Wall clock time and date at job start Mon Mar 30 2020 01:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31517 * 120.00193 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47177 * 89.99899 * 8 6 4 10 10 H 1.48505 * 109.47036 * 210.00183 * 8 6 4 11 11 H 1.48499 * 109.46776 * 329.99672 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.46909 * 180.02562 * 15 13 12 17 17 C 1.34783 * 119.99661 * 179.97438 * 16 15 13 18 18 O 1.21508 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.48146 * 119.99585 * 179.97438 * 17 16 15 20 20 C 1.39815 * 120.92646 * 359.71863 * 19 17 16 21 21 C 1.38153 * 119.00594 * 179.80217 * 20 19 17 22 22 N 1.31811 * 120.89107 * 0.48638 * 21 20 19 23 23 C 1.31812 * 122.05110 * 359.73877 * 22 21 20 24 24 C 1.38149 * 120.89859 * 0.02867 * 23 22 21 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 0.97003 * 120.00055 * 179.97438 * 7 6 4 29 29 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 30 30 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 31 31 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 32 32 H 0.96998 * 120.00172 * 359.97438 * 16 15 13 33 33 H 1.08001 * 120.50069 * 359.97438 * 20 19 17 34 34 H 1.07997 * 119.55568 * 180.23047 * 21 20 19 35 35 H 1.08008 * 119.55494 * 179.97438 * 23 22 21 36 36 H 1.07995 * 120.50423 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 7 2.6995 0.2132 -4.7088 17 6 3.1220 -0.2023 -5.9194 18 8 3.4612 -1.3579 -6.0809 19 6 3.1717 0.7497 -7.0534 20 6 2.7795 2.0818 -6.8910 21 6 2.8458 2.9365 -7.9744 22 7 3.2622 2.5086 -9.1495 23 6 3.6366 1.2603 -9.3468 24 6 3.6066 0.3395 -8.3174 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9033 -0.5281 4.4375 29 1 2.2491 -1.6317 -1.1527 30 1 3.6492 -1.1201 -3.3980 31 1 1.9777 -1.5506 -3.8326 32 1 2.4284 1.1356 -4.5800 33 1 2.4325 2.4381 -5.9323 34 1 2.5485 3.9683 -7.8579 35 1 3.9707 0.9528 -10.3268 36 1 3.9144 -0.6818 -8.4863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608783639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:22 Heat of formation + Delta-G solvation = -56.468794 kcal Electronic energy + Delta-G solvation = -20312.821837 eV Core-core repulsion = 16989.214481 eV Total energy + Delta-G solvation = -3323.607356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74830 -40.85838 -39.89521 -37.03444 -35.68839 -34.45602 -33.76896 -32.30241 -31.97604 -28.94713 -27.22358 -25.56019 -24.40786 -23.13596 -21.82597 -21.40902 -19.98848 -18.81493 -17.96673 -17.58824 -17.28310 -16.96264 -16.67342 -16.52182 -16.35795 -15.85755 -15.59082 -14.99894 -14.91311 -14.73932 -14.61897 -14.19496 -14.12602 -13.88708 -13.58625 -13.13696 -12.78304 -12.69811 -12.14621 -11.63977 -11.56284 -11.28992 -11.03550 -10.97121 -10.87253 -10.56527 -10.38204 -10.21278 -9.95506 -8.38210 -6.44970 -0.39416 0.08157 1.28736 1.36767 1.45455 1.55099 1.67269 1.72339 2.26131 2.46143 2.82277 2.98205 3.39515 3.49967 3.68484 3.82032 3.92656 4.05401 4.28502 4.32338 4.44912 4.52660 4.55777 4.69945 4.77915 4.80607 4.96387 5.00997 5.07072 5.30867 5.41027 5.56762 5.59339 6.09741 6.25619 6.57033 6.72608 6.88136 6.91524 7.14527 7.30607 8.77005 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.003162 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.484451 B = 8852.260987 C = 9359.880427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.029 0.971 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.941 3.059 9 H -0.261 1.261 10 H -0.295 1.295 11 H -0.257 1.257 12 N -0.693 5.693 13 C 0.504 3.496 14 O -0.582 6.582 15 C 0.107 3.893 16 N -0.703 5.703 17 C 0.561 3.439 18 O -0.562 6.562 19 C -0.102 4.102 20 C -0.138 4.138 21 C 0.094 3.906 22 N -0.489 5.489 23 C 0.096 3.904 24 C -0.120 4.120 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.270 0.730 29 H 0.411 0.589 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.416 0.584 33 H 0.156 0.844 34 H 0.189 0.811 35 H 0.191 0.809 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 4.336 -22.656 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.047 0.953 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.173 4.173 7 N -0.574 5.574 8 Si 0.768 3.232 9 H -0.186 1.186 10 H -0.223 1.223 11 H -0.182 1.182 12 N -0.342 5.342 13 C 0.290 3.710 14 O -0.464 6.464 15 C -0.020 4.020 16 N -0.358 5.358 17 C 0.349 3.651 18 O -0.441 6.441 19 C -0.113 4.113 20 C -0.159 4.159 21 C -0.062 4.062 22 N -0.199 5.199 23 C -0.061 4.061 24 C -0.141 4.141 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.247 0.753 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.256 0.744 33 H 0.173 0.827 34 H 0.206 0.794 35 H 0.208 0.792 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.106 4.902 -23.235 23.747 hybrid contribution -0.387 -0.227 1.709 1.767 sum -0.281 4.675 -21.526 22.030 Atomic orbital electron populations 1.22361 0.97623 1.01830 0.99685 1.18807 0.91303 0.93343 0.82780 0.95315 1.21273 1.32444 1.13686 0.89974 0.92470 1.25590 0.96873 0.99445 0.95347 1.69983 1.46695 1.41963 0.98718 0.85978 0.79658 0.80252 0.77318 1.18640 1.22256 1.18189 1.45939 1.64704 1.14679 1.08902 1.20804 0.77712 0.87163 0.85336 1.90629 1.53008 1.17297 1.85435 1.21125 1.04760 0.92538 0.83536 1.45597 1.66318 1.15406 1.08484 1.18404 0.76773 0.87318 0.82633 1.90769 1.49617 1.19572 1.84182 1.20321 1.02093 0.94501 0.94428 1.22623 0.98471 0.92573 1.02190 1.23241 0.94521 1.01424 0.86998 1.67645 1.09279 1.17765 1.25187 1.23267 0.94932 0.87700 1.00188 1.22473 0.97148 1.02649 0.91813 0.91648 0.94085 0.93107 0.92062 0.75286 0.86920 0.86387 0.74405 0.82676 0.79419 0.79183 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.33 8.96 71.98 0.65 -5.68 16 2 C 0.24 10.68 2.15 44.25 0.10 10.78 16 3 H 0.03 1.41 6.64 -2.39 -0.02 1.39 16 4 C -0.54 -27.97 9.31 25.60 0.24 -27.73 16 5 H 0.06 3.19 7.98 -2.91 -0.02 3.17 16 6 C 0.03 1.49 5.45 84.65 0.46 1.95 16 7 N -0.93 -54.93 13.96 21.44 0.30 -54.63 16 8 Si 0.94 43.01 24.37 68.60 1.67 44.68 16 9 H -0.26 -11.21 6.87 99.48 0.68 -10.53 16 10 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.26 -11.47 6.53 99.48 0.65 -10.82 16 12 N -0.69 -24.25 5.07 -446.09 -2.26 -26.51 16 13 C 0.50 15.96 7.86 87.66 0.69 16.65 16 14 O -0.58 -21.83 15.33 -3.02 -0.05 -21.88 16 15 C 0.11 2.56 6.15 85.63 0.53 3.08 16 16 N -0.70 -16.23 5.49 -469.43 -2.58 -18.81 16 17 C 0.56 13.51 7.80 86.87 0.68 14.19 16 18 O -0.56 -16.59 16.45 -3.74 -0.06 -16.65 16 19 C -0.10 -2.02 5.91 -19.88 -0.12 -2.14 16 20 C -0.14 -2.21 9.62 22.63 0.22 -1.99 16 21 C 0.09 1.40 11.17 84.68 0.95 2.35 16 22 N -0.49 -8.50 10.33 -196.00 -2.03 -10.52 16 23 C 0.10 1.41 11.17 84.67 0.95 2.36 16 24 C -0.12 -2.07 9.68 22.63 0.22 -1.85 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.04 1.71 3.27 -2.39 -0.01 1.70 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.41 12.47 8.54 -92.71 -0.79 11.67 16 30 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.42 9.13 5.58 -92.71 -0.52 8.61 16 33 H 0.16 2.01 6.54 -2.91 -0.02 1.99 16 34 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.15 2.44 7.74 -2.91 -0.02 2.41 16 Total: -1.00 -69.27 310.02 0.29 -68.98 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.25 Total: 23.39 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.55 Total: 11.96 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -6.56 Total: -110.47 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.11 Total: -38.53 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.67 Total: 44.68 kcal Total: -69.27 0.29 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608783639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.508 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds