -32.34027 -31.44847 -29.83890 -25.71653 -25.32533 -24.94830 -22.55801 -22.37571 -20.74815 -19.79925 -19.15579 -18.34729 -17.21364 -16.53729 -15.98510 -15.76728 -15.52298 -15.25842 -14.67867 -14.60394 -14.22107 -13.77597 -13.21630 -12.56930 -12.52802 -12.47894 -12.35253 -11.70702 -11.59324 -11.16992 -11.01122 -10.90280 -10.86529 -10.68634 -10.63197 -10.62789 -10.02362 -9.87656 -9.43242 -9.29222 -9.24994 -8.74004 -8.22777 -6.26178 -4.30530 0.44603 0.63121 2.81317 3.03225 3.23726 3.32052 3.38134 3.39550 3.58663 3.66032 3.98043 4.29425 4.43765 4.63556 4.73231 4.80807 4.83597 4.95727 5.13028 5.34338 5.47936 5.49878 5.64244 5.91375 5.97359 6.02244 6.27186 6.45474 6.60305 6.67102 6.83308 7.05274 7.12774 7.27531 7.43354 7.80911 8.06335 8.46819 8.69051 8.78985 9.34529 10.85351 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.004596 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.453227 B = 6090.846657 C = 6935.125530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.227 3.773 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.083 3.917 7 N -0.886 5.886 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.670 5.670 13 C 0.551 3.449 14 O -0.543 6.543 15 C 0.163 3.837 16 C -0.196 4.196 17 C 0.362 3.638 18 O -0.472 6.472 19 N -0.530 5.530 20 C 0.372 3.628 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.153 4.153 24 N -0.492 5.492 25 H 0.049 0.951 26 H 0.029 0.971 27 H 0.055 0.945 28 H 0.269 0.731 29 H 0.406 0.594 30 H 0.165 0.835 31 H 0.408 0.592 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -5.351 18.909 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.126 3.874 3 H 0.070 0.930 4 C -0.569 4.569 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.522 5.522 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.318 5.318 13 C 0.333 3.667 14 O -0.421 6.421 15 C 0.016 3.984 16 C -0.221 4.221 17 C 0.173 3.827 18 O -0.280 6.280 19 N -0.256 5.256 20 C 0.105 3.895 21 C -0.123 4.123 22 C -0.191 4.191 23 C -0.192 4.192 24 N -0.209 5.209 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.242 0.758 30 H 0.183 0.817 31 H 0.267 0.733 32 H 0.154 0.846 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.140 -5.212 18.413 19.171 hybrid contribution -0.444 1.433 0.202 1.514 sum 0.696 -3.779 18.615 19.008 Atomic orbital electron populations 1.22218 0.98108 1.00894 0.99415 1.19292 0.91270 0.94414 0.82464 0.92950 1.20980 1.45441 0.95799 0.94670 0.90049 1.24931 0.93515 0.98634 0.95128 1.69875 1.44371 1.36241 1.01692 0.86914 0.79836 0.85817 0.77495 1.19793 1.21054 1.18418 1.46664 1.61590 1.14716 1.08823 1.17843 0.79743 0.86356 0.82799 1.90750 1.51887 1.14916 1.84509 1.22014 0.92373 0.89404 0.94643 1.22988 1.01808 1.04214 0.93073 1.19281 0.89990 0.86655 0.86761 1.84733 1.42494 1.74083 1.26651 1.67510 1.18765 1.10515 1.28777 1.21875 0.89938 0.95361 0.82318 1.20694 1.01462 0.87672 1.02424 1.23038 1.01690 1.00497 0.93881 1.23013 0.90110 1.03377 1.02675 1.68143 1.12522 1.09090 1.31189 0.93144 0.95179 0.92572 0.92150 0.75822 0.81735 0.73260 0.84607 0.87332 0.88043 0.87618 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.47 37.16 0.35 -2.84 16 2 C 0.23 5.41 2.22 -69.09 -0.15 5.25 16 3 H 0.05 1.34 4.73 -51.93 -0.25 1.10 16 4 C -0.53 -14.23 9.05 -34.44 -0.31 -14.54 16 5 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 8 Si 0.87 21.29 26.99 -169.99 -4.59 16.70 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -6.19 6.82 56.52 0.39 -5.80 16 12 N -0.67 -14.07 5.06 -55.69 -0.28 -14.36 16 13 C 0.55 11.05 7.79 -12.05 -0.09 10.95 16 14 O -0.54 -12.12 16.08 5.39 0.09 -12.04 16 15 C 0.16 2.74 6.79 -82.69 -0.56 2.17 16 16 C -0.20 -2.81 9.68 -38.72 -0.37 -3.19 16 17 C 0.36 4.64 7.84 -16.68 -0.13 4.51 16 18 O -0.47 -4.69 13.58 -18.21 -0.25 -4.94 16 19 N -0.53 -7.12 9.35 -10.79 -0.10 -7.22 16 20 C 0.37 5.19 7.31 -157.34 -1.15 4.04 16 21 C -0.10 -1.12 6.23 -91.77 -0.57 -1.69 16 22 C -0.15 -1.33 10.01 -26.70 -0.27 -1.59 16 23 C -0.15 -1.43 10.24 -26.69 -0.27 -1.70 16 24 N -0.49 -7.82 9.59 -7.38 -0.07 -7.89 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.41 8.00 7.98 -40.82 -0.33 7.67 16 30 H 0.17 2.20 7.73 -52.49 -0.41 1.79 16 31 H 0.41 1.79 9.06 45.56 0.41 2.20 16 32 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.11 1.02 7.54 -51.93 -0.39 0.63 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -32.17 318.11 -6.76 -38.93 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.49 Total: 7.54 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -3.63 Total: 3.58 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.32 Total: -54.57 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.16 Total: -16.98 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.17 -6.76 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576538281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.362 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds