Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00074 * 2 1 4 4 C 1.52996 * 109.47219 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47007 * 65.00317 * 4 3 2 6 6 C 1.46502 * 120.00128 * 269.99832 * 5 4 3 7 7 C 1.50698 * 109.47116 * 274.71454 * 6 5 4 8 8 H 1.07997 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99787 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99899 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00220 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47335 * 89.99548 * 11 9 7 13 13 H 1.48502 * 109.47457 * 209.99685 * 11 9 7 14 14 H 1.48501 * 109.47132 * 329.99717 * 11 9 7 15 15 C 1.34780 * 120.00535 * 89.99953 * 5 4 3 16 16 O 1.21618 * 119.99374 * 4.05626 * 15 5 4 17 17 C 1.47369 * 120.00521 * 184.05989 * 15 5 4 18 18 C 1.38125 * 126.47539 * 145.34587 * 17 15 5 19 19 N 1.34425 * 108.39311 * 180.02562 * 18 17 15 20 20 H 0.97002 * 125.39121 * 179.97438 * 19 18 17 21 21 C 1.37708 * 109.21792 * 359.76769 * 19 18 17 22 22 C 1.43199 * 125.83956 * 180.23991 * 21 19 18 23 23 N 8.57188 * 127.50767 * 246.81025 * 2 1 3 24 24 C 1.36357 * 108.31422 * 0.37602 * 21 19 18 25 25 H 1.08996 * 109.47236 * 299.99926 * 1 2 3 26 26 H 1.08994 * 109.46993 * 60.00203 * 1 2 3 27 27 H 1.09003 * 109.47144 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47414 * 59.99986 * 3 2 1 29 29 H 1.09005 * 109.47114 * 299.99966 * 3 2 1 30 30 H 1.08996 * 109.47596 * 305.00062 * 4 3 2 31 31 H 1.09007 * 109.47240 * 184.99967 * 4 3 2 32 32 H 1.09006 * 109.46506 * 34.71396 * 6 5 4 33 33 H 1.09002 * 109.47371 * 154.71117 * 6 5 4 34 34 H 0.96998 * 120.00526 * 180.02562 * 10 9 7 35 35 H 1.08004 * 125.79961 * 0.03542 * 18 17 15 36 36 H 1.07994 * 126.49302 * 179.89351 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8926 -1.3404 7 6 5.4625 -1.3084 -0.8317 8 1 6.1582 -0.5624 -0.4769 9 6 5.8148 -2.6413 -0.8184 10 7 6.9982 -3.0043 -0.3741 11 14 4.6114 -3.9317 -1.4316 12 1 4.8162 -4.1480 -2.8864 13 1 4.8394 -5.2064 -0.7047 14 1 3.2218 -3.4665 -1.1911 15 6 4.2633 1.3329 -2.3201 16 8 4.2272 2.5448 -2.2246 17 6 4.6205 0.7052 -3.6047 18 6 4.3070 1.1771 -4.8644 19 7 4.8088 0.3239 -5.7740 20 1 4.7309 0.4188 -6.7362 21 6 5.4549 -0.7036 -5.1236 22 6 6.1215 -1.8050 -5.7506 23 7 6.6482 -2.6776 -6.2504 24 6 5.3487 -0.4944 -3.7803 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 3.3313 -1.3641 -0.7360 33 1 3.9967 -1.2040 -2.3792 34 1 7.2463 -3.9419 -0.3650 35 1 3.7531 2.0785 -5.0816 36 1 5.7488 -1.1232 -2.9988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611472260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = 8.569435 kcal Electronic energy + Delta-G solvation = -21664.446769 eV Core-core repulsion = 18343.659683 eV Total energy + Delta-G solvation = -3320.787086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20419 -38.85194 -37.37323 -36.17842 -35.00889 -32.63233 -31.52470 -29.72277 -29.32932 -27.59475 -26.04982 -23.52870 -22.51722 -22.16380 -20.99265 -19.71931 -17.71720 -16.99925 -16.41536 -16.02109 -15.68686 -15.37609 -15.13765 -14.64450 -14.61351 -14.09575 -13.80408 -13.66330 -13.07469 -12.79946 -12.67936 -12.59912 -12.51269 -12.10084 -11.88457 -11.73490 -11.51974 -11.20019 -10.95530 -10.77514 -10.48021 -10.18028 -9.58580 -9.47228 -9.20744 -8.78786 -8.53561 -8.09888 -7.65291 -6.18246 -4.18601 1.65007 2.38030 2.54007 3.24128 3.33677 3.36037 3.37057 3.65466 3.83951 3.95020 4.13530 4.32328 4.35417 5.12951 5.18912 5.32921 5.34033 5.44596 5.60264 5.61865 5.66243 5.70740 5.77353 5.94285 6.14198 6.38663 6.50971 6.62931 6.88688 6.96907 7.13634 7.37759 7.38709 7.44300 7.55968 7.70141 8.19739 8.48878 8.88086 8.98755 9.41198 10.93453 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.008432 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.635030 B = 3319.913972 C = 4634.785473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.575 5.575 6 C 0.200 3.800 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.887 5.887 11 Si 0.857 3.143 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.257 1.257 15 C 0.590 3.410 16 O -0.577 6.577 17 C -0.215 4.215 18 C 0.090 3.910 19 N -0.529 5.529 20 H 0.420 0.580 21 C 0.018 3.982 22 C 0.289 3.711 23 N -0.422 5.422 24 C -0.055 4.055 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.267 0.733 35 H 0.184 0.816 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 7.706 -5.598 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.303 5.303 6 C 0.079 3.921 7 C -0.577 4.577 8 H 0.099 0.901 9 C -0.125 4.125 10 N -0.524 5.524 11 Si 0.683 3.317 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.181 1.181 15 C 0.379 3.621 16 O -0.460 6.460 17 C -0.225 4.225 18 C -0.051 4.051 19 N -0.124 5.124 20 H 0.257 0.743 21 C -0.092 4.092 22 C -0.026 4.026 23 N -0.099 5.099 24 C -0.082 4.082 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.201 0.799 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.139 6.586 -6.419 13.689 hybrid contribution -0.962 -0.321 -0.491 1.127 sum -11.101 6.265 -6.911 14.500 Atomic orbital electron populations 1.22680 0.82207 1.02296 0.99290 1.88034 1.18639 1.27763 1.95232 1.23066 0.95326 0.84750 0.99867 1.21363 0.90777 1.00012 0.87999 1.47627 1.63586 1.08940 1.10146 1.20158 0.98032 0.75619 0.98325 1.21429 0.99302 0.93610 1.43377 0.90126 1.24844 0.94877 0.98148 0.94616 1.69882 1.19710 1.17342 1.45458 0.87112 0.82968 0.81934 0.79684 1.19710 1.20914 1.18093 1.17342 0.76061 0.85586 0.83112 1.90679 1.56141 1.13966 1.85197 1.19565 1.10531 0.99454 0.92904 1.22162 1.00124 0.95345 0.87504 1.41468 1.42875 1.19006 1.09098 0.74295 1.15337 1.11079 0.91916 0.90872 1.24287 0.92723 0.92261 0.93316 1.81204 1.10956 1.10461 1.07261 1.22639 0.95845 0.95969 0.93792 0.94590 0.94612 0.90037 0.93033 0.93329 0.89080 0.88984 0.93700 0.94242 0.92332 0.79912 0.78949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.20 9.46 -35.23 -0.33 -6.53 16 3 C 0.05 0.71 6.28 37.16 0.23 0.95 16 4 C 0.12 2.13 5.86 -4.04 -0.02 2.11 16 5 N -0.57 -11.52 2.42 -176.35 -0.43 -11.95 16 6 C 0.20 4.39 3.61 -5.19 -0.02 4.37 16 7 C -0.54 -13.76 7.84 -34.44 -0.27 -14.03 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 9 C 0.08 2.11 5.27 -17.82 -0.09 2.02 16 10 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 11 Si 0.86 20.06 27.47 -169.99 -4.67 15.39 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 15 C 0.59 11.66 7.60 -12.54 -0.10 11.57 16 16 O -0.58 -12.09 16.61 5.26 0.09 -12.00 16 17 C -0.21 -3.76 5.46 -105.01 -0.57 -4.33 16 18 C 0.09 1.15 11.87 -16.46 -0.20 0.95 16 19 N -0.53 -6.07 6.02 -10.29 -0.06 -6.14 16 20 H 0.42 3.09 8.96 -40.82 -0.37 2.72 16 21 C 0.02 0.28 6.90 -83.98 -0.58 -0.30 16 22 C 0.29 4.93 15.88 -22.50 -0.36 4.57 16 23 N -0.42 -7.85 18.53 41.81 0.77 -7.08 16 24 C -0.06 -1.03 8.28 -39.05 -0.32 -1.35 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 31 H 0.09 1.55 7.37 -51.92 -0.38 1.16 16 32 H 0.05 1.03 6.10 -51.93 -0.32 0.71 16 33 H 0.04 0.86 4.36 -51.93 -0.23 0.63 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.18 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.19 4.25 4.65 -52.49 -0.24 4.01 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -32.02 315.72 -4.36 -36.38 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.08 Total: 3.87 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.18 Total: 8.03 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 1.06 Total: -49.89 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.25 Total: -18.53 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.02 -4.36 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611472260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.948 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds