Wall clock time and date at job start Mon Mar 30 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47046 * 2 1 4 4 C 1.34777 * 119.99937 * 90.00160 * 3 2 1 5 5 C 1.50695 * 120.00247 * 359.97438 * 4 3 2 6 6 O 1.21283 * 119.99589 * 180.02562 * 4 3 2 7 7 C 1.39399 * 120.00091 * 269.99913 * 3 2 1 8 8 C 1.39178 * 119.59812 * 4.99682 * 7 3 2 9 9 C 1.38173 * 119.19500 * 179.97438 * 8 7 3 10 10 C 1.39608 * 118.42494 * 0.02562 * 9 8 7 11 11 N 1.39528 * 120.42716 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00352 * 325.01282 * 11 10 9 13 13 O 1.21772 * 119.99568 * 4.66699 * 12 11 10 14 14 C 1.41776 * 119.99960 * 184.67103 * 12 11 10 15 15 H 1.08001 * 120.00453 * 0.02562 * 14 12 11 16 16 C 1.40135 * 120.00080 * 179.97438 * 14 12 11 17 17 N 1.30634 * 119.99876 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00339 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46949 * 59.99845 * 18 16 14 20 20 H 1.48494 * 109.47417 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46780 * 300.00223 * 18 16 14 22 22 C 1.38983 * 119.14201 * 359.97438 * 10 9 8 23 23 N 1.31836 * 120.71730 * 359.74429 * 22 10 9 24 24 H 1.09001 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47084 * 299.99737 * 1 2 3 26 26 H 1.09000 * 109.47152 * 60.00078 * 1 2 3 27 27 H 1.08992 * 109.47352 * 239.99774 * 2 1 3 28 28 H 1.09003 * 109.46908 * 119.99468 * 2 1 3 29 29 H 1.09000 * 109.47229 * 90.00197 * 5 4 3 30 30 H 1.09000 * 109.47270 * 210.00327 * 5 4 3 31 31 H 1.09005 * 109.47350 * 330.00119 * 5 4 3 32 32 H 1.08002 * 120.40058 * 359.96303 * 8 7 3 33 33 H 1.07999 * 120.78676 * 180.02562 * 9 8 7 34 34 H 0.97004 * 119.99534 * 145.01928 * 11 10 9 35 35 H 0.96996 * 120.00035 * 180.02562 * 17 16 14 36 36 H 1.07997 * 119.64042 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 6 1.9913 1.3064 2.4723 6 8 2.6468 3.1602 1.1671 7 6 2.2507 2.0384 -1.2072 8 6 1.9179 1.4133 -2.4053 9 6 2.1513 2.0725 -3.5971 10 6 2.7162 3.3483 -3.5512 11 7 2.9702 4.0514 -4.7293 12 6 3.3582 3.3907 -5.8382 13 8 3.4050 2.1739 -5.8367 14 6 3.7117 4.1125 -7.0061 15 1 3.6706 5.1917 -7.0072 16 6 4.1156 3.4256 -8.1589 17 7 4.1658 2.1202 -8.1575 18 14 4.5821 4.3765 -9.6976 19 1 5.7253 5.2752 -9.3964 20 1 4.9692 3.4246 -10.7695 21 1 3.4221 5.1858 -10.1500 22 6 3.0223 3.9090 -2.3168 23 7 2.7801 3.2517 -1.2000 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.8994 0.7923 2.7872 30 1 1.7033 2.0332 3.2318 31 1 1.1891 0.5800 2.3419 32 1 1.4826 0.4248 -2.4036 33 1 1.9026 1.6116 -4.5416 34 1 2.8677 5.0158 -4.7502 35 1 4.4457 1.6448 -8.9552 36 1 3.4599 4.8953 -2.2720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597944904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:00 Heat of formation + Delta-G solvation = -42.431567 kcal Electronic energy + Delta-G solvation = -21031.381995 eV Core-core repulsion = 17708.383339 eV Total energy + Delta-G solvation = -3322.998656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97621 -40.57541 -39.16634 -37.22981 -35.49109 -34.50151 -33.08528 -32.03046 -31.04894 -29.72356 -28.08858 -25.27349 -24.54139 -23.47871 -22.07023 -20.69217 -19.58612 -18.62006 -18.06475 -17.79516 -17.50133 -16.71141 -16.36757 -16.00824 -15.79867 -15.24278 -14.94343 -14.67341 -14.59348 -14.41596 -13.98671 -13.73672 -13.73038 -13.27413 -13.12069 -12.95793 -12.78397 -12.70661 -12.56869 -12.07342 -12.03104 -11.74604 -11.23086 -10.96877 -10.78910 -10.29555 -10.17637 -9.70458 -8.53261 -8.38890 -7.02505 0.13133 0.40908 1.40354 1.41842 1.55046 1.69055 1.74715 2.20826 2.36643 2.87551 2.97580 3.42612 3.60523 3.79416 3.95420 4.06713 4.08319 4.16089 4.28612 4.46650 4.53309 4.65084 4.66990 4.76657 4.88928 4.99770 5.10803 5.19940 5.26308 5.31422 5.39651 5.74395 5.86522 6.11250 6.17175 6.32959 6.72935 7.01722 7.29149 7.35752 8.35696 8.54367 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.041229 B = 0.003714 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.970915 B = 7537.023148 C = 8013.807316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 N -0.547 5.547 4 C 0.488 3.512 5 C -0.160 4.160 6 O -0.544 6.544 7 C 0.304 3.696 8 C -0.171 4.171 9 C -0.081 4.081 10 C 0.094 3.906 11 N -0.688 5.688 12 C 0.531 3.469 13 O -0.613 6.613 14 C -0.565 4.565 15 H 0.091 0.909 16 C 0.034 3.966 17 N -0.799 5.799 18 Si 1.001 2.999 19 H -0.255 1.255 20 H -0.272 1.272 21 H -0.253 1.253 22 C 0.074 3.926 23 N -0.483 5.483 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.408 0.592 35 H 0.280 0.720 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -4.924 15.047 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.032 4.032 3 N -0.275 5.275 4 C 0.278 3.722 5 C -0.219 4.219 6 O -0.418 6.418 7 C 0.073 3.927 8 C -0.194 4.194 9 C -0.110 4.110 10 C -0.007 4.007 11 N -0.333 5.333 12 C 0.340 3.660 13 O -0.500 6.500 14 C -0.600 4.600 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.427 5.427 18 Si 0.820 3.180 19 H -0.179 1.179 20 H -0.197 1.197 21 H -0.177 1.177 22 C -0.087 4.087 23 N -0.197 5.197 24 H 0.119 0.881 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.180 0.820 33 H 0.145 0.855 34 H 0.243 0.757 35 H 0.090 0.910 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.420 -4.959 15.794 17.755 hybrid contribution 0.090 0.511 -1.821 1.894 sum -6.330 -4.449 13.972 15.971 Atomic orbital electron populations 1.22241 0.93943 1.04312 1.02384 1.22209 0.96038 0.78653 1.06299 1.46017 1.63122 1.15654 1.02699 1.22166 0.76441 0.86803 0.86763 1.22043 1.06196 1.02648 0.91034 1.90787 1.43716 1.19803 1.87501 1.18685 0.97289 0.90022 0.86705 1.21625 1.05373 1.02529 0.89854 1.21630 0.95752 0.94787 0.98865 1.19127 0.98209 0.95011 0.88378 1.43591 1.70407 1.10553 1.08766 1.17416 0.78049 0.87459 0.83060 1.90578 1.60088 1.15414 1.83932 1.20556 1.47195 0.95665 0.96549 0.89089 1.26994 0.92214 0.95612 1.03682 1.70141 1.32549 1.10017 1.29991 0.85015 0.79838 0.78229 0.74954 1.17926 1.19664 1.17674 1.22622 0.99613 1.01161 0.85264 1.67517 1.14263 1.07883 1.30041 0.88058 0.91500 0.93940 0.89181 0.85407 0.86670 0.88420 0.86727 0.81962 0.85484 0.75681 0.91016 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.03 71.98 0.72 -1.39 16 2 C 0.09 1.33 5.05 86.38 0.44 1.77 16 3 N -0.55 -14.63 2.68 -637.19 -1.71 -16.34 16 4 C 0.49 13.40 7.75 87.66 0.68 14.07 16 5 C -0.16 -2.12 9.29 71.23 0.66 -1.46 16 6 O -0.54 -21.13 15.35 -3.04 -0.05 -21.17 16 7 C 0.30 10.95 7.32 132.94 0.97 11.92 16 8 C -0.17 -6.02 9.11 22.48 0.20 -5.82 16 9 C -0.08 -3.57 8.79 22.59 0.20 -3.37 16 10 C 0.09 4.15 6.32 38.43 0.24 4.39 16 11 N -0.69 -31.89 5.32 -311.02 -1.65 -33.55 16 12 C 0.53 30.07 7.43 85.12 0.63 30.70 16 13 O -0.61 -39.13 12.34 -4.58 -0.06 -39.19 16 14 C -0.56 -30.84 9.31 23.61 0.22 -30.62 16 15 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 16 C 0.03 1.79 5.50 85.33 0.47 2.26 16 17 N -0.80 -46.62 11.73 21.85 0.26 -46.36 16 18 Si 1.00 39.03 29.56 68.60 2.03 41.06 16 19 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 21 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 22 C 0.07 3.00 11.12 84.87 0.94 3.95 16 23 N -0.48 -20.04 7.87 -192.26 -1.51 -21.55 16 24 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.75 7.33 -2.39 -0.02 0.73 16 26 H 0.04 0.74 8.02 -2.39 -0.02 0.72 16 27 H 0.09 1.39 6.38 -2.39 -0.02 1.37 16 28 H 0.13 0.96 6.53 -2.39 -0.02 0.94 16 29 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 0.76 5.68 -2.38 -0.01 0.75 16 32 H 0.16 4.44 6.19 -2.91 -0.02 4.42 16 33 H 0.13 6.31 6.31 -2.91 -0.02 6.29 16 34 H 0.41 15.98 8.78 -92.71 -0.81 15.17 16 35 H 0.28 14.71 8.29 -92.71 -0.77 13.94 16 36 H 0.17 5.97 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -83.85 307.05 4.00 -79.85 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.32 Total: 30.84 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 6.38 Total: 26.41 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -4.62 Total: -117.80 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -0.10 Total: -60.36 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -83.85 4.00 -79.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597944904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.414 kcal (2) G-P(sol) polarization free energy of solvation -83.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds