Wall clock time and date at job start Mon Mar 30 2020 02:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99415 * 2 1 4 4 O 1.21581 * 120.00241 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99638 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99989 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47056 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00119 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99972 * 179.97438 * 7 6 5 10 10 C 1.39132 * 120.00041 * 184.91622 * 9 7 6 11 11 C 1.38651 * 120.28444 * 331.07307 * 10 9 7 12 12 C 1.38220 * 120.02883 * 180.25308 * 11 10 9 13 13 C 1.38868 * 120.62056 * 359.74636 * 12 11 10 14 14 C 1.36462 * 120.57454 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94589 * 0.02562 * 14 13 12 16 16 C 1.41070 * 120.30424 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00058 * 205.07594 * 16 15 14 18 18 C 1.39961 * 119.99927 * 25.07373 * 16 15 14 19 19 N 1.30846 * 119.99994 * 17.59219 * 18 16 15 20 20 Si 1.86801 * 119.99748 * 197.59584 * 18 16 15 21 21 H 1.48500 * 109.46771 * 265.01259 * 20 18 16 22 22 H 1.48493 * 109.47280 * 25.01529 * 20 18 16 23 23 H 1.48500 * 109.47186 * 145.01739 * 20 18 16 24 24 H 1.09001 * 109.47370 * 60.00144 * 1 2 3 25 25 H 1.09005 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47652 * 299.99938 * 1 2 3 27 27 H 0.96997 * 120.00151 * 179.97438 * 2 1 3 28 28 H 0.97003 * 120.00143 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.47056 * 60.00376 * 6 5 3 30 30 H 1.09002 * 109.47139 * 299.99665 * 6 5 3 31 31 H 0.96996 * 120.00022 * 4.92217 * 9 7 6 32 32 H 1.07994 * 119.98187 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.68696 * 179.76114 * 12 11 10 34 34 H 1.07993 * 119.71212 * 180.02562 * 13 12 11 35 35 H 1.07997 * 120.02993 * 180.02562 * 14 13 12 36 36 H 0.96999 * 120.00141 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4865 1.1673 0.0005 6 6 4.2190 2.4361 0.0011 7 6 5.7006 2.1608 0.0010 8 8 6.1049 1.0173 0.0000 9 7 6.5764 3.1852 0.0009 10 6 7.9409 2.9339 -0.1025 11 6 8.4715 1.7463 0.3777 12 6 9.8286 1.5044 0.2770 13 6 10.6724 2.4397 -0.3076 14 6 10.1761 3.6143 -0.7936 15 6 8.7980 3.8854 -0.7036 16 6 8.2769 5.0975 -1.2029 17 1 7.3561 5.4951 -0.8025 18 6 8.9533 5.7848 -2.2174 19 7 9.8540 5.1671 -2.9380 20 14 8.5701 7.5840 -2.5424 21 1 7.5642 7.6871 -3.6300 22 1 8.0291 8.2059 -1.3073 23 1 9.8123 8.2891 -2.9486 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9500 -0.8400 0.0004 28 1 3.9716 0.3273 0.0005 29 1 3.9553 3.0074 0.8911 30 1 3.9560 3.0078 -0.8889 31 1 6.2554 4.0977 0.0730 32 1 7.8248 1.0120 0.8346 33 1 10.2366 0.5792 0.6563 34 1 11.7304 2.2353 -0.3790 35 1 10.8402 4.3353 -1.2469 36 1 10.3230 5.6435 -3.6408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590541619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:20 Heat of formation + Delta-G solvation = -62.811713 kcal Electronic energy + Delta-G solvation = -20670.601896 eV Core-core repulsion = 17346.719490 eV Total energy + Delta-G solvation = -3323.882405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54411 -40.72281 -39.00573 -35.79371 -35.58581 -35.50708 -35.34909 -31.54206 -30.88705 -29.02347 -27.19172 -26.45378 -23.51229 -22.59040 -21.91421 -21.19947 -19.89102 -19.21032 -18.50151 -17.52781 -17.32239 -17.08379 -16.75608 -16.14513 -15.98660 -15.62425 -15.27440 -14.92880 -14.52692 -14.45798 -14.17602 -14.02248 -13.63980 -13.42721 -13.12528 -13.00398 -12.79652 -12.75274 -12.18352 -11.90466 -11.54680 -11.50824 -11.08421 -11.03256 -10.53876 -10.47818 -9.85436 -9.32973 -8.81260 -8.59562 -6.27087 0.82250 1.06225 1.43043 1.52325 1.53250 1.58181 1.74578 2.08974 2.21572 2.43379 2.77920 3.34238 3.66203 3.76361 4.33159 4.35672 4.49314 4.54729 4.65119 4.69552 4.78816 4.97869 5.05821 5.22447 5.26432 5.32008 5.44626 5.48984 5.76324 5.85109 5.92710 6.12033 6.20397 6.24440 6.61406 6.70686 6.93162 6.99537 7.01871 7.29330 7.50744 8.33510 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.004329 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.737713 B = 6466.534146 C = 7752.790857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.739 5.739 3 C 0.700 3.300 4 O -0.633 6.633 5 N -0.728 5.728 6 C 0.132 3.868 7 C 0.498 3.502 8 O -0.564 6.564 9 N -0.628 5.628 10 C 0.005 3.995 11 C -0.104 4.104 12 C -0.235 4.235 13 C -0.116 4.116 14 C -0.181 4.181 15 C 0.077 3.923 16 C -0.488 4.488 17 H 0.089 0.911 18 C 0.038 3.962 19 N -0.824 5.824 20 Si 0.980 3.020 21 H -0.266 1.266 22 H -0.252 1.252 23 H -0.272 1.272 24 H 0.048 0.952 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.414 0.586 28 H 0.412 0.588 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.415 0.585 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -5.370 3.959 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.394 5.394 3 C 0.400 3.600 4 O -0.515 6.515 5 N -0.387 5.387 6 C 0.004 3.996 7 C 0.286 3.714 8 O -0.445 6.445 9 N -0.270 5.270 10 C -0.089 4.089 11 C -0.124 4.124 12 C -0.255 4.255 13 C -0.134 4.134 14 C -0.201 4.201 15 C 0.074 3.926 16 C -0.518 4.518 17 H 0.107 0.893 18 C -0.178 4.178 19 N -0.449 5.449 20 Si 0.801 3.199 21 H -0.191 1.191 22 H -0.176 1.176 23 H -0.197 1.197 24 H 0.066 0.934 25 H 0.132 0.868 26 H 0.068 0.932 27 H 0.250 0.750 28 H 0.251 0.749 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.252 0.748 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.199 -5.186 3.746 13.775 hybrid contribution 0.636 0.399 -0.438 0.869 sum -11.563 -4.787 3.308 12.945 Atomic orbital electron populations 1.21573 0.76834 1.04203 1.01409 1.44861 1.08511 1.06673 1.79401 1.16040 0.81367 0.84863 0.77754 1.90898 1.68653 1.31924 1.59982 1.44674 1.04505 1.09777 1.79742 1.20774 0.85978 0.87103 1.05735 1.20878 0.89071 0.84987 0.76491 1.90575 1.79907 1.22401 1.51583 1.42702 1.04452 1.10252 1.69616 1.17824 0.82666 0.97426 1.11031 1.21053 0.95213 0.96526 0.99608 1.20638 0.93501 1.01042 1.10270 1.20720 0.98821 0.94739 0.99168 1.20919 0.95157 0.98434 1.05617 1.17721 0.91772 0.92839 0.90299 1.19612 1.09234 1.05287 1.17630 0.89260 1.26719 0.93217 1.04034 0.93825 1.69897 1.20751 1.39078 1.15196 0.85219 0.78698 0.76430 0.79586 1.19137 1.17552 1.19705 0.93368 0.86809 0.93164 0.75026 0.74949 0.87030 0.87870 0.74759 0.85920 0.86840 0.87268 0.87609 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.45 10.70 127.77 1.37 2.82 16 2 N -0.74 -13.15 5.72 -500.19 -2.86 -16.01 16 3 C 0.70 18.53 8.57 179.05 1.53 20.06 16 4 O -0.63 -21.60 16.34 -3.97 -0.06 -21.66 16 5 N -0.73 -18.59 5.53 -482.30 -2.67 -21.26 16 6 C 0.13 3.60 6.16 85.63 0.53 4.13 16 7 C 0.50 17.30 7.77 87.66 0.68 17.98 16 8 O -0.56 -22.46 12.73 -3.03 -0.04 -22.50 16 9 N -0.63 -24.02 5.10 -302.27 -1.54 -25.56 16 10 C 0.00 0.23 6.44 38.88 0.25 0.48 16 11 C -0.10 -4.84 8.75 22.36 0.20 -4.64 16 12 C -0.23 -10.61 10.04 22.42 0.22 -10.39 16 13 C -0.12 -5.42 9.97 22.01 0.22 -5.20 16 14 C -0.18 -9.34 8.64 22.46 0.19 -9.14 16 15 C 0.08 3.96 5.58 -21.18 -0.12 3.84 16 16 C -0.49 -23.89 8.65 23.38 0.20 -23.69 16 17 H 0.09 3.94 6.69 -2.91 -0.02 3.92 16 18 C 0.04 1.78 5.14 85.26 0.44 2.22 16 19 N -0.82 -41.54 10.98 21.83 0.24 -41.30 16 20 Si 0.98 35.85 29.60 68.60 2.03 37.88 16 21 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 23 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.41 4.92 8.84 -92.71 -0.82 4.10 16 28 H 0.41 9.89 7.45 -92.71 -0.69 9.20 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.42 13.87 7.34 -92.71 -0.68 13.19 16 32 H 0.12 5.56 5.74 -2.91 -0.02 5.54 16 33 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.11 5.66 6.19 -2.91 -0.02 5.64 16 36 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 Total: -1.00 -67.17 311.09 -0.22 -67.39 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -1.04 Total: 44.56 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.72 Total: -1.53 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -6.83 Total: -104.14 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.10 Total: -44.16 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -67.17 -0.22 -67.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590541619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.583 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds