Wall clock time and date at job start Mon Mar 30 2020 01:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50692 * 109.47218 * 239.99676 * 2 1 3 5 5 H 1.08006 * 120.00190 * 275.00309 * 4 2 1 6 6 C 1.37878 * 120.00095 * 95.00539 * 4 2 1 7 7 N 1.31514 * 120.00295 * 184.91679 * 6 4 2 8 8 Si 1.86797 * 119.99958 * 4.91573 * 6 4 2 9 9 H 1.48504 * 109.47141 * 84.83424 * 8 6 4 10 10 H 1.48503 * 109.47386 * 204.83255 * 8 6 4 11 11 H 1.48497 * 109.47261 * 324.83459 * 8 6 4 12 12 N 1.46502 * 109.46892 * 119.99600 * 2 1 3 13 13 C 1.34776 * 120.00418 * 274.99838 * 12 2 1 14 14 O 1.21477 * 119.99703 * 0.02562 * 13 12 2 15 15 C 1.48452 * 120.00027 * 179.97438 * 13 12 2 16 16 C 1.39183 * 120.51362 * 180.02562 * 15 13 12 17 17 C 1.39601 * 118.20636 * 180.02562 * 16 15 13 18 18 O 1.35506 * 120.49677 * 179.97438 * 17 16 15 19 19 N 1.32671 * 119.01243 * 0.28125 * 17 16 15 20 20 C 1.31859 * 120.94412 * 359.43073 * 19 17 16 21 21 C 1.50692 * 119.01146 * 180.29628 * 20 19 17 22 22 C 1.52997 * 117.50049 * 9.02169 * 21 20 19 23 23 C 1.53005 * 117.50099 * 300.36504 * 21 20 19 24 24 N 1.31562 * 121.98347 * 0.58479 * 20 19 17 25 25 H 1.08990 * 109.47314 * 175.03691 * 1 2 3 26 26 H 1.08996 * 109.47107 * 295.04073 * 1 2 3 27 27 H 1.09006 * 109.46782 * 55.03662 * 1 2 3 28 28 H 0.97001 * 120.00383 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99853 * 95.00040 * 12 2 1 30 30 H 1.07998 * 120.90108 * 359.97438 * 16 15 13 31 31 H 0.96702 * 113.99430 * 90.00015 * 18 17 16 32 32 H 1.09001 * 115.55467 * 154.69740 * 21 20 19 33 33 H 1.09004 * 117.49898 * 0.02562 * 22 21 20 34 34 H 1.09003 * 117.49933 * 145.01721 * 22 21 20 35 35 H 1.08994 * 117.50520 * 214.98100 * 23 21 20 36 36 H 1.09007 * 117.49155 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.1354 -1.7856 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3137 1.8790 -2.3174 9 1 3.5994 2.3947 -1.7821 10 1 2.1061 2.3990 -3.6928 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8577 1.1604 2.4118 15 6 2.6413 -0.7181 3.5695 16 6 2.7778 -0.0343 4.7740 17 6 3.2474 -0.7396 5.8835 18 8 3.3985 -0.1196 7.0789 19 7 3.5493 -2.0244 5.7487 20 6 3.4008 -2.6379 4.5910 21 6 3.7507 -4.1001 4.4886 22 6 4.0604 -4.8451 5.7885 23 6 5.1898 -4.5065 4.8125 24 7 2.9616 -2.0106 3.5212 25 1 -0.3633 -1.0237 -0.0889 26 1 -0.3633 0.4350 0.9310 27 1 -0.3633 0.5889 -0.8423 28 1 2.9372 -0.1050 -4.2553 29 1 2.2489 -1.6317 1.1527 30 1 2.5281 1.0137 4.8482 31 1 2.6126 -0.1530 7.6414 32 1 3.2367 -4.6526 3.7020 33 1 4.0106 -4.2778 6.7179 34 1 3.7503 -5.8879 5.8571 35 1 5.6224 -5.3265 4.2393 36 1 5.8835 -3.7161 5.0992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576538281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:50 Heat of formation + Delta-G solvation = -27.264860 kcal Electronic energy + Delta-G solvation = -20868.040242 eV Core-core repulsion = 17545.699264 eV Total energy + Delta-G solvation = -3322.340978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59243 -40.61856 -39.01514 -37.72534 -36.87573 -34.69121 -34.23425 -32.54091 -31.60993 -27.38527 -26.83009 -26.06596 -23.66446 -23.21227 -22.16918 -21.40524 -20.22851 -19.71024 -18.76153 -17.95468 -17.26393 -16.95101 -16.69761 -16.65464 -16.08765 -15.99347 -15.39143 -15.15154 -14.81208 -14.54518 -14.33295 -13.37481 -13.35687 -13.28429 -13.06240 -12.82250 -12.50589 -12.36935 -11.95897 -11.89780 -11.87778 -11.71184 -11.52025 -11.36888 -11.28134 -10.86716 -10.57526 -10.40253 -9.97411 -8.40072 -6.47702 -0.76231 -0.40037 1.29669 1.34425 1.44311 1.54074 1.87698 2.18246 2.26371 2.42019 2.53283 2.97427 3.07122 3.28427 3.59050 3.70707 3.88676 4.06294 4.09932 4.22013 4.39634 4.48528 4.69685 4.76699 4.81488 4.89037 5.01736 5.04255 5.17134 5.29668 5.33427 5.41306 5.53838 5.62223 6.06018 6.40455 6.55329 6.63966 6.80592 7.07583 7.22782 8.74867 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.004596 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.453227 B = 6090.846657 C = 6935.125530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.230 3.770 3 H 0.038 0.962 4 C -0.530 4.530 5 H 0.055 0.945 6 C 0.035 3.965 7 N -0.927 5.927 8 Si 0.927 3.073 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.250 1.250 12 N -0.675 5.675 13 C 0.554 3.446 14 O -0.568 6.568 15 C 0.145 3.855 16 C -0.195 4.195 17 C 0.379 3.621 18 O -0.469 6.469 19 N -0.529 5.529 20 C 0.368 3.632 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.149 4.149 24 N -0.510 5.510 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.272 0.728 29 H 0.411 0.589 30 H 0.172 0.828 31 H 0.434 0.566 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 -5.456 21.157 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.128 3.872 3 H 0.056 0.944 4 C -0.568 4.568 5 H 0.073 0.927 6 C -0.166 4.166 7 N -0.566 5.566 8 Si 0.751 3.249 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.174 1.174 12 N -0.323 5.323 13 C 0.338 3.662 14 O -0.447 6.447 15 C -0.001 4.001 16 C -0.219 4.219 17 C 0.188 3.812 18 O -0.280 6.280 19 N -0.254 5.254 20 C 0.102 3.898 21 C -0.146 4.146 22 C -0.170 4.170 23 C -0.188 4.188 24 N -0.229 5.229 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.190 0.810 31 H 0.299 0.701 32 H 0.159 0.841 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.109 -5.328 20.702 21.405 hybrid contribution -0.401 1.385 -0.330 1.479 sum 0.708 -3.943 20.372 20.762 Atomic orbital electron populations 1.22110 0.96329 1.01556 0.99984 1.19093 0.92558 0.93272 0.82325 0.94441 1.21130 1.44864 0.94812 0.95983 0.92653 1.25617 0.93480 1.02660 0.94829 1.69975 1.46173 1.37918 1.02488 0.86056 0.79870 0.81004 0.77995 1.20027 1.20030 1.17431 1.46410 1.62268 1.14904 1.08695 1.18163 0.78731 0.86049 0.83277 1.90720 1.52842 1.16027 1.85149 1.21494 0.94482 0.90174 0.93975 1.23052 1.01736 1.04532 0.92619 1.19294 0.88255 0.86272 0.87348 1.84696 1.44147 1.73521 1.25680 1.67662 1.18721 1.10671 1.28380 1.22433 0.89038 0.96489 0.81873 1.20881 1.02999 0.86293 1.04422 1.23119 1.00148 1.01331 0.92430 1.23096 0.89235 1.03458 1.02975 1.68099 1.13554 1.08806 1.32398 0.92369 0.94024 0.92619 0.91889 0.75255 0.81007 0.70145 0.84113 0.87927 0.85520 0.85714 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 9.47 71.98 0.68 -5.31 16 2 C 0.23 10.97 2.22 44.24 0.10 11.06 16 3 H 0.04 1.91 4.73 -2.39 -0.01 1.90 16 4 C -0.53 -28.86 9.05 25.60 0.23 -28.63 16 5 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 6 C 0.04 1.97 5.47 84.65 0.46 2.43 16 7 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 8 Si 0.93 43.94 26.99 68.60 1.85 45.79 16 9 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.25 -11.41 6.82 99.48 0.68 -10.73 16 12 N -0.68 -28.51 5.06 -448.41 -2.27 -30.78 16 13 C 0.55 22.16 7.79 86.97 0.68 22.84 16 14 O -0.57 -25.19 16.08 -3.64 -0.06 -25.25 16 15 C 0.14 4.79 6.79 41.88 0.28 5.07 16 16 C -0.19 -5.31 9.68 22.83 0.22 -5.09 16 17 C 0.38 8.88 7.84 84.90 0.67 9.55 16 18 O -0.47 -7.90 13.58 -88.08 -1.20 -9.10 16 19 N -0.53 -13.18 9.35 -300.81 -2.81 -15.99 16 20 C 0.37 9.82 7.31 138.80 1.01 10.83 16 21 C -0.13 -2.55 6.23 -11.54 -0.07 -2.62 16 22 C -0.13 -1.94 10.01 30.62 0.31 -1.64 16 23 C -0.15 -2.47 10.24 30.62 0.31 -2.16 16 24 N -0.51 -15.99 9.59 -177.27 -1.70 -17.69 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.41 16.47 7.98 -92.71 -0.74 15.73 16 30 H 0.17 4.36 7.73 -2.91 -0.02 4.33 16 31 H 0.43 2.28 9.06 -74.06 -0.67 1.61 16 32 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.10 1.66 7.54 -2.38 -0.02 1.65 16 34 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -69.03 318.11 -1.30 -70.33 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.30 Total: 21.19 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 4.88 Total: 16.34 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -6.48 Total: -119.30 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.25 Total: -34.35 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.85 Total: 45.79 kcal Total: -69.03 -1.30 -70.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576538281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.064 kcal (2) G-P(sol) polarization free energy of solvation -69.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds