Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47284 * 2 1 4 4 N 1.46503 * 109.47190 * 239.99682 * 2 1 3 5 5 C 1.34782 * 119.99672 * 85.00067 * 4 2 1 6 6 N 1.34773 * 119.99713 * 180.02562 * 5 4 2 7 7 O 1.21592 * 119.99918 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47036 * 120.00082 * 2 1 3 9 9 O 1.21290 * 119.99723 * 119.99928 * 8 2 1 10 10 N 1.34777 * 120.00217 * 299.99560 * 8 2 1 11 11 C 1.39932 * 119.99921 * 175.58082 * 10 8 2 12 12 C 1.39301 * 119.94481 * 215.04067 * 11 10 8 13 13 C 1.38488 * 120.42787 * 179.72238 * 12 11 10 14 14 C 1.37685 * 120.32105 * 0.55001 * 13 12 11 15 15 C 1.40750 * 119.88297 * 359.72609 * 14 13 12 16 16 C 1.41410 * 120.20388 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99588 * 148.82683 * 16 15 14 18 18 C 1.39929 * 120.00326 * 328.82368 * 16 15 14 19 19 N 1.30828 * 120.00128 * 167.80057 * 18 16 15 20 20 Si 1.86803 * 120.00027 * 347.79759 * 18 16 15 21 21 H 1.48502 * 109.46844 * 92.58461 * 20 18 16 22 22 H 1.48496 * 109.47256 * 212.58509 * 20 18 16 23 23 H 1.48498 * 109.46976 * 332.59013 * 20 18 16 24 24 C 1.38237 * 119.95139 * 35.31043 * 11 10 8 25 25 H 1.08997 * 109.47237 * 299.99697 * 1 2 3 26 26 H 1.09003 * 109.47553 * 60.00150 * 1 2 3 27 27 H 1.09005 * 109.47481 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00351 * 265.00616 * 4 2 1 29 29 H 0.96991 * 120.00305 * 359.97438 * 6 5 4 30 30 H 0.97006 * 120.00040 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99346 * 355.30825 * 10 8 2 32 32 H 1.07997 * 119.78042 * 359.97438 * 12 11 10 33 33 H 1.07994 * 119.83591 * 180.27030 * 13 12 11 34 34 H 1.07997 * 120.05768 * 179.74547 * 14 13 12 35 35 H 0.97004 * 120.00285 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.16101 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 7 2.5958 -0.6538 -3.4577 7 8 1.8583 1.1616 -2.4116 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6966 1.1191 10 7 1.7067 -0.2500 2.4546 11 6 2.0951 -0.9609 3.5956 12 6 1.2619 -0.9937 4.7115 13 6 1.6337 -1.6990 5.8439 14 6 2.8372 -2.3666 5.8830 15 6 3.6919 -2.3376 4.7652 16 6 4.9293 -3.0213 4.7978 17 1 5.3416 -3.4352 3.8895 18 6 5.6195 -3.1615 6.0069 19 7 6.6309 -3.9872 6.0909 20 14 5.0970 -2.1698 7.5012 21 1 4.1343 -2.9613 8.3087 22 1 6.2902 -1.8511 8.3258 23 1 4.4510 -0.9086 7.0570 24 6 3.3073 -1.6249 3.6157 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2489 -1.6318 -1.1526 29 1 2.8265 -1.5949 -3.4141 30 1 2.6888 -0.1698 -4.2932 31 1 1.2067 0.5763 2.5447 32 1 0.3181 -0.4692 4.6918 33 1 0.9784 -1.7216 6.7020 34 1 3.1247 -2.9118 6.7698 35 1 7.1092 -4.0847 6.9291 36 1 3.9558 -1.5968 2.7525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701021773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -74.837161 kcal Electronic energy + Delta-G solvation = -20883.239263 eV Core-core repulsion = 17558.835395 eV Total energy + Delta-G solvation = -3324.403868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78061 -40.66242 -39.22092 -36.31032 -36.03951 -35.07470 -34.69079 -32.20342 -31.59377 -29.96683 -27.15706 -25.82568 -23.62218 -22.69056 -22.07865 -21.25463 -19.80670 -19.59356 -18.57937 -17.83771 -17.41833 -17.16351 -16.65576 -16.44149 -16.10796 -15.80305 -15.62632 -15.18840 -14.65757 -14.56404 -14.36333 -13.90774 -13.79722 -13.33984 -13.28339 -12.91676 -12.86802 -12.66407 -12.37910 -11.71377 -11.63053 -11.53949 -11.15131 -11.05823 -10.78274 -10.65115 -10.15062 -9.52341 -8.89712 -8.86383 -6.54097 0.63001 0.81524 1.26569 1.42993 1.48051 1.54040 1.64097 2.09585 2.13999 2.27542 2.63606 3.40163 3.51910 3.63955 4.00527 4.09729 4.34757 4.54594 4.61043 4.66248 4.78352 4.88093 5.00957 5.01956 5.18972 5.28963 5.35088 5.59798 5.72149 5.78886 5.80248 5.93866 6.01177 6.23159 6.37647 6.48426 6.74596 6.80592 6.95956 7.15320 7.57725 8.23087 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.004136 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.583824 B = 6768.030423 C = 7513.722287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.154 3.846 3 H 0.119 0.881 4 N -0.728 5.728 5 C 0.707 3.293 6 N -0.847 5.847 7 O -0.636 6.636 8 C 0.503 3.497 9 O -0.554 6.554 10 N -0.648 5.648 11 C 0.165 3.835 12 C -0.231 4.231 13 C -0.065 4.065 14 C -0.260 4.260 15 C 0.081 3.919 16 C -0.488 4.488 17 H 0.042 0.958 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.977 3.023 21 H -0.253 1.253 22 H -0.282 1.282 23 H -0.246 1.246 24 C -0.220 4.220 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.410 0.590 29 H 0.413 0.587 30 H 0.423 0.577 31 H 0.427 0.573 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.293 0.707 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 8.316 -9.917 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.137 0.863 4 N -0.385 5.385 5 C 0.405 3.595 6 N -0.416 5.416 7 O -0.518 6.518 8 C 0.291 3.709 9 O -0.432 6.432 10 N -0.295 5.295 11 C 0.071 3.929 12 C -0.251 4.251 13 C -0.084 4.084 14 C -0.279 4.279 15 C 0.078 3.922 16 C -0.518 4.518 17 H 0.060 0.940 18 C -0.172 4.172 19 N -0.489 5.489 20 Si 0.800 3.200 21 H -0.178 1.178 22 H -0.210 1.210 23 H -0.170 1.170 24 C -0.242 4.242 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.247 0.753 29 H 0.243 0.757 30 H 0.257 0.743 31 H 0.266 0.734 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.753 8.443 -9.859 18.197 hybrid contribution 0.846 -0.653 0.059 1.070 sum -11.907 7.790 -9.800 17.278 Atomic orbital electron populations 1.22132 0.90515 1.03559 1.04772 1.20576 0.96989 0.97038 0.80945 0.86332 1.44811 1.71219 1.14652 1.07860 1.16001 0.77888 0.84398 0.81230 1.42769 1.71867 1.15763 1.11175 1.90930 1.59504 1.15895 1.85448 1.21253 0.79677 0.84482 0.85520 1.90765 1.37622 1.28082 1.86687 1.43190 1.56038 1.26861 1.03391 1.17603 0.92511 0.95580 0.87160 1.20677 1.01266 1.09520 0.93681 1.20886 0.94890 0.94597 0.98017 1.21202 0.97696 1.09406 0.99639 1.17746 0.92526 0.89604 0.92310 1.19449 1.04867 1.32143 0.95329 0.94001 1.26938 0.93591 0.94132 1.02575 1.69706 1.19012 1.30454 1.29759 0.85344 0.77502 0.80692 0.76413 1.17780 1.20951 1.16988 1.21113 0.97612 1.05892 0.99550 0.88402 0.90684 0.91786 0.75296 0.75707 0.74290 0.73380 0.83354 0.84072 0.88268 0.89683 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.38 71.98 0.68 -1.86 16 2 C 0.15 3.48 2.98 44.24 0.13 3.61 16 3 H 0.12 2.65 7.58 -2.39 -0.02 2.64 16 4 N -0.73 -16.48 4.96 -461.41 -2.29 -18.76 16 5 C 0.71 16.40 8.80 179.05 1.58 17.98 16 6 N -0.85 -12.10 8.88 -184.74 -1.64 -13.74 16 7 O -0.64 -19.36 16.84 -4.00 -0.07 -19.43 16 8 C 0.50 15.24 7.06 87.66 0.62 15.86 16 9 O -0.55 -22.29 13.29 -3.06 -0.04 -22.33 16 10 N -0.65 -18.38 5.19 -303.64 -1.58 -19.96 16 11 C 0.16 6.34 6.29 38.10 0.24 6.58 16 12 C -0.23 -7.79 9.97 22.59 0.23 -7.56 16 13 C -0.07 -2.44 10.02 22.20 0.22 -2.22 16 14 C -0.26 -12.09 6.99 22.75 0.16 -11.93 16 15 C 0.08 4.32 5.13 -21.31 -0.11 4.21 16 16 C -0.49 -29.22 9.60 23.46 0.23 -28.99 16 17 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 18 C 0.04 2.25 5.47 85.25 0.47 2.71 16 19 N -0.86 -49.59 13.93 21.82 0.30 -49.28 16 20 Si 0.98 43.62 24.40 68.60 1.67 45.29 16 21 H -0.25 -10.41 6.67 99.48 0.66 -9.74 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.25 -10.97 6.66 99.48 0.66 -10.30 16 24 C -0.22 -10.86 8.43 22.85 0.19 -10.67 16 25 H 0.10 1.15 7.68 -2.39 -0.02 1.13 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.41 9.05 7.80 -92.71 -0.72 8.32 16 29 H 0.41 3.86 8.84 -92.71 -0.82 3.04 16 30 H 0.42 4.78 8.93 -92.70 -0.83 3.95 16 31 H 0.43 8.00 8.39 -92.71 -0.78 7.22 16 32 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.10 4.59 4.40 -2.91 -0.01 4.58 16 35 H 0.29 15.05 8.30 -92.71 -0.77 14.29 16 36 H 0.09 4.98 6.23 -2.91 -0.02 4.96 16 Total: -1.00 -77.74 306.65 -1.07 -78.81 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -2.06 Total: 31.69 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.62 Total: -12.28 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -5.20 Total: -101.75 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.11 Total: -41.76 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.67 Total: 45.29 kcal Total: -77.74 -1.07 -78.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701021773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.976 kcal (2) G-P(sol) polarization free energy of solvation -77.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds