Wall clock time and date at job start Mon Mar 30 2020 01:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.89648 * 2 1 4 4 N 1.30431 * 121.82404 * 179.97438 * 3 2 1 5 5 C 1.34321 * 121.47688 * 0.02562 * 4 3 2 6 6 C 1.48567 * 120.20627 * 180.02562 * 5 4 3 7 7 O 1.21463 * 119.99741 * 174.33279 * 6 5 4 8 8 N 1.34769 * 120.00232 * 354.33120 * 6 5 4 9 9 C 1.46499 * 120.00158 * 185.58694 * 8 6 5 10 10 C 1.53000 * 109.47335 * 185.19679 * 9 8 6 11 11 C 1.50703 * 115.54687 * 57.84049 * 10 9 8 12 12 H 1.08003 * 120.00125 * 264.65027 * 11 10 9 13 13 C 1.37868 * 120.00354 * 84.65455 * 11 10 9 14 14 N 1.31523 * 119.99922 * 1.97131 * 13 11 10 15 15 Si 1.86800 * 120.00379 * 181.97348 * 13 11 10 16 16 H 1.48492 * 109.47383 * 59.99645 * 15 13 11 17 17 H 1.48504 * 109.47137 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46860 * 299.99691 * 15 13 11 19 19 C 1.53001 * 117.49907 * 272.17226 * 10 9 8 20 20 C 1.52998 * 117.50169 * 203.51183 * 10 9 8 21 21 C 1.37925 * 119.58299 * 359.97438 * 5 4 3 22 22 C 1.34991 * 119.88847 * 179.73087 * 2 1 3 23 23 O 1.21904 * 120.71365 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.46816 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46756 * 240.00287 * 1 2 3 26 26 H 1.08993 * 109.47361 * 119.99673 * 1 2 3 27 27 H 1.07998 * 119.08449 * 359.97438 * 3 2 1 28 28 H 0.97002 * 119.99889 * 5.59050 * 8 6 5 29 29 H 1.08997 * 109.47059 * 305.20024 * 9 8 6 30 30 H 1.08997 * 109.46690 * 65.19852 * 9 8 6 31 31 H 0.96995 * 119.99747 * 185.02133 * 14 13 11 32 32 H 1.08997 * 117.49972 * 359.97438 * 19 10 9 33 33 H 1.09003 * 117.49602 * 145.01933 * 19 10 9 34 34 H 1.09006 * 117.49538 * 214.98148 * 20 10 9 35 35 H 1.08995 * 117.49772 * 359.97317 * 20 10 9 36 36 H 1.08001 * 120.83446 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1684 0.0000 4 7 3.4404 1.2123 0.0005 5 6 4.1799 0.0910 0.0005 6 6 5.6632 0.1739 0.0017 7 8 6.3279 -0.8374 0.1056 8 7 6.2713 1.3711 -0.1126 9 6 7.7294 1.4434 -0.2347 10 6 8.1706 2.9083 -0.2187 11 6 7.7658 3.6957 1.0009 12 1 6.8657 4.2924 0.9842 13 6 8.5445 3.6545 2.1379 14 7 9.6608 2.9591 2.1455 15 14 8.0141 4.5862 3.6676 16 1 6.6920 4.0835 4.1198 17 1 9.0165 4.3820 4.7440 18 1 7.9125 6.0343 3.3548 19 6 8.2097 3.6490 -1.5569 20 6 9.5151 3.2484 -0.8650 21 6 3.5534 -1.1378 0.0005 22 6 2.1377 -1.1704 0.0055 23 8 1.5393 -2.2324 0.0110 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 -0.5137 -0.8899 27 1 1.5803 2.0940 -0.0004 28 1 5.7436 2.1850 -0.1140 29 1 8.1905 0.9159 0.6003 30 1 8.0389 0.9810 -1.1720 31 1 10.1711 2.8701 2.9656 32 1 7.9216 3.0926 -2.4487 33 1 7.9431 4.7059 -1.5551 34 1 10.1066 4.0419 -0.4082 35 1 10.0855 2.4284 -1.3011 36 1 4.1282 -2.0522 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602148275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:57 Heat of formation + Delta-G solvation = -23.001764 kcal Electronic energy + Delta-G solvation = -20962.330034 eV Core-core repulsion = 17640.173918 eV Total energy + Delta-G solvation = -3322.156116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.87380 -40.72675 -38.81440 -38.45006 -36.30998 -35.05226 -33.93159 -32.19589 -29.60937 -28.05207 -27.20353 -25.61016 -25.02254 -22.91518 -21.77417 -21.25512 -19.70545 -19.06330 -18.17489 -17.83569 -17.52459 -16.95379 -16.72660 -16.54048 -16.23565 -15.63262 -15.52878 -14.91606 -14.61909 -14.36654 -14.29502 -14.04399 -13.63244 -13.45824 -13.41638 -12.88711 -12.76657 -12.38539 -12.00244 -11.87813 -11.47395 -11.44627 -11.38435 -11.02001 -10.92557 -10.38755 -10.12260 -9.86392 -9.72787 -8.07052 -6.19886 -0.85070 0.54965 1.38972 1.45919 1.46702 1.53117 1.62194 2.03572 2.45756 2.58053 2.90313 3.22055 3.33010 3.54962 3.69639 3.96175 4.11296 4.26296 4.42891 4.46056 4.54157 4.55423 4.67861 4.72230 4.83711 4.99603 5.05844 5.20502 5.31594 5.39638 5.49642 5.60183 5.71221 5.80427 6.39155 6.43966 6.55471 6.73503 6.87751 7.16303 7.49990 9.00604 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.004559 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.328316 B = 6140.091813 C = 6627.465493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.516 5.516 3 C 0.398 3.602 4 N -0.545 5.545 5 C 0.150 3.850 6 C 0.549 3.451 7 O -0.577 6.577 8 N -0.666 5.666 9 C 0.172 3.828 10 C 0.000 4.000 11 C -0.499 4.499 12 H 0.066 0.934 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.947 3.053 16 H -0.273 1.273 17 H -0.295 1.295 18 H -0.267 1.267 19 C -0.175 4.175 20 C -0.154 4.154 21 C -0.244 4.244 22 C 0.518 3.482 23 O -0.568 6.568 24 H 0.151 0.849 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.278 0.722 28 H 0.420 0.580 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.257 0.743 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.609 1.806 -5.610 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.232 5.232 3 C 0.116 3.884 4 N -0.268 5.268 5 C 0.027 3.973 6 C 0.334 3.666 7 O -0.458 6.458 8 N -0.315 5.315 9 C 0.048 3.952 10 C -0.001 4.001 11 C -0.537 4.537 12 H 0.084 0.916 13 C -0.177 4.177 14 N -0.547 5.547 15 Si 0.773 3.227 16 H -0.198 1.198 17 H -0.221 1.221 18 H -0.191 1.191 19 C -0.212 4.212 20 C -0.193 4.193 21 C -0.272 4.272 22 C 0.317 3.683 23 O -0.448 6.448 24 H 0.169 0.831 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.293 0.707 28 H 0.258 0.742 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.787 1.098 -5.461 19.595 hybrid contribution 0.061 -0.477 1.121 1.220 sum -18.726 0.621 -4.340 19.232 Atomic orbital electron populations 1.22618 0.73148 1.08128 1.04688 1.46811 1.12643 1.07125 1.56610 1.26296 0.87971 0.91101 0.83060 1.68332 1.06067 1.28312 1.24128 1.21128 0.93391 0.89968 0.92772 1.18361 0.86699 0.83926 0.77652 1.90738 1.66009 1.36715 1.52295 1.45702 1.08510 1.08207 1.69044 1.20757 0.78672 0.97537 0.98243 1.19063 0.98324 0.90591 0.92084 1.20628 1.08438 1.27889 0.96704 0.91594 1.25692 0.94348 0.96142 1.01475 1.70111 1.15035 1.41920 1.27592 0.85789 0.77775 0.79645 0.79482 1.19780 1.22067 1.19140 1.23045 1.01806 1.00582 0.95796 1.22397 0.91035 1.01898 1.03931 1.23296 0.93896 0.99928 1.10043 1.17105 0.88143 0.84119 0.78965 1.90911 1.70890 1.29823 1.53201 0.83138 0.90139 0.89840 0.70693 0.74197 0.94799 0.93412 0.93387 0.89116 0.89478 0.91765 0.91114 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.32 10.13 127.77 1.29 1.62 16 2 N -0.52 -7.94 2.97 -678.25 -2.01 -9.96 16 3 C 0.40 4.85 11.48 180.37 2.07 6.92 16 4 N -0.54 -12.63 9.65 -188.15 -1.82 -14.45 16 5 C 0.15 4.71 6.77 41.45 0.28 4.99 16 6 C 0.55 21.86 7.82 87.00 0.68 22.54 16 7 O -0.58 -27.08 16.36 -3.60 -0.06 -27.14 16 8 N -0.67 -26.46 5.37 -465.30 -2.50 -28.96 16 9 C 0.17 7.79 5.57 86.38 0.48 8.27 16 10 C 0.00 0.00 1.51 -52.93 -0.08 -0.08 16 11 C -0.50 -25.00 8.38 25.60 0.21 -24.78 16 12 H 0.07 3.16 7.81 -2.91 -0.02 3.14 16 13 C 0.02 1.25 5.43 84.65 0.46 1.71 16 14 N -0.91 -51.27 12.73 21.45 0.27 -51.00 16 15 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C -0.18 -6.76 9.94 30.62 0.30 -6.45 16 20 C -0.15 -6.91 9.26 30.62 0.28 -6.63 16 21 C -0.24 -7.65 9.67 23.03 0.22 -7.43 16 22 C 0.52 14.03 7.47 85.04 0.64 14.67 16 23 O -0.57 -18.87 17.18 -5.00 -0.09 -18.96 16 24 H 0.15 -0.73 7.71 -2.39 -0.02 -0.75 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.28 -0.56 7.79 -2.91 -0.02 -0.58 16 28 H 0.42 15.28 7.62 -92.71 -0.71 14.57 16 29 H 0.03 1.81 8.09 -2.39 -0.02 1.79 16 30 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 31 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.15 5.10 7.69 -2.91 -0.02 5.08 16 Total: -1.00 -76.23 320.51 3.07 -73.16 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.40 Total: 18.08 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.85 Total: 15.35 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -6.05 Total: -104.36 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.14 Total: -46.10 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -76.23 3.07 -73.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602148275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.159 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds