Wall clock time and date at job start Mon Mar 30 2020 02:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99983 * 2 1 4 4 C 1.52995 * 109.47062 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47164 * 65.00310 * 4 3 2 6 6 C 1.46500 * 119.99762 * 270.00075 * 5 4 3 7 7 C 1.50700 * 109.47092 * 262.25760 * 6 5 4 8 8 H 1.08004 * 119.99981 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00320 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99730 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00120 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46881 * 89.99863 * 11 9 7 13 13 H 1.48496 * 109.46981 * 209.99737 * 11 9 7 14 14 H 1.48494 * 109.47027 * 329.99734 * 11 9 7 15 15 C 1.34770 * 120.00006 * 89.99470 * 5 4 3 16 16 O 1.21679 * 120.00250 * 2.24134 * 15 5 4 17 17 C 1.46792 * 120.00007 * 182.23491 * 15 5 4 18 18 C 1.36414 * 125.85219 * 169.28757 * 17 15 5 19 19 C 1.41276 * 107.03474 * 180.13951 * 18 17 15 20 20 C 1.43200 * 126.45359 * 179.83825 * 19 18 17 21 21 N 9.26455 * 116.73681 * 275.31032 * 2 1 3 22 22 C 1.38182 * 107.09339 * 359.57485 * 19 18 17 23 23 N 1.34432 * 108.38041 * 0.26394 * 22 19 18 24 24 H 0.97004 * 125.40544 * 180.02562 * 23 22 19 25 25 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47394 * 299.99782 * 1 2 3 27 27 H 1.08999 * 109.46944 * 60.00286 * 1 2 3 28 28 H 1.09000 * 109.46987 * 60.00075 * 3 2 1 29 29 H 1.09001 * 109.46889 * 299.99949 * 3 2 1 30 30 H 1.08992 * 109.47577 * 305.00016 * 4 3 2 31 31 H 1.09002 * 109.47034 * 184.99828 * 4 3 2 32 32 H 1.09001 * 109.47462 * 22.25420 * 6 5 4 33 33 H 1.08997 * 109.47425 * 142.25671 * 6 5 4 34 34 H 0.97002 * 119.99744 * 179.97438 * 10 9 7 35 35 H 1.07995 * 126.47962 * 359.97301 * 18 17 15 36 36 H 1.07994 * 125.81340 * 180.28724 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5461 -1.2828 -1.1272 8 1 6.2904 -0.5219 -0.9439 9 6 5.9136 -2.6111 -1.1672 10 7 5.0074 -3.5376 -1.3909 11 14 7.6986 -3.0947 -0.9037 12 1 7.9397 -3.3284 0.5428 13 1 7.9917 -4.3376 -1.6616 14 1 8.5833 -2.0025 -1.3829 15 6 4.2632 1.3329 -2.3200 16 8 4.1949 2.5447 -2.2337 17 6 4.6580 0.7086 -3.5885 18 6 4.7739 1.3443 -4.7899 19 6 5.1711 0.3728 -5.7356 20 6 5.4104 0.5911 -7.1305 21 7 5.5971 0.7658 -8.2385 22 6 5.2912 -0.8265 -5.0598 23 7 4.9812 -0.6183 -3.7684 24 1 4.9849 -1.2950 -3.0734 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1765 0.0902 32 1 3.4861 -1.3602 -0.5756 33 1 3.7814 -1.2264 -2.3258 34 1 5.2660 -4.4720 -1.4195 35 1 4.5932 2.3915 -4.9823 36 1 5.5846 -1.7704 -5.4950 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610491594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:28 Heat of formation + Delta-G solvation = 5.727390 kcal Electronic energy + Delta-G solvation = -21580.344501 eV Core-core repulsion = 18259.434175 eV Total energy + Delta-G solvation = -3320.910327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14024 -38.80139 -37.40355 -36.01340 -35.33127 -33.11514 -31.12161 -30.15834 -28.78265 -27.40960 -26.03478 -23.61779 -23.22286 -22.10303 -20.91437 -19.55450 -17.64507 -16.86708 -16.32986 -16.08434 -15.94281 -15.24122 -15.18593 -14.71422 -14.53771 -14.37335 -13.56990 -13.35906 -13.12266 -12.91555 -12.67359 -12.50429 -12.41657 -12.19633 -11.86280 -11.66182 -11.56015 -11.35035 -11.22233 -11.05147 -10.68398 -10.42423 -10.06918 -9.56021 -9.36728 -8.95074 -8.58380 -8.07772 -7.78470 -6.56017 -4.70408 2.05606 2.16771 3.03218 3.07616 3.12653 3.16150 3.62746 3.77087 3.89518 4.01710 4.05101 4.15414 4.62751 4.74591 5.23648 5.30260 5.40181 5.45119 5.56637 5.56846 5.59930 5.76806 5.78301 5.93175 6.14312 6.21093 6.33391 6.42036 6.89168 6.91265 7.15064 7.32128 7.37843 7.46600 7.62470 7.98398 8.03645 8.08358 8.45720 8.78351 9.01108 10.45915 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.008081 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.240189 B = 3463.996991 C = 5280.232574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.588 5.588 6 C 0.220 3.780 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.066 3.934 10 N -0.879 5.879 11 Si 0.898 3.102 12 H -0.274 1.274 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.587 3.413 16 O -0.562 6.562 17 C -0.031 4.031 18 C -0.081 4.081 19 C -0.159 4.159 20 C 0.305 3.695 21 N -0.465 5.465 22 C 0.079 3.921 23 N -0.492 5.492 24 H 0.458 0.542 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.274 0.726 35 H 0.150 0.850 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 2.932 2.212 6.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.317 5.317 6 C 0.100 3.900 7 C -0.603 4.603 8 H 0.089 0.911 9 C -0.140 4.140 10 N -0.515 5.515 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.193 1.193 15 C 0.376 3.624 16 O -0.443 6.443 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.170 4.170 20 C -0.009 4.009 21 N -0.142 5.142 22 C -0.070 4.070 23 N -0.100 5.100 24 H 0.319 0.681 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.645 3.294 0.830 5.755 hybrid contribution 0.636 -0.690 0.935 1.324 sum -4.010 2.604 1.765 5.096 Atomic orbital electron populations 1.22689 0.81950 1.02452 0.99322 1.88020 1.18868 1.27514 1.95255 1.23042 0.95064 0.84985 1.00093 1.21396 0.91246 0.99932 0.87519 1.47986 1.63922 1.09377 1.10432 1.19814 0.97274 0.74000 0.98950 1.21732 0.93779 0.92908 1.51917 0.91089 1.25092 0.98702 0.96077 0.94128 1.69940 1.33606 1.01565 1.46344 0.86454 0.83652 0.78464 0.79067 1.19921 1.20595 1.19252 1.17093 0.76919 0.85933 0.82418 1.90734 1.56113 1.13301 1.84120 1.19974 1.14261 0.84608 0.95641 1.20817 1.01671 0.98772 0.89535 1.15397 1.20190 0.95175 0.86215 1.24863 0.91708 0.92712 0.91579 1.81235 1.12489 1.08549 1.11933 1.22337 1.01312 0.98528 0.84794 1.44307 1.44780 1.10782 1.10160 0.68117 0.89848 0.94627 0.94500 0.92951 0.93123 0.89346 0.88914 0.91981 0.94846 0.91631 0.83233 0.80541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.17 9.68 -35.23 -0.34 -6.51 16 3 C 0.05 0.68 6.28 37.16 0.23 0.92 16 4 C 0.12 2.05 5.79 -4.04 -0.02 2.03 16 5 N -0.59 -11.53 2.44 -176.57 -0.43 -11.96 16 6 C 0.22 4.72 4.47 -5.19 -0.02 4.69 16 7 C -0.56 -12.85 7.30 -34.44 -0.25 -13.10 16 8 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.07 1.52 5.06 -17.82 -0.09 1.43 16 10 N -0.88 -20.89 13.29 55.43 0.74 -20.16 16 11 Si 0.90 18.36 29.54 -169.99 -5.02 13.34 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 15 C 0.59 11.90 7.57 -12.81 -0.10 11.81 16 16 O -0.56 -12.03 16.44 5.21 0.09 -11.95 16 17 C -0.03 -0.58 6.57 -82.41 -0.54 -1.12 16 18 C -0.08 -1.39 10.55 -39.09 -0.41 -1.80 16 19 C -0.16 -2.56 5.97 -106.84 -0.64 -3.20 16 20 C 0.31 5.00 15.83 -22.44 -0.36 4.65 16 21 N -0.46 -8.25 18.55 41.88 0.78 -7.47 16 22 C 0.08 1.25 11.90 -16.43 -0.20 1.05 16 23 N -0.49 -9.07 4.71 -9.27 -0.04 -9.11 16 24 H 0.46 9.18 3.23 -40.82 -0.13 9.05 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 31 H 0.09 1.48 7.39 -51.93 -0.38 1.09 16 32 H 0.06 1.44 7.29 -51.93 -0.38 1.06 16 33 H 0.03 0.74 5.16 -51.93 -0.27 0.48 16 34 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 35 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -26.43 318.36 -4.81 -31.24 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.09 Total: 8.92 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.28 Total: 8.86 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 1.04 Total: -48.70 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.26 Total: -18.46 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.43 -4.81 -31.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610491594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.965 kcal (2) G-P(sol) polarization free energy of solvation -26.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds