Wall clock time and date at job start Mon Mar 30 2020 01:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31517 * 120.00193 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47177 * 89.99899 * 8 6 4 10 10 H 1.48505 * 109.47036 * 210.00183 * 8 6 4 11 11 H 1.48499 * 109.46776 * 329.99672 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.46909 * 180.02562 * 15 13 12 17 17 C 1.34783 * 119.99661 * 179.97438 * 16 15 13 18 18 O 1.21508 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.48146 * 119.99585 * 179.97438 * 17 16 15 20 20 C 1.39815 * 120.92646 * 359.71863 * 19 17 16 21 21 C 1.38153 * 119.00594 * 179.80217 * 20 19 17 22 22 N 1.31811 * 120.89107 * 0.48638 * 21 20 19 23 23 C 1.31812 * 122.05110 * 359.73877 * 22 21 20 24 24 C 1.38149 * 120.89859 * 0.02867 * 23 22 21 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 0.97003 * 120.00055 * 179.97438 * 7 6 4 29 29 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 30 30 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 31 31 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 32 32 H 0.96998 * 120.00172 * 359.97438 * 16 15 13 33 33 H 1.08001 * 120.50069 * 359.97438 * 20 19 17 34 34 H 1.07997 * 119.55568 * 180.23047 * 21 20 19 35 35 H 1.08008 * 119.55494 * 179.97438 * 23 22 21 36 36 H 1.07995 * 120.50423 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 7 2.6995 0.2132 -4.7088 17 6 3.1220 -0.2023 -5.9194 18 8 3.4612 -1.3579 -6.0809 19 6 3.1717 0.7497 -7.0534 20 6 2.7795 2.0818 -6.8910 21 6 2.8458 2.9365 -7.9744 22 7 3.2622 2.5086 -9.1495 23 6 3.6366 1.2603 -9.3468 24 6 3.6066 0.3395 -8.3174 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9033 -0.5281 4.4375 29 1 2.2491 -1.6317 -1.1527 30 1 3.6492 -1.1201 -3.3980 31 1 1.9777 -1.5506 -3.8326 32 1 2.4284 1.1356 -4.5800 33 1 2.4325 2.4381 -5.9323 34 1 2.5485 3.9683 -7.8579 35 1 3.9707 0.9528 -10.3268 36 1 3.9144 -0.6818 -8.4863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608783639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:23 Heat of formation + Delta-G solvation = -30.810733 kcal Electronic energy + Delta-G solvation = -20311.709220 eV Core-core repulsion = 16989.214481 eV Total energy + Delta-G solvation = -3322.494739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89273 -39.69432 -38.79548 -35.43758 -34.52890 -33.01666 -32.52508 -31.59921 -30.36547 -27.79593 -25.29525 -24.68839 -23.71875 -21.58022 -20.85874 -19.90500 -18.92978 -17.18422 -16.98780 -16.15336 -16.05208 -15.91624 -15.85115 -15.35053 -15.17921 -14.67651 -14.23789 -14.08403 -13.95355 -13.55527 -13.12961 -12.92321 -12.58506 -12.29946 -12.05356 -11.90999 -11.38039 -10.91564 -10.57577 -10.28313 -10.25980 -9.87008 -9.84368 -9.57381 -9.43232 -9.37553 -9.33405 -8.85695 -8.36125 -6.28538 -4.32267 0.36941 0.72299 2.60744 2.70115 2.91571 3.17018 3.29480 3.32051 3.52504 3.75721 4.06112 4.23891 4.25039 4.43092 4.60609 4.71309 5.03917 5.05702 5.13972 5.29858 5.32709 5.38462 5.47937 5.69649 6.03606 6.19745 6.22572 6.25847 6.44176 6.72376 7.02306 7.11076 7.22817 7.38657 7.53071 7.84537 7.98852 8.36649 8.58481 8.72546 9.31002 10.83496 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.003162 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.484451 B = 8852.260987 C = 9359.880427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.050 0.950 4 C -0.539 4.539 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.692 5.692 13 C 0.499 3.501 14 O -0.556 6.556 15 C 0.097 3.903 16 N -0.705 5.705 17 C 0.558 3.442 18 O -0.532 6.532 19 C -0.084 4.084 20 C -0.140 4.140 21 C 0.097 3.903 22 N -0.471 5.471 23 C 0.094 3.906 24 C -0.115 4.115 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.400 0.600 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 3.442 -20.872 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.068 0.932 4 C -0.577 4.577 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.340 5.340 13 C 0.283 3.717 14 O -0.436 6.436 15 C -0.030 4.030 16 N -0.360 5.360 17 C 0.344 3.656 18 O -0.409 6.409 19 C -0.096 4.096 20 C -0.160 4.160 21 C -0.060 4.060 22 N -0.181 5.181 23 C -0.063 4.063 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.234 0.766 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.252 0.748 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.831 4.014 -21.421 21.810 hybrid contribution -0.681 0.071 1.223 1.402 sum 0.150 4.086 -20.198 20.608 Atomic orbital electron populations 1.22462 0.99101 1.01033 0.99426 1.19165 0.90256 0.94694 0.82517 0.93194 1.21015 1.33573 1.14609 0.88462 0.90057 1.24833 0.95456 0.96719 0.95500 1.69864 1.44685 1.40005 0.98104 0.86867 0.80543 0.83505 0.77511 1.20251 1.22067 1.18704 1.46139 1.64222 1.14112 1.09487 1.20316 0.78830 0.87571 0.85002 1.90641 1.52064 1.15972 1.84946 1.21194 1.03926 0.92632 0.85260 1.45597 1.66415 1.15333 1.08638 1.18128 0.77688 0.87410 0.82359 1.90788 1.48143 1.18253 1.83717 1.20347 1.00396 0.94114 0.94699 1.22485 0.98891 0.93230 1.01408 1.22802 0.95309 1.00341 0.87543 1.67572 1.08777 1.17159 1.24562 1.22832 0.95857 0.88305 0.99297 1.22338 0.97187 1.02151 0.91936 0.92664 0.93286 0.94536 0.92168 0.76642 0.88115 0.88233 0.74818 0.83876 0.81914 0.81929 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.96 37.16 0.33 -3.10 16 2 C 0.24 5.33 2.15 -69.08 -0.15 5.18 16 3 H 0.05 1.24 6.64 -51.93 -0.34 0.89 16 4 C -0.54 -14.01 9.31 -34.45 -0.32 -14.33 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 8 Si 0.89 21.05 24.37 -169.99 -4.14 16.91 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 12 N -0.69 -12.53 5.07 -54.93 -0.28 -12.80 16 13 C 0.50 8.30 7.86 -10.99 -0.09 8.22 16 14 O -0.56 -10.85 15.33 5.56 0.09 -10.76 16 15 C 0.10 1.25 6.15 -5.19 -0.03 1.22 16 16 N -0.70 -8.71 5.49 -62.34 -0.34 -9.05 16 17 C 0.56 7.07 7.80 -12.19 -0.10 6.97 16 18 O -0.53 -8.12 16.45 5.36 0.09 -8.03 16 19 C -0.08 -0.89 5.91 -104.65 -0.62 -1.51 16 20 C -0.14 -1.24 9.62 -39.02 -0.38 -1.61 16 21 C 0.10 0.82 11.17 -17.59 -0.20 0.62 16 22 N -0.47 -4.58 10.33 -13.30 -0.14 -4.71 16 23 C 0.09 0.79 11.17 -17.59 -0.20 0.59 16 24 C -0.12 -1.07 9.68 -39.02 -0.38 -1.45 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.40 6.28 8.54 -40.82 -0.35 5.94 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.16 8.14 -51.94 -0.42 0.73 16 32 H 0.41 4.86 5.58 -40.82 -0.23 4.64 16 33 H 0.14 1.06 6.54 -52.49 -0.34 0.72 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.15 1.26 7.74 -52.49 -0.41 0.86 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -32.59 310.02 -5.47 -38.06 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.98 Total: 7.87 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.21 Total: 2.86 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.02 Total: -51.57 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.14 Total: 16.91 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.59 -5.47 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608783639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.246 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds