Wall clock time and date at job start Mon Mar 30 2020 02:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99983 * 2 1 4 4 C 1.52995 * 109.47062 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47164 * 65.00310 * 4 3 2 6 6 C 1.46500 * 119.99762 * 270.00075 * 5 4 3 7 7 C 1.50700 * 109.47092 * 262.25760 * 6 5 4 8 8 H 1.08004 * 119.99981 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00320 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99730 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00120 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46881 * 89.99863 * 11 9 7 13 13 H 1.48496 * 109.46981 * 209.99737 * 11 9 7 14 14 H 1.48494 * 109.47027 * 329.99734 * 11 9 7 15 15 C 1.34770 * 120.00006 * 89.99470 * 5 4 3 16 16 O 1.21679 * 120.00250 * 2.24134 * 15 5 4 17 17 C 1.46792 * 120.00007 * 182.23491 * 15 5 4 18 18 C 1.36414 * 125.85219 * 169.28757 * 17 15 5 19 19 C 1.41276 * 107.03474 * 180.13951 * 18 17 15 20 20 C 1.43200 * 126.45359 * 179.83825 * 19 18 17 21 21 N 9.26455 * 116.73681 * 275.31032 * 2 1 3 22 22 C 1.38182 * 107.09339 * 359.57485 * 19 18 17 23 23 N 1.34432 * 108.38041 * 0.26394 * 22 19 18 24 24 H 0.97004 * 125.40544 * 180.02562 * 23 22 19 25 25 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47394 * 299.99782 * 1 2 3 27 27 H 1.08999 * 109.46944 * 60.00286 * 1 2 3 28 28 H 1.09000 * 109.46987 * 60.00075 * 3 2 1 29 29 H 1.09001 * 109.46889 * 299.99949 * 3 2 1 30 30 H 1.08992 * 109.47577 * 305.00016 * 4 3 2 31 31 H 1.09002 * 109.47034 * 184.99828 * 4 3 2 32 32 H 1.09001 * 109.47462 * 22.25420 * 6 5 4 33 33 H 1.08997 * 109.47425 * 142.25671 * 6 5 4 34 34 H 0.97002 * 119.99744 * 179.97438 * 10 9 7 35 35 H 1.07995 * 126.47962 * 359.97301 * 18 17 15 36 36 H 1.07994 * 125.81340 * 180.28724 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5461 -1.2828 -1.1272 8 1 6.2904 -0.5219 -0.9439 9 6 5.9136 -2.6111 -1.1672 10 7 5.0074 -3.5376 -1.3909 11 14 7.6986 -3.0947 -0.9037 12 1 7.9397 -3.3284 0.5428 13 1 7.9917 -4.3376 -1.6616 14 1 8.5833 -2.0025 -1.3829 15 6 4.2632 1.3329 -2.3200 16 8 4.1949 2.5447 -2.2337 17 6 4.6580 0.7086 -3.5885 18 6 4.7739 1.3443 -4.7899 19 6 5.1711 0.3728 -5.7356 20 6 5.4104 0.5911 -7.1305 21 7 5.5971 0.7658 -8.2385 22 6 5.2912 -0.8265 -5.0598 23 7 4.9812 -0.6183 -3.7684 24 1 4.9849 -1.2950 -3.0734 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1765 0.0902 32 1 3.4861 -1.3602 -0.5756 33 1 3.7814 -1.2264 -2.3258 34 1 5.2660 -4.4720 -1.4195 35 1 4.5932 2.3915 -4.9823 36 1 5.5846 -1.7704 -5.4950 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610491594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:27 Heat of formation + Delta-G solvation = -9.004852 kcal Electronic energy + Delta-G solvation = -21580.983339 eV Core-core repulsion = 18259.434175 eV Total energy + Delta-G solvation = -3321.549165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.55077 -40.26457 -38.64236 -37.40427 -36.88834 -34.79272 -32.52603 -31.53229 -30.19630 -28.98141 -27.13103 -25.20069 -24.67884 -23.44167 -22.30265 -20.96830 -19.16741 -18.56068 -17.75523 -17.33722 -17.26326 -16.72855 -16.57438 -16.08357 -16.04141 -15.65480 -14.95622 -14.72026 -14.57259 -14.32627 -14.24749 -13.93054 -13.76287 -13.54962 -13.28253 -13.03736 -12.83572 -12.80290 -12.73198 -12.52016 -12.21816 -11.90460 -11.76832 -11.07264 -10.72086 -10.54984 -9.99555 -9.60265 -9.19525 -8.31784 -6.51735 0.63587 0.83286 1.40644 1.47230 1.54075 1.74145 2.17489 2.30335 2.35397 2.51760 2.73494 2.94264 2.98365 3.25413 3.81305 4.16174 4.19348 4.25714 4.40448 4.41879 4.55252 4.56949 4.61837 4.75902 4.78168 4.87059 4.92168 5.00959 5.18959 5.54220 5.57759 5.69944 5.87237 5.92825 6.28266 6.45750 6.58659 6.67107 6.71104 7.17913 7.27706 8.69569 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.008081 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.240189 B = 3463.996991 C = 5280.232574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.053 3.947 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.237 3.763 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.039 3.961 10 N -0.899 5.899 11 Si 0.947 3.053 12 H -0.277 1.277 13 H -0.274 1.274 14 H -0.272 1.272 15 C 0.581 3.419 16 O -0.581 6.581 17 C -0.061 4.061 18 C -0.070 4.070 19 C -0.157 4.157 20 C 0.323 3.677 21 N -0.485 5.485 22 C 0.097 3.903 23 N -0.506 5.506 24 H 0.452 0.548 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.277 0.723 35 H 0.160 0.840 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 2.700 1.966 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.024 4.024 4 C -0.008 4.008 5 N -0.319 5.319 6 C 0.116 3.884 7 C -0.605 4.605 8 H 0.076 0.924 9 C -0.165 4.165 10 N -0.536 5.536 11 Si 0.772 3.228 12 H -0.203 1.203 13 H -0.199 1.199 14 H -0.196 1.196 15 C 0.372 3.628 16 O -0.463 6.463 17 C -0.174 4.174 18 C -0.097 4.097 19 C -0.168 4.168 20 C 0.010 3.990 21 N -0.163 5.163 22 C -0.052 4.052 23 N -0.112 5.112 24 H 0.311 0.689 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.178 0.822 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.526 3.078 0.587 5.505 hybrid contribution 0.559 -0.617 1.005 1.305 sum -3.967 2.460 1.592 4.932 Atomic orbital electron populations 1.22873 0.79974 1.03379 1.00636 1.87971 1.21151 1.28293 1.95509 1.22963 0.93508 0.84823 1.01139 1.21596 0.92941 0.99892 0.86322 1.48019 1.63844 1.08713 1.11340 1.19489 0.96141 0.74912 0.97878 1.21718 0.94018 0.92780 1.51983 0.92424 1.25556 1.01204 0.95946 0.93833 1.69994 1.34828 1.01846 1.46900 0.85698 0.80333 0.78134 0.78617 1.20298 1.19863 1.19638 1.17315 0.76729 0.85843 0.82959 1.90705 1.57222 1.13848 1.84556 1.19972 1.16456 0.85250 0.95753 1.20996 1.00261 0.99393 0.89100 1.15294 1.20454 0.95128 0.85904 1.24688 0.91026 0.92057 0.91237 1.81265 1.13279 1.09202 1.12514 1.22933 0.98907 0.99718 0.83600 1.44244 1.45666 1.10377 1.10956 0.68947 0.89219 0.92385 0.94037 0.89752 0.94024 0.89523 0.88337 0.94117 0.95243 0.91367 0.82225 0.77098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.18 9.68 -148.98 -1.44 -14.63 16 3 C 0.05 1.54 6.28 71.98 0.45 1.99 16 4 C 0.12 3.85 5.79 86.38 0.50 4.35 16 5 N -0.59 -23.35 2.44 -830.76 -2.03 -25.38 16 6 C 0.24 10.27 4.47 85.63 0.38 10.65 16 7 C -0.57 -25.79 7.30 25.60 0.19 -25.60 16 8 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.04 1.76 5.06 84.65 0.43 2.19 16 10 N -0.90 -42.26 13.29 21.45 0.28 -41.98 16 11 Si 0.95 36.92 29.54 68.60 2.03 38.95 16 12 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 13 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 14 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 15 C 0.58 23.66 7.57 86.48 0.65 24.31 16 16 O -0.58 -24.91 16.44 -4.28 -0.07 -24.98 16 17 C -0.06 -2.31 6.57 40.03 0.26 -2.04 16 18 C -0.07 -2.32 10.55 22.59 0.24 -2.08 16 19 C -0.16 -4.76 5.97 -21.30 -0.13 -4.88 16 20 C 0.32 9.94 15.83 88.32 1.40 11.34 16 21 N -0.48 -16.35 18.55 19.02 0.35 -15.99 16 22 C 0.10 2.85 11.90 84.28 1.00 3.85 16 23 N -0.51 -18.17 4.71 -183.25 -0.86 -19.03 16 24 H 0.45 17.89 3.23 -92.71 -0.30 17.59 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 2.88 8.07 -2.39 -0.02 2.86 16 31 H 0.10 3.13 7.39 -2.39 -0.02 3.12 16 32 H 0.04 1.93 7.29 -2.39 -0.02 1.91 16 33 H 0.03 1.33 5.16 -2.39 -0.01 1.31 16 34 H 0.28 12.35 8.31 -92.71 -0.77 11.58 16 35 H 0.16 4.88 8.06 -2.91 -0.02 4.85 16 36 H 0.21 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -55.17 318.36 5.70 -49.47 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.82 Total: 27.62 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 6.63 Total: 25.95 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -2.26 Total: -102.38 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.51 Total: -39.61 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -55.17 5.70 -49.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610491594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.463 kcal (2) G-P(sol) polarization free energy of solvation -55.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds