Wall clock time and date at job start Mon Mar 30 2020 01:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.89648 * 2 1 4 4 N 1.30431 * 121.82404 * 179.97438 * 3 2 1 5 5 C 1.34321 * 121.47688 * 0.02562 * 4 3 2 6 6 C 1.48567 * 120.20627 * 180.02562 * 5 4 3 7 7 O 1.21463 * 119.99741 * 174.33279 * 6 5 4 8 8 N 1.34769 * 120.00232 * 354.33120 * 6 5 4 9 9 C 1.46499 * 120.00158 * 185.58694 * 8 6 5 10 10 C 1.53000 * 109.47335 * 185.19679 * 9 8 6 11 11 C 1.50703 * 115.54687 * 57.84049 * 10 9 8 12 12 H 1.08003 * 120.00125 * 264.65027 * 11 10 9 13 13 C 1.37868 * 120.00354 * 84.65455 * 11 10 9 14 14 N 1.31523 * 119.99922 * 1.97131 * 13 11 10 15 15 Si 1.86800 * 120.00379 * 181.97348 * 13 11 10 16 16 H 1.48492 * 109.47383 * 59.99645 * 15 13 11 17 17 H 1.48504 * 109.47137 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46860 * 299.99691 * 15 13 11 19 19 C 1.53001 * 117.49907 * 272.17226 * 10 9 8 20 20 C 1.52998 * 117.50169 * 203.51183 * 10 9 8 21 21 C 1.37925 * 119.58299 * 359.97438 * 5 4 3 22 22 C 1.34991 * 119.88847 * 179.73087 * 2 1 3 23 23 O 1.21904 * 120.71365 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.46816 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46756 * 240.00287 * 1 2 3 26 26 H 1.08993 * 109.47361 * 119.99673 * 1 2 3 27 27 H 1.07998 * 119.08449 * 359.97438 * 3 2 1 28 28 H 0.97002 * 119.99889 * 5.59050 * 8 6 5 29 29 H 1.08997 * 109.47059 * 305.20024 * 9 8 6 30 30 H 1.08997 * 109.46690 * 65.19852 * 9 8 6 31 31 H 0.96995 * 119.99747 * 185.02133 * 14 13 11 32 32 H 1.08997 * 117.49972 * 359.97438 * 19 10 9 33 33 H 1.09003 * 117.49602 * 145.01933 * 19 10 9 34 34 H 1.09006 * 117.49538 * 214.98148 * 20 10 9 35 35 H 1.08995 * 117.49772 * 359.97317 * 20 10 9 36 36 H 1.08001 * 120.83446 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1684 0.0000 4 7 3.4404 1.2123 0.0005 5 6 4.1799 0.0910 0.0005 6 6 5.6632 0.1739 0.0017 7 8 6.3279 -0.8374 0.1056 8 7 6.2713 1.3711 -0.1126 9 6 7.7294 1.4434 -0.2347 10 6 8.1706 2.9083 -0.2187 11 6 7.7658 3.6957 1.0009 12 1 6.8657 4.2924 0.9842 13 6 8.5445 3.6545 2.1379 14 7 9.6608 2.9591 2.1455 15 14 8.0141 4.5862 3.6676 16 1 6.6920 4.0835 4.1198 17 1 9.0165 4.3820 4.7440 18 1 7.9125 6.0343 3.3548 19 6 8.2097 3.6490 -1.5569 20 6 9.5151 3.2484 -0.8650 21 6 3.5534 -1.1378 0.0005 22 6 2.1377 -1.1704 0.0055 23 8 1.5393 -2.2324 0.0110 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 -0.5137 -0.8899 27 1 1.5803 2.0940 -0.0004 28 1 5.7436 2.1850 -0.1140 29 1 8.1905 0.9159 0.6003 30 1 8.0389 0.9810 -1.1720 31 1 10.1711 2.8701 2.9656 32 1 7.9216 3.0926 -2.4487 33 1 7.9431 4.7059 -1.5551 34 1 10.1066 4.0419 -0.4082 35 1 10.0855 2.4284 -1.3011 36 1 4.1282 -2.0522 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602148275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:57 Heat of formation + Delta-G solvation = -0.435289 kcal Electronic energy + Delta-G solvation = -20961.351478 eV Core-core repulsion = 17640.173918 eV Total energy + Delta-G solvation = -3321.177561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89649 -39.18767 -37.67141 -36.72827 -35.34719 -33.38999 -31.96600 -31.11783 -28.65758 -26.58281 -25.39671 -24.69230 -23.81368 -21.20104 -20.35159 -19.45925 -18.54443 -17.80723 -17.21781 -16.62548 -16.17915 -15.68474 -15.09587 -14.80570 -14.60460 -14.50347 -14.01647 -13.56857 -13.51161 -13.19260 -13.13104 -12.84167 -12.67283 -11.91596 -11.59864 -10.97225 -10.93929 -10.63051 -10.57658 -10.54101 -10.36483 -10.25263 -9.76006 -9.43153 -9.07034 -8.70250 -8.48761 -8.35052 -8.07344 -6.07916 -4.16922 0.22699 1.53816 2.17823 2.93740 3.27582 3.33656 3.34604 3.45805 3.77510 3.85454 4.27327 4.35821 4.40312 4.76551 4.85161 5.13407 5.16560 5.21174 5.29842 5.43554 5.58980 5.99950 6.08200 6.30388 6.32023 6.44988 6.49358 6.69237 6.81486 7.09807 7.16881 7.36855 7.46095 7.53095 7.56956 7.81376 8.21192 8.32507 8.70848 8.84461 9.50526 11.00278 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.004559 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.328316 B = 6140.091813 C = 6627.465493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.527 5.527 3 C 0.369 3.631 4 N -0.517 5.517 5 C 0.141 3.859 6 C 0.553 3.447 7 O -0.539 6.539 8 N -0.671 5.671 9 C 0.158 3.842 10 C 0.024 3.976 11 C -0.498 4.498 12 H 0.061 0.939 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.211 4.211 20 C -0.143 4.143 21 C -0.222 4.222 22 C 0.518 3.482 23 O -0.533 6.533 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.210 0.790 28 H 0.413 0.587 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.407 -0.536 -5.013 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.246 5.246 3 C 0.084 3.916 4 N -0.240 5.240 5 C 0.020 3.980 6 C 0.336 3.664 7 O -0.417 6.417 8 N -0.319 5.319 9 C 0.036 3.964 10 C 0.024 3.976 11 C -0.535 4.535 12 H 0.079 0.921 13 C -0.130 4.130 14 N -0.511 5.511 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.248 4.248 20 C -0.181 4.181 21 C -0.248 4.248 22 C 0.317 3.683 23 O -0.411 6.411 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.226 0.774 28 H 0.249 0.751 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.507 -1.298 -4.853 16.300 hybrid contribution -0.843 0.206 0.974 1.304 sum -16.349 -1.093 -3.878 16.839 Atomic orbital electron populations 1.22186 0.76430 1.04499 1.04866 1.46733 1.10689 1.08309 1.58831 1.25021 0.89206 0.89757 0.87609 1.68352 1.03952 1.29917 1.21748 1.21711 0.95429 0.88778 0.92097 1.17808 0.84882 0.84799 0.78939 1.90767 1.64440 1.35577 1.50914 1.45841 1.09545 1.07634 1.68900 1.21112 0.77331 0.98341 0.99662 1.19019 0.97448 0.90222 0.90960 1.20298 1.08761 1.28452 0.96018 0.92124 1.24974 0.94168 0.95197 0.98663 1.69977 1.13792 1.40017 1.27325 0.86704 0.78405 0.80386 0.82777 1.20238 1.21313 1.20191 1.23052 1.04849 1.00257 0.96637 1.22474 0.90631 1.02058 1.02970 1.23428 0.92648 1.00711 1.08047 1.17317 0.88714 0.83133 0.79121 1.90936 1.70446 1.28227 1.51460 0.88660 0.89770 0.89768 0.77396 0.75069 0.90584 0.94177 0.92811 0.91663 0.90296 0.89545 0.91745 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.13 59.85 0.61 0.93 16 2 N -0.53 -4.98 2.97 -128.43 -0.38 -5.36 16 3 C 0.37 3.14 11.48 -90.67 -1.04 2.10 16 4 N -0.52 -6.72 9.65 -10.82 -0.10 -6.82 16 5 C 0.14 2.24 6.77 -82.63 -0.56 1.68 16 6 C 0.55 10.79 7.82 -12.00 -0.09 10.69 16 7 O -0.54 -12.06 16.36 5.40 0.09 -11.97 16 8 N -0.67 -13.34 5.37 -61.02 -0.33 -13.67 16 9 C 0.16 3.53 5.57 -4.04 -0.02 3.51 16 10 C 0.02 0.56 1.51 -155.66 -0.23 0.33 16 11 C -0.50 -12.60 8.38 -34.44 -0.29 -12.89 16 12 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 13 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 14 N -0.88 -24.10 12.73 55.43 0.71 -23.39 16 15 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.21 -4.29 9.94 -26.69 -0.27 -4.55 16 20 C -0.14 -3.21 9.26 -26.69 -0.25 -3.46 16 21 C -0.22 -3.40 9.67 -38.41 -0.37 -3.77 16 22 C 0.52 7.23 7.47 -14.88 -0.11 7.12 16 23 O -0.53 -8.85 17.18 5.01 0.09 -8.76 16 24 H 0.09 0.11 7.71 -51.93 -0.40 -0.29 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.21 0.63 7.79 -52.49 -0.41 0.22 16 28 H 0.41 7.75 7.62 -40.82 -0.31 7.44 16 29 H 0.08 1.94 8.09 -51.93 -0.42 1.52 16 30 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.26 6.99 8.32 -40.82 -0.34 6.66 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.17 2.68 7.69 -52.49 -0.40 2.27 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -32.95 320.51 -7.30 -40.25 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.45 Total: 5.93 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.73 Total: 3.54 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.11 Total: -49.24 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.17 Total: -20.73 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.95 -7.30 -40.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602148275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.813 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds