Wall clock time and date at job start Mon Mar 30 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 119.99992 * 2 1 4 4 N 1.46501 * 109.47282 * 124.99819 * 3 2 1 5 5 C 1.46504 * 120.00116 * 270.00284 * 4 3 2 6 6 C 1.50698 * 109.47264 * 269.99602 * 5 4 3 7 7 H 1.08001 * 120.00061 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00150 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99859 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99930 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47117 * 60.00459 * 10 8 6 12 12 H 1.48504 * 109.46878 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47117 * 300.00145 * 10 8 6 14 14 C 1.38470 * 119.99964 * 89.99990 * 4 3 2 15 15 C 1.39613 * 120.04691 * 184.99923 * 14 4 3 16 16 C 1.38272 * 118.03572 * 179.97438 * 15 14 4 17 17 C 1.40125 * 117.99104 * 359.97438 * 16 15 14 18 18 C 1.47739 * 120.09379 * 179.97438 * 17 16 15 19 19 O 1.21473 * 120.00438 * 0.02562 * 18 17 16 20 20 O 1.34718 * 119.99639 * 179.72551 * 18 17 16 21 21 C 1.45196 * 117.00175 * 180.27328 * 20 18 17 22 22 N 1.32792 * 119.80274 * 0.25797 * 17 16 15 23 23 N 1.28358 * 122.09567 * 359.46384 * 22 17 16 24 24 H 1.08007 * 119.99870 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00737 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00346 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47035 * 5.00446 * 3 2 1 28 28 H 1.09001 * 109.47403 * 244.99885 * 3 2 1 29 29 H 1.09001 * 109.46950 * 29.99929 * 5 4 3 30 30 H 1.09004 * 109.46872 * 149.99412 * 5 4 3 31 31 H 0.96997 * 120.00005 * 180.02562 * 9 8 6 32 32 H 1.07996 * 120.97957 * 0.02562 * 15 14 4 33 33 H 1.07994 * 121.00538 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.47216 * 179.97438 * 21 20 18 35 35 H 1.08998 * 109.47461 * 300.00610 * 21 20 18 36 36 H 1.09004 * 109.46605 * 60.00810 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5587 1.8650 2.4249 6 6 2.8441 3.3436 2.4805 7 1 3.3032 3.8371 1.6366 8 6 2.5182 4.0667 3.6083 9 7 1.9588 3.4659 4.6358 10 14 2.8714 5.8997 3.6770 11 1 2.1355 6.5868 2.5854 12 1 2.4306 6.4400 4.9881 13 1 4.3292 6.1295 3.5123 14 6 4.2840 0.8535 0.9784 15 6 5.1382 0.7815 2.0803 16 6 6.4176 0.2967 1.8803 17 6 6.7779 -0.0932 0.5835 18 6 8.1333 -0.6173 0.3172 19 8 8.9371 -0.7112 1.2230 20 8 8.4758 -0.9968 -0.9293 21 6 9.8219 -1.5077 -1.1163 22 7 5.8993 0.0151 -0.4063 23 7 4.7105 0.4608 -0.2173 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9352 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3584 2.1316 0.0897 28 1 2.6212 1.4026 -0.9314 29 1 1.4886 1.6966 2.5459 30 1 3.0988 1.3602 3.2260 31 1 1.7292 3.9746 5.4291 32 1 4.8092 1.0945 3.0601 33 1 7.1178 0.2200 2.6989 34 1 9.9664 -1.7766 -2.1627 35 1 10.5439 -0.7413 -0.8347 36 1 9.9658 -2.3895 -0.4919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596237447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:40 Heat of formation + Delta-G solvation = -9.706052 kcal Electronic energy + Delta-G solvation = -20822.924815 eV Core-core repulsion = 17501.345244 eV Total energy + Delta-G solvation = -3321.579571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.20275 -41.09315 -38.61966 -37.56173 -35.26536 -34.58906 -34.03567 -32.32156 -29.74430 -28.71464 -27.11725 -26.27748 -24.89446 -23.53659 -22.28136 -20.88625 -19.59350 -18.74401 -18.54397 -18.02803 -17.79359 -17.50432 -16.71825 -16.21434 -16.07764 -15.49171 -15.22707 -14.98677 -14.65504 -14.34010 -14.20736 -14.13381 -13.35714 -13.19955 -13.05424 -12.83735 -12.66491 -12.53225 -12.46341 -12.20759 -11.87433 -11.79563 -11.73329 -11.40046 -11.30128 -10.76032 -10.65464 -10.28885 -8.88922 -8.21902 -6.41143 -0.46041 -0.13372 1.23329 1.32290 1.40744 1.42688 1.49835 1.55750 2.08613 2.38231 2.64724 3.04906 3.13049 3.47067 3.65874 3.83882 3.98077 4.05466 4.17190 4.32388 4.38226 4.45283 4.58907 4.71546 4.80306 4.84387 4.95612 5.01520 5.04536 5.17231 5.20095 5.59049 5.68943 5.76823 5.95963 6.08687 6.31526 6.56493 6.70367 7.30042 7.65786 8.79268 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.004975 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.261408 B = 5626.792922 C = 6914.466336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.145 3.855 4 N -0.559 5.559 5 C 0.261 3.739 6 C -0.552 4.552 7 H 0.052 0.948 8 C 0.027 3.973 9 N -0.916 5.916 10 Si 0.955 3.045 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.364 3.636 15 C -0.184 4.184 16 C -0.018 4.018 17 C -0.062 4.062 18 C 0.547 3.453 19 O -0.523 6.523 20 O -0.348 6.348 21 C 0.026 3.974 22 N -0.151 5.151 23 N -0.328 5.328 24 H 0.117 0.883 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.270 0.730 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -7.767 -7.905 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.263 5.263 5 C 0.140 3.860 6 C -0.590 4.590 7 H 0.070 0.930 8 C -0.174 4.174 9 N -0.555 5.555 10 Si 0.781 3.219 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.200 1.200 14 C 0.122 3.878 15 C -0.217 4.217 16 C -0.045 4.045 17 C -0.211 4.211 18 C 0.390 3.610 19 O -0.411 6.411 20 O -0.263 6.263 21 C -0.066 4.066 22 N -0.001 5.001 23 N -0.186 5.186 24 H 0.135 0.865 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.177 0.823 33 H 0.194 0.806 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.883 -7.876 -8.976 13.312 hybrid contribution 0.492 1.157 1.876 2.259 sum 6.375 -6.719 -7.099 11.670 Atomic orbital electron populations 1.24034 0.95127 1.03041 0.98232 1.23172 0.96646 0.97937 1.01954 1.20681 0.91843 0.96111 0.89061 1.47126 1.06912 1.58530 1.13767 1.19202 0.95539 0.92746 0.78510 1.21622 1.41771 0.94285 1.01349 0.92976 1.25586 0.94338 1.02587 0.94898 1.69983 1.41772 1.38032 1.05710 0.85645 0.78646 0.80103 0.77537 1.19629 1.20506 1.20009 1.20440 0.87665 0.88061 0.91612 1.22032 0.94158 1.04714 1.00805 1.22164 0.95546 0.90091 0.96697 1.21263 0.94885 1.11621 0.93376 1.20179 0.85796 0.73801 0.81223 1.90815 1.51476 1.52905 1.45925 1.86664 1.36261 1.73768 1.29558 1.23683 0.78366 0.99366 1.05222 1.72952 0.95976 1.03247 1.27887 1.73182 1.08136 1.18809 1.18497 0.86508 0.87828 0.88131 0.89856 0.89187 0.95047 0.94978 0.92112 0.82270 0.80557 0.84814 0.91438 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 14.32 67.79 0.97 -3.25 16 2 C -0.18 -5.34 9.85 25.65 0.25 -5.09 16 3 C 0.15 4.99 5.91 85.63 0.51 5.50 16 4 N -0.56 -22.25 2.54 -712.19 -1.81 -24.06 16 5 C 0.26 11.89 5.01 85.63 0.43 12.32 16 6 C -0.55 -27.78 9.39 25.60 0.24 -27.54 16 7 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 8 C 0.03 1.38 5.46 84.65 0.46 1.84 16 9 N -0.92 -48.83 13.29 21.45 0.28 -48.54 16 10 Si 0.96 40.88 29.54 68.60 2.03 42.91 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.36 14.24 7.44 133.22 0.99 15.23 16 15 C -0.18 -6.70 9.33 22.61 0.21 -6.49 16 16 C -0.02 -0.58 9.71 22.74 0.22 -0.36 16 17 C -0.06 -2.10 6.83 41.97 0.29 -1.81 16 18 C 0.55 17.06 7.94 70.33 0.56 17.62 16 19 O -0.52 -17.02 16.17 19.92 0.32 -16.70 16 20 O -0.35 -9.54 10.39 -56.28 -0.58 -10.12 16 21 C 0.03 0.46 10.56 113.37 1.20 1.66 16 22 N -0.15 -5.62 11.30 -48.54 -0.55 -6.17 16 23 N -0.33 -12.68 10.25 -55.17 -0.57 -13.25 16 24 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 25 H 0.10 2.52 7.84 -2.91 -0.02 2.50 16 26 H 0.10 3.09 8.06 -2.91 -0.02 3.06 16 27 H 0.08 2.86 7.72 -2.38 -0.02 2.85 16 28 H 0.09 3.06 7.31 -2.39 -0.02 3.04 16 29 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 30 H 0.03 1.52 6.01 -2.39 -0.01 1.51 16 31 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.16 5.93 6.11 -2.91 -0.02 5.91 16 33 H 0.18 4.78 7.71 -2.91 -0.02 4.76 16 34 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -58.74 323.98 6.54 -52.19 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.09 Total: 14.12 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.33 Total: 9.63 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -2.64 Total: -92.02 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.26 Total: -26.82 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -58.74 6.54 -52.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596237447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.487 kcal (2) G-P(sol) polarization free energy of solvation -58.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds