Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.46884 * 2 1 4 4 C 1.35496 * 117.00079 * 179.97438 * 3 2 1 5 5 C 1.39611 * 119.97118 * 180.02562 * 4 3 2 6 6 N 1.31548 * 120.04907 * 179.72009 * 5 4 3 7 7 C 1.33264 * 119.97934 * 0.51456 * 6 5 4 8 8 C 1.47757 * 120.03422 * 179.76420 * 7 6 5 9 9 O 1.21601 * 119.99957 * 171.78838 * 8 7 6 10 10 N 1.34784 * 120.00150 * 351.78973 * 8 7 6 11 11 C 1.36821 * 120.00179 * 174.14292 * 10 8 7 12 12 H 1.07999 * 120.00107 * 230.22609 * 11 10 8 13 13 C 1.39081 * 119.99922 * 50.21944 * 11 10 8 14 14 N 1.31343 * 119.99835 * 190.78564 * 13 11 10 15 15 Si 1.86798 * 119.99804 * 10.79495 * 13 11 10 16 16 H 1.48502 * 109.47179 * 264.36811 * 15 13 11 17 17 H 1.48501 * 109.47442 * 24.37314 * 15 13 11 18 18 H 1.48502 * 109.47060 * 144.36924 * 15 13 11 19 19 C 1.46494 * 119.99650 * 354.14389 * 10 8 7 20 20 C 1.53002 * 117.50097 * 182.96980 * 19 10 8 21 21 C 1.53001 * 117.50121 * 114.31170 * 19 10 8 22 22 C 1.39480 * 119.93311 * 359.48638 * 7 6 5 23 23 N 1.32056 * 119.95178 * 0.25450 * 22 7 6 24 24 H 1.08990 * 109.47298 * 59.99622 * 1 2 3 25 25 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46587 * 299.99354 * 1 2 3 27 27 H 1.09006 * 109.46564 * 240.00288 * 2 1 3 28 28 H 1.08999 * 109.47033 * 120.00296 * 2 1 3 29 29 H 1.08000 * 119.97373 * 0.02562 * 5 4 3 30 30 H 0.97002 * 119.99956 * 180.02562 * 14 13 11 31 31 H 1.09004 * 115.55204 * 328.63580 * 19 10 8 32 32 H 1.09007 * 117.49489 * 359.97438 * 20 19 10 33 33 H 1.08996 * 117.50352 * 145.01863 * 20 19 10 34 34 H 1.09002 * 117.50042 * 214.98186 * 21 19 10 35 35 H 1.09004 * 117.49324 * 359.96812 * 21 19 10 36 36 H 1.08005 * 120.02811 * 180.23586 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8825 2.8152 0.0011 6 7 5.1864 2.9894 0.0072 7 6 5.9993 1.9335 0.0025 8 6 7.4641 2.1278 0.0040 9 8 8.2038 1.1738 0.1502 10 7 7.9803 3.3625 -0.1565 11 6 9.3286 3.5613 -0.0357 12 1 9.7034 4.3479 0.6023 13 6 10.2164 2.7502 -0.7345 14 7 11.5006 2.7953 -0.4623 15 14 9.5825 1.5968 -2.0601 16 1 9.3760 0.2445 -1.4822 17 1 8.2938 2.1112 -2.5891 18 1 10.5739 1.5177 -3.1629 19 6 7.0977 4.4915 -0.4603 20 6 7.7508 5.8543 -0.6997 21 6 6.9733 5.5943 0.5930 22 6 5.4661 0.6446 0.0019 23 7 4.1568 0.4728 0.0009 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.2237 3.6711 0.0015 30 1 12.1199 2.2299 -0.9499 31 1 6.2090 4.2500 -1.0434 32 1 8.8372 5.9108 -0.6307 33 1 7.2916 6.5094 -1.4400 34 1 6.0029 6.0785 0.7026 35 1 7.5478 5.4794 1.5122 36 1 6.1235 -0.2123 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614477215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = 32.910269 kcal Electronic energy + Delta-G solvation = -21600.445995 eV Core-core repulsion = 18280.714406 eV Total energy + Delta-G solvation = -3319.731589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23631 -39.25045 -38.16635 -36.40509 -34.07138 -33.05074 -32.29525 -31.49217 -30.20171 -25.80818 -25.15017 -23.76072 -22.83634 -21.76279 -21.32636 -19.97094 -18.66605 -18.11761 -17.26324 -16.56544 -16.22487 -15.34386 -15.08938 -14.75947 -14.65343 -14.29387 -13.82524 -13.57943 -13.27980 -13.11628 -12.85627 -12.75387 -12.47896 -11.92600 -11.67029 -11.29252 -11.20883 -11.06312 -10.85072 -10.82202 -10.31071 -10.15558 -9.83841 -9.72549 -9.28807 -8.76344 -8.58419 -8.43366 -7.47853 -6.28583 -4.13404 0.73324 1.15225 2.75761 3.16816 3.43558 3.52482 3.62145 4.05004 4.10767 4.17099 4.37796 4.49034 4.61952 4.75321 4.78372 4.81551 5.05852 5.12114 5.28091 5.33839 5.47311 5.55998 5.60752 5.73398 5.75446 5.78112 5.94620 6.14338 6.29829 6.48005 6.80354 6.97374 6.99985 7.23609 7.72888 7.74495 7.97877 8.64225 8.74313 9.27754 9.66691 10.74750 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.005560 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.665574 B = 5034.706379 C = 5842.130273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.300 6.300 4 C 0.270 3.730 5 C 0.038 3.962 6 N -0.372 5.372 7 C 0.014 3.986 8 C 0.502 3.498 9 O -0.542 6.542 10 N -0.407 5.407 11 C -0.338 4.338 12 H 0.100 0.900 13 C 0.089 3.911 14 N -0.862 5.862 15 Si 0.923 3.077 16 H -0.256 1.256 17 H -0.283 1.283 18 H -0.308 1.308 19 C 0.080 3.920 20 C -0.183 4.183 21 C -0.186 4.186 22 C 0.139 3.861 23 N -0.502 5.502 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.177 0.823 30 H 0.275 0.725 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 -0.957 -0.759 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.206 6.206 4 C 0.087 3.913 5 C -0.128 4.128 6 N -0.090 5.090 7 C -0.125 4.125 8 C 0.291 3.709 9 O -0.426 6.426 10 N -0.125 5.125 11 C -0.464 4.464 12 H 0.118 0.882 13 C -0.121 4.121 14 N -0.496 5.496 15 Si 0.755 3.245 16 H -0.182 1.182 17 H -0.208 1.208 18 H -0.238 1.238 19 C -0.025 4.025 20 C -0.221 4.221 21 C -0.224 4.224 22 C -0.021 4.021 23 N -0.231 5.231 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.194 0.806 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.494 -1.313 -0.692 18.553 hybrid contribution -0.273 -0.729 -0.585 0.974 sum -18.766 -2.043 -1.277 18.920 Atomic orbital electron populations 1.21815 0.92871 1.02915 1.03337 1.22672 0.94836 0.81063 1.02752 1.86202 1.16233 1.30803 1.87352 1.21194 0.84836 0.91920 0.93324 1.23084 0.92298 0.94745 1.02646 1.69014 1.02261 1.31932 1.05808 1.22526 0.96851 0.90427 1.02731 1.17570 0.84308 0.85414 0.83628 1.90605 1.58305 1.39618 1.54036 1.42997 1.06752 1.04488 1.58215 1.18821 0.77677 1.21042 1.28875 0.88232 1.25465 0.94487 0.95976 0.96191 1.69661 1.02711 1.38050 1.39137 0.86047 0.77324 0.83003 0.78151 1.18208 1.20844 1.23760 1.22145 0.95406 0.83296 1.01641 1.23265 1.01388 0.98498 0.98908 1.23119 1.00882 1.04169 0.94273 1.23503 0.89468 0.98199 0.90940 1.68152 1.05491 1.32613 1.16829 0.91609 0.90290 0.91587 0.91485 0.91450 0.80648 0.91476 0.85564 0.87213 0.89592 0.89563 0.89278 0.80016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.62 6.04 37.16 0.22 0.85 16 3 O -0.30 -3.72 10.12 -18.18 -0.18 -3.91 16 4 C 0.27 3.91 7.50 -16.71 -0.13 3.79 16 5 C 0.04 0.53 11.18 -17.16 -0.19 0.34 16 6 N -0.37 -6.49 6.44 -9.50 -0.06 -6.55 16 7 C 0.01 0.28 6.58 -82.89 -0.55 -0.27 16 8 C 0.50 12.28 5.94 -12.37 -0.07 12.20 16 9 O -0.54 -14.77 11.89 5.28 0.06 -14.71 16 10 N -0.41 -10.03 2.39 -108.82 -0.26 -10.29 16 11 C -0.34 -9.40 8.21 -15.01 -0.12 -9.52 16 12 H 0.10 2.89 7.69 -52.49 -0.40 2.49 16 13 C 0.09 2.57 5.07 -17.45 -0.09 2.49 16 14 N -0.86 -25.70 13.95 55.50 0.77 -24.92 16 15 Si 0.92 24.44 24.55 -169.99 -4.17 20.27 16 16 H -0.26 -6.98 6.49 56.52 0.37 -6.62 16 17 H -0.28 -7.35 7.03 56.52 0.40 -6.95 16 18 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 19 C 0.08 1.62 4.83 -67.93 -0.33 1.29 16 20 C -0.18 -3.32 9.82 -26.69 -0.26 -3.59 16 21 C -0.19 -3.25 10.36 -26.69 -0.28 -3.53 16 22 C 0.14 2.47 10.76 -16.99 -0.18 2.28 16 23 N -0.50 -7.99 9.37 -12.74 -0.12 -8.11 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.69 8.11 -51.93 -0.42 0.26 16 28 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.28 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.13 2.40 5.89 -51.93 -0.31 2.09 16 32 H 0.11 2.24 6.85 -51.92 -0.36 1.89 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.18 3.12 7.66 -52.48 -0.40 2.72 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -32.10 305.45 -5.39 -37.50 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.44 Total: 0.46 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -1.59 Total: 5.66 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.33 Total: -49.87 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.12 Total: -18.62 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.17 Total: 20.27 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.10 -5.39 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614477215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.407 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds