Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47284 * 2 1 4 4 N 1.46503 * 109.47190 * 239.99682 * 2 1 3 5 5 C 1.34782 * 119.99672 * 85.00067 * 4 2 1 6 6 N 1.34773 * 119.99713 * 180.02562 * 5 4 2 7 7 O 1.21592 * 119.99918 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47036 * 120.00082 * 2 1 3 9 9 O 1.21290 * 119.99723 * 119.99928 * 8 2 1 10 10 N 1.34777 * 120.00217 * 299.99560 * 8 2 1 11 11 C 1.39932 * 119.99921 * 175.58082 * 10 8 2 12 12 C 1.39301 * 119.94481 * 215.04067 * 11 10 8 13 13 C 1.38488 * 120.42787 * 179.72238 * 12 11 10 14 14 C 1.37685 * 120.32105 * 0.55001 * 13 12 11 15 15 C 1.40750 * 119.88297 * 359.72609 * 14 13 12 16 16 C 1.41410 * 120.20388 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99588 * 148.82683 * 16 15 14 18 18 C 1.39929 * 120.00326 * 328.82368 * 16 15 14 19 19 N 1.30828 * 120.00128 * 167.80057 * 18 16 15 20 20 Si 1.86803 * 120.00027 * 347.79759 * 18 16 15 21 21 H 1.48502 * 109.46844 * 92.58461 * 20 18 16 22 22 H 1.48496 * 109.47256 * 212.58509 * 20 18 16 23 23 H 1.48498 * 109.46976 * 332.59013 * 20 18 16 24 24 C 1.38237 * 119.95139 * 35.31043 * 11 10 8 25 25 H 1.08997 * 109.47237 * 299.99697 * 1 2 3 26 26 H 1.09003 * 109.47553 * 60.00150 * 1 2 3 27 27 H 1.09005 * 109.47481 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00351 * 265.00616 * 4 2 1 29 29 H 0.96991 * 120.00305 * 359.97438 * 6 5 4 30 30 H 0.97006 * 120.00040 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99346 * 355.30825 * 10 8 2 32 32 H 1.07997 * 119.78042 * 359.97438 * 12 11 10 33 33 H 1.07994 * 119.83591 * 180.27030 * 13 12 11 34 34 H 1.07997 * 120.05768 * 179.74547 * 14 13 12 35 35 H 0.97004 * 120.00285 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.16101 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 7 2.5958 -0.6538 -3.4577 7 8 1.8583 1.1616 -2.4116 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6966 1.1191 10 7 1.7067 -0.2500 2.4546 11 6 2.0951 -0.9609 3.5956 12 6 1.2619 -0.9937 4.7115 13 6 1.6337 -1.6990 5.8439 14 6 2.8372 -2.3666 5.8830 15 6 3.6919 -2.3376 4.7652 16 6 4.9293 -3.0213 4.7978 17 1 5.3416 -3.4352 3.8895 18 6 5.6195 -3.1615 6.0069 19 7 6.6309 -3.9872 6.0909 20 14 5.0970 -2.1698 7.5012 21 1 4.1343 -2.9613 8.3087 22 1 6.2902 -1.8511 8.3258 23 1 4.4510 -0.9086 7.0570 24 6 3.3073 -1.6249 3.6157 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2489 -1.6318 -1.1526 29 1 2.8265 -1.5949 -3.4141 30 1 2.6888 -0.1698 -4.2932 31 1 1.2067 0.5763 2.5447 32 1 0.3181 -0.4692 4.6918 33 1 0.9784 -1.7216 6.7020 34 1 3.1247 -2.9118 6.7698 35 1 7.1092 -4.0847 6.9291 36 1 3.9558 -1.5968 2.7525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701021773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -46.883109 kcal Electronic energy + Delta-G solvation = -20882.027084 eV Core-core repulsion = 17558.835395 eV Total energy + Delta-G solvation = -3323.191689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55280 -39.47864 -37.57058 -35.02899 -34.63188 -33.85836 -33.22358 -30.59513 -30.28087 -28.47192 -25.28502 -24.71396 -22.20426 -20.96744 -20.87352 -19.96593 -18.68742 -18.07387 -17.43392 -16.33873 -15.97330 -15.79686 -15.41195 -14.90152 -14.78743 -14.59399 -14.32391 -13.75161 -13.35634 -12.94858 -12.74243 -12.64043 -12.36743 -12.04833 -11.75624 -11.57059 -11.12649 -11.09859 -10.58877 -10.47749 -9.91503 -9.87013 -9.82840 -9.56084 -9.37310 -9.23626 -8.99604 -7.69117 -7.22372 -6.90530 -4.49430 2.27252 2.58301 2.59866 2.95660 3.06302 3.11843 3.23147 3.32271 3.46482 3.99296 4.32066 4.49436 4.69110 4.91849 5.03299 5.38858 5.42472 5.60826 5.94902 5.96250 6.14683 6.23985 6.34613 6.52336 6.56233 6.70718 6.74082 6.78284 7.15213 7.24521 7.47169 7.56877 7.79632 7.88569 7.91388 7.99598 8.36370 8.45547 8.46369 8.64340 8.81180 10.12126 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.004136 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.583824 B = 6768.030423 C = 7513.722287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.115 0.885 4 N -0.726 5.726 5 C 0.711 3.289 6 N -0.866 5.866 7 O -0.599 6.599 8 C 0.503 3.497 9 O -0.511 6.511 10 N -0.661 5.661 11 C 0.158 3.842 12 C -0.261 4.261 13 C -0.065 4.065 14 C -0.248 4.248 15 C 0.102 3.898 16 C -0.441 4.441 17 H 0.091 0.909 18 C 0.081 3.919 19 N -0.814 5.814 20 Si 0.917 3.083 21 H -0.271 1.271 22 H -0.294 1.294 23 H -0.243 1.243 24 C -0.194 4.194 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.408 0.592 29 H 0.399 0.601 30 H 0.414 0.586 31 H 0.403 0.597 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.285 0.715 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 6.180 -10.638 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.132 0.868 4 N -0.384 5.384 5 C 0.409 3.591 6 N -0.434 5.434 7 O -0.478 6.478 8 C 0.288 3.712 9 O -0.386 6.386 10 N -0.305 5.305 11 C 0.066 3.934 12 C -0.282 4.282 13 C -0.084 4.084 14 C -0.267 4.267 15 C 0.098 3.902 16 C -0.470 4.470 17 H 0.109 0.891 18 C -0.137 4.137 19 N -0.438 5.438 20 Si 0.744 3.256 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.166 1.166 24 C -0.216 4.216 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.245 0.755 29 H 0.227 0.773 30 H 0.246 0.754 31 H 0.237 0.763 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.137 6.307 -10.536 15.306 hybrid contribution -0.080 -0.061 0.489 0.499 sum -9.217 6.246 -10.048 14.998 Atomic orbital electron populations 1.22151 0.92927 1.03214 1.03491 1.20570 0.95389 0.97737 0.82754 0.86774 1.44786 1.71163 1.14588 1.07881 1.15847 0.77902 0.84791 0.80597 1.42928 1.73448 1.15081 1.11953 1.90957 1.57717 1.14306 1.84807 1.20570 0.80904 0.85121 0.84629 1.90758 1.35839 1.25920 1.86053 1.43314 1.56189 1.26345 1.04698 1.17517 0.93905 0.96751 0.85273 1.20066 1.00489 1.12152 0.95465 1.20368 0.95862 0.96059 0.96095 1.21064 0.96559 1.08621 1.00476 1.17644 0.92838 0.89101 0.90599 1.19514 1.02579 1.28688 0.96232 0.89068 1.26165 0.93841 0.93473 1.00208 1.69659 1.17289 1.28414 1.28473 0.86257 0.77153 0.82433 0.79733 1.19755 1.22178 1.16644 1.21166 0.95741 1.04065 1.00578 0.90854 0.90791 0.91706 0.75546 0.77309 0.75356 0.76254 0.88518 0.88405 0.88144 0.90480 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.38 37.15 0.35 -1.24 16 2 C 0.15 1.78 2.98 -69.08 -0.21 1.57 16 3 H 0.11 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.73 -8.61 4.96 -59.81 -0.30 -8.91 16 5 C 0.71 8.67 8.80 -86.92 -0.77 7.91 16 6 N -0.87 -6.80 8.88 27.64 0.25 -6.55 16 7 O -0.60 -9.48 16.84 5.28 0.09 -9.39 16 8 C 0.50 7.95 7.06 -10.99 -0.08 7.87 16 9 O -0.51 -10.10 13.29 5.55 0.07 -10.03 16 10 N -0.66 -10.38 5.19 -9.91 -0.05 -10.43 16 11 C 0.16 3.23 6.29 -83.76 -0.53 2.70 16 12 C -0.26 -5.10 9.97 -39.09 -0.39 -5.49 16 13 C -0.06 -1.36 10.02 -39.69 -0.40 -1.76 16 14 C -0.25 -5.95 6.99 -38.84 -0.27 -6.22 16 15 C 0.10 2.63 5.13 -106.85 -0.55 2.09 16 16 C -0.44 -12.27 9.60 -37.74 -0.36 -12.63 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 18 C 0.08 2.16 5.47 -17.35 -0.09 2.07 16 19 N -0.81 -22.07 13.93 55.55 0.77 -21.30 16 20 Si 0.92 20.99 24.40 -169.99 -4.15 16.85 16 21 H -0.27 -5.99 6.67 56.52 0.38 -5.61 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.24 -5.65 6.66 56.52 0.38 -5.27 16 24 C -0.19 -4.69 8.43 -38.69 -0.33 -5.02 16 25 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.41 4.60 7.80 -40.82 -0.32 4.29 16 29 H 0.40 2.15 8.84 -40.82 -0.36 1.79 16 30 H 0.41 2.66 8.93 -40.82 -0.36 2.30 16 31 H 0.40 4.73 8.39 -40.82 -0.34 4.39 16 32 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.10 2.40 4.40 -52.49 -0.23 2.17 16 35 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 36 H 0.12 2.99 6.23 -52.49 -0.33 2.66 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -33.15 306.65 -6.34 -39.50 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -4.03 Total: 13.80 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -3.62 Total: -8.16 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.67 Total: -47.18 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.16 Total: -19.41 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.15 Total: 16.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.15 -6.34 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701021773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.387 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds