Wall clock time and date at job start Mon Mar 30 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99415 * 2 1 4 4 O 1.21581 * 120.00241 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99638 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99989 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47056 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00119 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99972 * 179.97438 * 7 6 5 10 10 C 1.39132 * 120.00041 * 184.91622 * 9 7 6 11 11 C 1.38651 * 120.28444 * 331.07307 * 10 9 7 12 12 C 1.38220 * 120.02883 * 180.25308 * 11 10 9 13 13 C 1.38868 * 120.62056 * 359.74636 * 12 11 10 14 14 C 1.36462 * 120.57454 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94589 * 0.02562 * 14 13 12 16 16 C 1.41070 * 120.30424 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00058 * 205.07594 * 16 15 14 18 18 C 1.39961 * 119.99927 * 25.07373 * 16 15 14 19 19 N 1.30846 * 119.99994 * 17.59219 * 18 16 15 20 20 Si 1.86801 * 119.99748 * 197.59584 * 18 16 15 21 21 H 1.48500 * 109.46771 * 265.01259 * 20 18 16 22 22 H 1.48493 * 109.47280 * 25.01529 * 20 18 16 23 23 H 1.48500 * 109.47186 * 145.01739 * 20 18 16 24 24 H 1.09001 * 109.47370 * 60.00144 * 1 2 3 25 25 H 1.09005 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47652 * 299.99938 * 1 2 3 27 27 H 0.96997 * 120.00151 * 179.97438 * 2 1 3 28 28 H 0.97003 * 120.00143 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.47056 * 60.00376 * 6 5 3 30 30 H 1.09002 * 109.47139 * 299.99665 * 6 5 3 31 31 H 0.96996 * 120.00022 * 4.92217 * 9 7 6 32 32 H 1.07994 * 119.98187 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.68696 * 179.76114 * 12 11 10 34 34 H 1.07993 * 119.71212 * 180.02562 * 13 12 11 35 35 H 1.07997 * 120.02993 * 180.02562 * 14 13 12 36 36 H 0.96999 * 120.00141 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4865 1.1673 0.0005 6 6 4.2190 2.4361 0.0011 7 6 5.7006 2.1608 0.0010 8 8 6.1049 1.0173 0.0000 9 7 6.5764 3.1852 0.0009 10 6 7.9409 2.9339 -0.1025 11 6 8.4715 1.7463 0.3777 12 6 9.8286 1.5044 0.2770 13 6 10.6724 2.4397 -0.3076 14 6 10.1761 3.6143 -0.7936 15 6 8.7980 3.8854 -0.7036 16 6 8.2769 5.0975 -1.2029 17 1 7.3561 5.4951 -0.8025 18 6 8.9533 5.7848 -2.2174 19 7 9.8540 5.1671 -2.9380 20 14 8.5701 7.5840 -2.5424 21 1 7.5642 7.6871 -3.6300 22 1 8.0291 8.2059 -1.3073 23 1 9.8123 8.2891 -2.9486 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9500 -0.8400 0.0004 28 1 3.9716 0.3273 0.0005 29 1 3.9553 3.0074 0.8911 30 1 3.9560 3.0078 -0.8889 31 1 6.2554 4.0977 0.0730 32 1 7.8248 1.0120 0.8346 33 1 10.2366 0.5792 0.6563 34 1 11.7304 2.2353 -0.3790 35 1 10.8402 4.3353 -1.2469 36 1 10.3230 5.6435 -3.6408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590541619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:21 Heat of formation + Delta-G solvation = -40.022945 kcal Electronic energy + Delta-G solvation = -20669.613700 eV Core-core repulsion = 17346.719490 eV Total energy + Delta-G solvation = -3322.894210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21912 -39.39015 -37.30354 -34.75289 -34.35129 -33.85917 -33.71737 -29.73997 -29.33921 -27.71643 -25.81862 -25.06158 -21.84098 -20.99072 -20.72239 -19.64996 -18.74052 -17.45779 -17.00784 -16.15425 -15.93446 -15.90738 -15.14187 -14.84800 -14.48356 -14.33766 -14.12421 -13.45851 -13.15901 -12.95659 -12.73552 -12.40677 -12.40555 -12.19740 -11.78821 -11.40719 -11.16657 -11.05840 -10.57660 -10.33982 -10.15375 -9.78539 -9.42536 -9.40039 -9.26552 -8.91657 -8.88125 -7.46363 -7.03093 -6.82206 -4.41964 2.51748 2.59159 2.80174 3.01785 3.04849 3.15842 3.17826 3.32706 3.80856 3.84232 4.28370 4.56978 4.99149 5.11081 5.35338 5.45390 5.50979 5.60601 5.61009 6.30006 6.30346 6.36259 6.47728 6.56323 6.79152 6.85717 7.00305 7.10937 7.22746 7.55979 7.65037 7.88332 7.94716 8.02406 8.06492 8.31489 8.49520 8.54184 8.70958 8.74684 8.92524 10.08030 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.004329 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.737713 B = 6466.534146 C = 7752.790857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.752 5.752 3 C 0.705 3.295 4 O -0.594 6.594 5 N -0.730 5.730 6 C 0.121 3.879 7 C 0.492 3.508 8 O -0.541 6.541 9 N -0.626 5.626 10 C 0.007 3.993 11 C -0.090 4.090 12 C -0.231 4.231 13 C -0.109 4.109 14 C -0.156 4.156 15 C 0.106 3.894 16 C -0.466 4.466 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.788 5.788 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.260 1.260 23 H -0.275 1.275 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.399 0.601 28 H 0.408 0.592 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.405 0.595 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.652 -5.199 3.706 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.408 5.408 3 C 0.404 3.596 4 O -0.473 6.473 5 N -0.389 5.389 6 C -0.007 4.007 7 C 0.279 3.721 8 O -0.421 6.421 9 N -0.268 5.268 10 C -0.087 4.087 11 C -0.110 4.110 12 C -0.251 4.251 13 C -0.128 4.128 14 C -0.176 4.176 15 C 0.102 3.898 16 C -0.496 4.496 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.413 5.413 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.183 1.183 23 H -0.200 1.200 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.232 0.768 28 H 0.245 0.755 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.240 0.760 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.806 -4.965 3.481 12.391 hybrid contribution 0.238 0.478 -0.380 0.656 sum -10.568 -4.487 3.101 11.893 Atomic orbital electron populations 1.21373 0.78181 1.01831 1.02243 1.44873 1.07691 1.07219 1.81002 1.15847 0.81500 0.84320 0.77903 1.90925 1.68006 1.30251 1.58089 1.44730 1.04472 1.09959 1.79728 1.20873 0.88852 0.86397 1.04599 1.20352 0.87908 0.85821 0.78048 1.90595 1.79141 1.21456 1.50858 1.42715 1.05634 1.09157 1.69258 1.17682 0.80964 0.97864 1.12168 1.20850 0.94726 0.96265 0.99163 1.20318 0.93566 1.00313 1.10905 1.20483 0.97505 0.95250 0.99590 1.20877 0.94853 0.97659 1.04199 1.17381 0.91319 0.91740 0.89325 1.19270 1.08258 1.04933 1.17092 0.90658 1.25852 0.93684 1.00004 0.94440 1.69829 1.19681 1.37259 1.14503 0.86322 0.78952 0.82027 0.79623 1.19549 1.18330 1.19971 0.92410 0.90757 0.92429 0.76792 0.75472 0.88803 0.88495 0.75952 0.86343 0.89239 0.89408 0.86183 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 10.70 59.85 0.64 1.52 16 2 N -0.75 -7.49 5.72 -72.07 -0.41 -7.91 16 3 C 0.70 9.87 8.57 -86.92 -0.74 9.12 16 4 O -0.59 -10.45 16.34 5.29 0.09 -10.37 16 5 N -0.73 -9.91 5.53 -66.41 -0.37 -10.28 16 6 C 0.12 1.74 6.16 -5.19 -0.03 1.71 16 7 C 0.49 8.81 7.77 -10.99 -0.09 8.73 16 8 O -0.54 -11.02 12.73 5.56 0.07 -10.95 16 9 N -0.63 -12.17 5.10 -9.47 -0.05 -12.22 16 10 C 0.01 0.16 6.44 -83.17 -0.54 -0.38 16 11 C -0.09 -2.11 8.75 -39.44 -0.35 -2.46 16 12 C -0.23 -5.30 10.04 -39.35 -0.39 -5.69 16 13 C -0.11 -2.56 9.97 -39.99 -0.40 -2.96 16 14 C -0.16 -3.94 8.64 -39.28 -0.34 -4.28 16 15 C 0.11 2.68 5.58 -106.65 -0.60 2.08 16 16 C -0.47 -11.36 8.65 -37.86 -0.33 -11.68 16 17 H 0.08 1.68 6.69 -52.49 -0.35 1.33 16 18 C 0.08 1.87 5.14 -17.33 -0.09 1.78 16 19 N -0.79 -19.58 10.98 55.55 0.61 -18.97 16 20 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.40 2.88 8.84 -40.82 -0.36 2.52 16 28 H 0.41 5.22 7.45 -40.82 -0.30 4.92 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.41 6.92 7.34 -40.82 -0.30 6.62 16 32 H 0.12 2.72 5.74 -52.49 -0.30 2.42 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.12 3.10 6.19 -52.49 -0.32 2.77 16 36 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -31.21 311.09 -7.69 -38.89 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -4.04 Total: 16.98 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.25 Total: -2.50 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.22 Total: -49.37 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.16 Total: -21.31 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.21 -7.69 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590541619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.130 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds