Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.46884 * 2 1 4 4 C 1.35496 * 117.00079 * 179.97438 * 3 2 1 5 5 C 1.39611 * 119.97118 * 180.02562 * 4 3 2 6 6 N 1.31548 * 120.04907 * 179.72009 * 5 4 3 7 7 C 1.33264 * 119.97934 * 0.51456 * 6 5 4 8 8 C 1.47757 * 120.03422 * 179.76420 * 7 6 5 9 9 O 1.21601 * 119.99957 * 171.78838 * 8 7 6 10 10 N 1.34784 * 120.00150 * 351.78973 * 8 7 6 11 11 C 1.36821 * 120.00179 * 174.14292 * 10 8 7 12 12 H 1.07999 * 120.00107 * 230.22609 * 11 10 8 13 13 C 1.39081 * 119.99922 * 50.21944 * 11 10 8 14 14 N 1.31343 * 119.99835 * 190.78564 * 13 11 10 15 15 Si 1.86798 * 119.99804 * 10.79495 * 13 11 10 16 16 H 1.48502 * 109.47179 * 264.36811 * 15 13 11 17 17 H 1.48501 * 109.47442 * 24.37314 * 15 13 11 18 18 H 1.48502 * 109.47060 * 144.36924 * 15 13 11 19 19 C 1.46494 * 119.99650 * 354.14389 * 10 8 7 20 20 C 1.53002 * 117.50097 * 182.96980 * 19 10 8 21 21 C 1.53001 * 117.50121 * 114.31170 * 19 10 8 22 22 C 1.39480 * 119.93311 * 359.48638 * 7 6 5 23 23 N 1.32056 * 119.95178 * 0.25450 * 22 7 6 24 24 H 1.08990 * 109.47298 * 59.99622 * 1 2 3 25 25 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46587 * 299.99354 * 1 2 3 27 27 H 1.09006 * 109.46564 * 240.00288 * 2 1 3 28 28 H 1.08999 * 109.47033 * 120.00296 * 2 1 3 29 29 H 1.08000 * 119.97373 * 0.02562 * 5 4 3 30 30 H 0.97002 * 119.99956 * 180.02562 * 14 13 11 31 31 H 1.09004 * 115.55204 * 328.63580 * 19 10 8 32 32 H 1.09007 * 117.49489 * 359.97438 * 20 19 10 33 33 H 1.08996 * 117.50352 * 145.01863 * 20 19 10 34 34 H 1.09002 * 117.50042 * 214.98186 * 21 19 10 35 35 H 1.09004 * 117.49324 * 359.96812 * 21 19 10 36 36 H 1.08005 * 120.02811 * 180.23586 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8825 2.8152 0.0011 6 7 5.1864 2.9894 0.0072 7 6 5.9993 1.9335 0.0025 8 6 7.4641 2.1278 0.0040 9 8 8.2038 1.1738 0.1502 10 7 7.9803 3.3625 -0.1565 11 6 9.3286 3.5613 -0.0357 12 1 9.7034 4.3479 0.6023 13 6 10.2164 2.7502 -0.7345 14 7 11.5006 2.7953 -0.4623 15 14 9.5825 1.5968 -2.0601 16 1 9.3760 0.2445 -1.4822 17 1 8.2938 2.1112 -2.5891 18 1 10.5739 1.5177 -3.1629 19 6 7.0977 4.4915 -0.4603 20 6 7.7508 5.8543 -0.6997 21 6 6.9733 5.5943 0.5930 22 6 5.4661 0.6446 0.0019 23 7 4.1568 0.4728 0.0009 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.2237 3.6711 0.0015 30 1 12.1199 2.2299 -0.9499 31 1 6.2090 4.2500 -1.0434 32 1 8.8372 5.9108 -0.6307 33 1 7.2916 6.5094 -1.4400 34 1 6.0029 6.0785 0.7026 35 1 7.5478 5.4794 1.5122 36 1 6.1235 -0.2123 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614477215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = 9.263931 kcal Electronic energy + Delta-G solvation = -21601.471377 eV Core-core repulsion = 18280.714406 eV Total energy + Delta-G solvation = -3320.756971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.55784 -40.84209 -39.43598 -38.11026 -35.37178 -35.02017 -33.50189 -33.11783 -31.42880 -27.61001 -26.36634 -25.29399 -23.76632 -23.23563 -22.82925 -21.77517 -19.86767 -19.66277 -18.73671 -17.99893 -17.58696 -17.11010 -16.74539 -16.18974 -15.95654 -15.47905 -15.36719 -15.20860 -15.02145 -14.56650 -14.49610 -13.70940 -13.49265 -13.40924 -13.08774 -12.81823 -12.56240 -12.40147 -12.29769 -12.16846 -12.14567 -11.78937 -11.59938 -11.17915 -10.97224 -10.84383 -10.09509 -9.87126 -9.33560 -8.46503 -6.32381 -0.62491 -0.10944 1.20832 1.31747 1.45035 1.69814 1.80278 2.33580 2.42716 2.65414 2.87420 2.94281 3.01305 3.30374 3.39201 3.76934 3.98633 4.05797 4.18475 4.20368 4.32377 4.41866 4.43444 4.50651 4.66558 4.93551 4.95378 4.97678 5.09276 5.22879 5.33281 5.51331 5.64912 5.81774 5.89677 5.95368 6.45048 6.67836 6.77254 7.20616 7.70941 8.60958 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.005560 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.665574 B = 5034.706379 C = 5842.130273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.291 6.291 4 C 0.289 3.711 5 C 0.056 3.944 6 N -0.375 5.375 7 C -0.018 4.018 8 C 0.502 3.498 9 O -0.581 6.581 10 N -0.426 5.426 11 C -0.335 4.335 12 H 0.073 0.927 13 C 0.046 3.954 14 N -0.906 5.906 15 Si 0.970 3.030 16 H -0.274 1.274 17 H -0.276 1.276 18 H -0.300 1.300 19 C 0.058 3.942 20 C -0.179 4.179 21 C -0.163 4.163 22 C 0.143 3.857 23 N -0.506 5.506 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.277 0.723 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.498 -0.335 -1.339 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.196 6.196 4 C 0.104 3.896 5 C -0.112 4.112 6 N -0.092 5.092 7 C -0.154 4.154 8 C 0.292 3.708 9 O -0.467 6.467 10 N -0.144 5.144 11 C -0.462 4.462 12 H 0.090 0.910 13 C -0.159 4.159 14 N -0.543 5.543 15 Si 0.800 3.200 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.229 1.229 19 C -0.046 4.046 20 C -0.217 4.217 21 C -0.201 4.201 22 C -0.015 4.015 23 N -0.236 5.236 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.239 0.761 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -23.114 -0.681 -1.278 23.159 hybrid contribution 0.756 -0.944 -0.291 1.244 sum -22.357 -1.625 -1.569 22.471 Atomic orbital electron populations 1.21832 0.90245 1.04402 1.03778 1.22989 0.96865 0.79688 1.02642 1.86253 1.14587 1.32488 1.86245 1.21528 0.85650 0.91916 0.90533 1.23794 0.91327 0.96060 1.00061 1.68885 1.03491 1.31103 1.05751 1.21769 0.94553 0.91972 1.07122 1.18223 0.86421 0.84656 0.81458 1.90557 1.60144 1.40899 1.55099 1.43124 1.06053 1.06009 1.59208 1.18608 0.79656 1.19925 1.28050 0.90974 1.26038 0.94680 0.97318 0.97897 1.69730 1.03574 1.39915 1.41079 0.85314 0.77223 0.80750 0.76707 1.20106 1.20083 1.22890 1.22396 0.95630 0.82519 1.04039 1.23296 0.99908 0.97935 1.00545 1.23138 1.02178 1.02150 0.92683 1.23362 0.90234 0.97316 0.90564 1.68215 1.04541 1.33295 1.17509 0.91136 0.88332 0.91147 0.91606 0.91625 0.76053 0.91383 0.83737 0.90441 0.85799 0.85425 0.91567 0.80401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.05 0.87 6.04 71.98 0.43 1.30 16 3 O -0.29 -5.90 10.12 -87.97 -0.89 -6.79 16 4 C 0.29 7.19 7.50 84.91 0.64 7.83 16 5 C 0.06 1.31 11.18 85.07 0.95 2.26 16 6 N -0.37 -11.89 6.44 -183.97 -1.18 -13.08 16 7 C -0.02 -0.69 6.58 41.74 0.27 -0.41 16 8 C 0.50 24.89 5.94 86.76 0.52 25.40 16 9 O -0.58 -32.70 11.89 -4.04 -0.05 -32.75 16 10 N -0.43 -21.28 2.39 -616.46 -1.47 -22.76 16 11 C -0.34 -19.45 8.21 84.12 0.69 -18.76 16 12 H 0.07 4.47 7.69 -2.91 -0.02 4.45 16 13 C 0.05 2.75 5.07 84.97 0.43 3.19 16 14 N -0.91 -56.73 13.95 21.69 0.30 -56.42 16 15 Si 0.97 52.04 24.55 68.60 1.68 53.73 16 16 H -0.27 -15.34 6.49 99.48 0.65 -14.70 16 17 H -0.28 -14.20 7.03 99.48 0.70 -13.50 16 18 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 19 C 0.06 2.26 4.83 44.99 0.22 2.48 16 20 C -0.18 -6.27 9.82 30.62 0.30 -5.97 16 21 C -0.16 -5.36 10.36 30.62 0.32 -5.04 16 22 C 0.14 4.95 10.76 84.96 0.91 5.86 16 23 N -0.51 -14.81 9.37 -307.00 -2.88 -17.69 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.13 8.11 -2.38 -0.02 1.11 16 28 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 29 H 0.22 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.28 16.26 8.31 -92.71 -0.77 15.49 16 31 H 0.15 5.07 5.89 -2.38 -0.01 5.05 16 32 H 0.08 3.24 6.85 -2.38 -0.02 3.22 16 33 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.18 6.16 7.66 -2.91 -0.02 6.14 16 Total: -1.00 -73.60 305.45 2.96 -70.64 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.03 Total: 7.70 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.42 Total: 17.43 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -5.23 Total: -109.94 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.94 Total: -39.55 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.68 Total: 53.73 kcal Total: -73.60 2.96 -70.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614477215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.899 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds