Wall clock time and date at job start Mon Mar 30 2020 02:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00074 * 2 1 4 4 C 1.52996 * 109.47219 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47007 * 65.00317 * 4 3 2 6 6 C 1.46502 * 120.00128 * 269.99832 * 5 4 3 7 7 C 1.50698 * 109.47116 * 274.71454 * 6 5 4 8 8 H 1.07997 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99787 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99899 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00220 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47335 * 89.99548 * 11 9 7 13 13 H 1.48502 * 109.47457 * 209.99685 * 11 9 7 14 14 H 1.48501 * 109.47132 * 329.99717 * 11 9 7 15 15 C 1.34780 * 120.00535 * 89.99953 * 5 4 3 16 16 O 1.21618 * 119.99374 * 4.05626 * 15 5 4 17 17 C 1.47369 * 120.00521 * 184.05989 * 15 5 4 18 18 C 1.38125 * 126.47539 * 145.34587 * 17 15 5 19 19 N 1.34425 * 108.39311 * 180.02562 * 18 17 15 20 20 H 0.97002 * 125.39121 * 179.97438 * 19 18 17 21 21 C 1.37708 * 109.21792 * 359.76769 * 19 18 17 22 22 C 1.43199 * 125.83956 * 180.23991 * 21 19 18 23 23 N 8.57188 * 127.50767 * 246.81025 * 2 1 3 24 24 C 1.36357 * 108.31422 * 0.37602 * 21 19 18 25 25 H 1.08996 * 109.47236 * 299.99926 * 1 2 3 26 26 H 1.08994 * 109.46993 * 60.00203 * 1 2 3 27 27 H 1.09003 * 109.47144 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47414 * 59.99986 * 3 2 1 29 29 H 1.09005 * 109.47114 * 299.99966 * 3 2 1 30 30 H 1.08996 * 109.47596 * 305.00062 * 4 3 2 31 31 H 1.09007 * 109.47240 * 184.99967 * 4 3 2 32 32 H 1.09006 * 109.46506 * 34.71396 * 6 5 4 33 33 H 1.09002 * 109.47371 * 154.71117 * 6 5 4 34 34 H 0.96998 * 120.00526 * 180.02562 * 10 9 7 35 35 H 1.08004 * 125.79961 * 0.03542 * 18 17 15 36 36 H 1.07994 * 126.49302 * 179.89351 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8926 -1.3404 7 6 5.4625 -1.3084 -0.8317 8 1 6.1582 -0.5624 -0.4769 9 6 5.8148 -2.6413 -0.8184 10 7 6.9982 -3.0043 -0.3741 11 14 4.6114 -3.9317 -1.4316 12 1 4.8162 -4.1480 -2.8864 13 1 4.8394 -5.2064 -0.7047 14 1 3.2218 -3.4665 -1.1911 15 6 4.2633 1.3329 -2.3201 16 8 4.2272 2.5448 -2.2246 17 6 4.6205 0.7052 -3.6047 18 6 4.3070 1.1771 -4.8644 19 7 4.8088 0.3239 -5.7740 20 1 4.7309 0.4188 -6.7362 21 6 5.4549 -0.7036 -5.1236 22 6 6.1215 -1.8050 -5.7506 23 7 6.6482 -2.6776 -6.2504 24 6 5.3487 -0.4944 -3.7803 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 3.3313 -1.3641 -0.7360 33 1 3.9967 -1.2040 -2.3792 34 1 7.2463 -3.9419 -0.3650 35 1 3.7531 2.0785 -5.0816 36 1 5.7488 -1.1232 -2.9988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611472260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:30 Heat of formation + Delta-G solvation = -14.156196 kcal Electronic energy + Delta-G solvation = -21665.432226 eV Core-core repulsion = 18343.659683 eV Total energy + Delta-G solvation = -3321.772544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.44620 -40.30257 -38.57493 -37.57660 -36.63154 -34.55714 -32.86015 -31.07653 -30.67471 -29.27813 -27.10016 -24.88749 -24.26845 -23.48959 -22.32283 -20.94256 -19.19853 -19.00429 -17.74986 -17.30227 -16.95828 -16.64553 -16.59510 -15.95821 -15.84003 -15.77161 -15.15939 -15.08227 -14.70781 -14.29463 -14.14831 -14.04987 -13.96795 -13.45963 -13.21872 -13.17244 -12.81044 -12.67156 -12.59802 -12.41302 -12.00787 -11.87037 -11.62600 -10.84293 -10.76268 -10.48185 -9.93484 -9.41810 -9.17959 -8.27326 -6.29839 0.41065 1.02041 1.27827 1.36561 1.40577 1.49897 2.10569 2.28827 2.34735 2.41322 2.55502 3.00652 3.08590 3.15232 3.94710 4.22770 4.27716 4.34004 4.42125 4.48800 4.60699 4.63020 4.66131 4.81384 4.90379 4.92664 5.02253 5.14622 5.18929 5.52518 5.61223 5.67143 5.87119 6.25151 6.29606 6.37014 6.51655 6.72146 6.81865 7.30664 7.47501 8.88154 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.008432 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.635030 B = 3319.913972 C = 4634.785473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.058 3.942 4 C 0.115 3.885 5 N -0.584 5.584 6 C 0.217 3.783 7 C -0.523 4.523 8 H 0.037 0.963 9 C 0.030 3.970 10 N -0.937 5.937 11 Si 0.915 3.085 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.236 1.236 15 C 0.586 3.414 16 O -0.593 6.593 17 C -0.257 4.257 18 C 0.141 3.859 19 N -0.496 5.496 20 H 0.445 0.555 21 C 0.022 3.978 22 C 0.303 3.697 23 N -0.453 5.453 24 C -0.081 4.081 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.266 0.734 35 H 0.230 0.770 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 8.889 -7.562 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.019 4.019 4 C -0.008 4.008 5 N -0.312 5.312 6 C 0.095 3.905 7 C -0.562 4.562 8 H 0.055 0.945 9 C -0.169 4.169 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.159 1.159 15 C 0.377 3.623 16 O -0.477 6.477 17 C -0.266 4.266 18 C -0.003 4.003 19 N -0.093 5.093 20 H 0.288 0.712 21 C -0.089 4.089 22 C -0.011 4.011 23 N -0.130 5.130 24 C -0.109 4.109 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.858 7.784 -8.418 17.227 hybrid contribution -0.096 -0.555 0.126 0.578 sum -12.954 7.229 -8.291 16.995 Atomic orbital electron populations 1.22878 0.79980 1.03316 1.00751 1.87971 1.21145 1.28454 1.95522 1.22928 0.93024 0.84713 1.01258 1.21504 0.93171 0.99501 0.86657 1.47679 1.64043 1.08162 1.11321 1.19815 0.95232 0.77094 0.98368 1.21498 1.00158 0.92579 1.41926 0.94493 1.25538 0.96234 1.00235 0.94938 1.70026 1.21977 1.17651 1.48062 0.86182 0.81815 0.79103 0.79030 1.19381 1.21230 1.15926 1.17677 0.75431 0.85463 0.83731 1.90655 1.57021 1.14387 1.85608 1.19527 1.13129 1.00112 0.93815 1.22705 0.96969 0.95118 0.85526 1.41381 1.40548 1.16955 1.10386 0.71173 1.14952 1.11404 0.92509 0.90049 1.24407 0.92114 0.92044 0.92529 1.81217 1.11966 1.11329 1.08517 1.22171 0.97691 0.96740 0.94304 0.92681 0.93534 0.89340 0.90153 0.93196 0.90588 0.88763 0.94129 0.93150 0.92507 0.75353 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -12.81 9.46 -148.98 -1.41 -14.22 16 3 C 0.06 1.65 6.28 71.98 0.45 2.10 16 4 C 0.11 4.02 5.86 86.38 0.51 4.52 16 5 N -0.58 -23.49 2.42 -830.08 -2.01 -25.50 16 6 C 0.22 9.62 3.61 85.63 0.31 9.93 16 7 C -0.52 -27.83 7.84 25.60 0.20 -27.63 16 8 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 9 C 0.03 1.64 5.27 84.66 0.45 2.09 16 10 N -0.94 -56.33 13.96 21.45 0.30 -56.03 16 11 Si 0.91 41.93 27.47 68.60 1.88 43.81 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 15 C 0.59 22.71 7.60 86.65 0.66 23.37 16 16 O -0.59 -24.04 16.61 -4.09 -0.07 -24.11 16 17 C -0.26 -8.53 5.46 -20.12 -0.11 -8.64 16 18 C 0.14 2.97 11.87 84.27 1.00 3.97 16 19 N -0.50 -9.27 6.02 -186.47 -1.12 -10.39 16 20 H 0.45 4.20 8.96 -92.71 -0.83 3.37 16 21 C 0.02 0.65 6.90 39.03 0.27 0.92 16 22 C 0.30 9.97 15.88 88.34 1.40 11.38 16 23 N -0.45 -16.53 18.53 18.99 0.35 -16.18 16 24 C -0.08 -2.98 8.28 22.62 0.19 -2.79 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 31 H 0.09 3.19 7.37 -2.38 -0.02 3.17 16 32 H 0.04 1.85 6.10 -2.38 -0.01 1.83 16 33 H 0.05 2.17 4.36 -2.39 -0.01 2.16 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.15 6.99 4.65 -2.91 -0.01 6.98 16 Total: -1.00 -73.10 315.72 4.74 -68.36 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.24 Total: 13.23 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.57 Total: 21.03 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -2.48 Total: -108.10 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.48 Total: -38.33 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.81 kcal Total: -73.10 4.74 -68.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611472260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.207 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds