Wall clock time and date at job start Mon Mar 30 2020 02:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36869 * 120.00320 * 2 1 4 4 H 1.08002 * 119.99713 * 137.57385 * 3 2 1 5 5 C 1.39044 * 120.00300 * 317.57467 * 3 2 1 6 6 N 1.31357 * 120.00159 * 44.64599 * 5 3 2 7 7 Si 1.86799 * 120.00170 * 224.64600 * 5 3 2 8 8 H 1.48500 * 109.47328 * 89.99642 * 7 5 3 9 9 H 1.48500 * 109.47272 * 210.00103 * 7 5 3 10 10 H 1.48503 * 109.47256 * 329.99733 * 7 5 3 11 11 C 1.34780 * 119.99826 * 180.02562 * 2 1 3 12 12 O 1.21593 * 120.00060 * 187.78611 * 11 2 1 13 13 C 1.47722 * 119.99909 * 7.77645 * 11 2 1 14 14 C 1.39646 * 120.14846 * 138.99949 * 13 11 2 15 15 C 1.37940 * 119.84521 * 180.02562 * 14 13 11 16 16 C 1.38373 * 120.15233 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.84540 * 179.97438 * 16 15 14 18 18 N 1.46492 * 109.47238 * 89.99773 * 17 16 15 19 19 C 1.34785 * 119.99912 * 179.97438 * 18 17 16 20 20 N 1.34775 * 119.99972 * 179.97438 * 19 18 17 21 21 O 1.21579 * 119.99716 * 359.97438 * 19 18 17 22 22 C 1.38373 * 120.30759 * 0.22581 * 16 15 14 23 23 C 1.37941 * 120.14806 * 359.49790 * 22 16 15 24 24 H 1.08997 * 109.46481 * 278.65786 * 1 2 3 25 25 H 1.09002 * 109.46585 * 38.65023 * 1 2 3 26 26 H 1.08996 * 109.47242 * 158.64910 * 1 2 3 27 27 H 0.96996 * 120.00789 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.08050 * 359.97438 * 14 13 11 29 29 H 1.08000 * 119.92591 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.46841 * 209.99447 * 17 16 15 31 31 H 1.08998 * 109.47260 * 329.99184 * 17 16 15 32 32 H 0.97003 * 120.00635 * 359.97438 * 18 17 16 33 33 H 0.97009 * 119.99873 * 359.97438 * 20 19 18 34 34 H 0.96997 * 120.00104 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.93120 * 179.72537 * 22 16 15 36 36 H 1.08001 * 120.07940 * 180.22918 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.0174 1.3076 0.6310 5 6 1.7274 2.2318 -0.8123 6 7 0.4518 2.5383 -0.8790 7 14 2.9743 3.2021 -1.8089 8 1 3.1462 2.5669 -3.1401 9 1 2.4918 4.5956 -1.9839 10 1 4.2764 3.2152 -1.0949 11 6 2.1389 -1.1672 -0.0005 12 8 3.3464 -1.1722 0.1421 13 6 1.4104 -2.4406 -0.1742 14 6 1.9430 -3.4490 -0.9801 15 6 1.2572 -4.6353 -1.1383 16 6 0.0440 -4.8272 -0.5011 17 6 -0.6997 -6.1258 -0.6793 18 7 -0.2827 -7.0735 0.3570 19 6 -0.8197 -8.3091 0.3957 20 7 -0.4356 -9.1812 1.3488 21 8 -1.6505 -8.6370 -0.4291 22 6 -0.4921 -3.8302 0.2948 23 6 0.1858 -2.6411 0.4663 24 1 -0.3632 0.1547 1.0160 25 1 -0.3632 0.8026 -0.6419 26 1 -0.3633 -0.9571 -0.3741 27 1 0.1572 3.2681 -1.4459 28 1 2.8891 -3.3002 -1.4790 29 1 1.6677 -5.4160 -1.7617 30 1 -1.7714 -5.9450 -0.5963 31 1 -0.4763 -6.5406 -1.6622 32 1 0.3799 -6.8118 1.0154 33 1 0.2276 -8.9197 2.0068 34 1 -0.8223 -10.0703 1.3769 35 1 -1.4415 -3.9847 0.7857 36 1 -0.2319 -1.8652 1.0907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:48 Heat of formation + Delta-G solvation = -18.867135 kcal Electronic energy + Delta-G solvation = -20605.176636 eV Core-core repulsion = 17283.199810 eV Total energy + Delta-G solvation = -3321.976825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12134 -39.47067 -37.73272 -34.88895 -34.74416 -33.81630 -32.20216 -30.88722 -30.70769 -26.83325 -26.15359 -24.44477 -22.37540 -21.85789 -21.22897 -19.51318 -18.53083 -17.61531 -17.16839 -16.38037 -15.74109 -15.41610 -15.01472 -14.94457 -14.72047 -14.35650 -14.15944 -13.85218 -13.66311 -13.28013 -12.68924 -12.63184 -12.29674 -11.98051 -11.64886 -11.41816 -11.18986 -10.93857 -10.66254 -10.53370 -10.38685 -10.24817 -9.93625 -9.18275 -8.73783 -8.68262 -8.60854 -8.36384 -7.72534 -6.72499 -3.94412 1.19188 1.62055 2.81412 3.04037 3.13390 3.26144 3.31385 3.67247 4.02218 4.26181 4.37902 4.56859 4.67742 4.91783 4.97807 5.16755 5.38153 5.57595 5.59592 5.67706 5.85638 6.10458 6.23073 6.26223 6.31818 6.47092 6.57294 6.61746 6.67512 6.69183 6.81878 7.11534 7.15066 7.54577 7.76255 8.22363 8.43026 8.43676 9.05389 9.25516 9.91922 10.30333 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.043200 B = 0.003362 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.997986 B = 8325.616465 C = 8540.416658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.431 5.431 3 C -0.351 4.351 4 H 0.098 0.902 5 C 0.077 3.923 6 N -0.820 5.820 7 Si 0.888 3.112 8 H -0.274 1.274 9 H -0.286 1.286 10 H -0.264 1.264 11 C 0.480 3.520 12 O -0.580 6.580 13 C -0.080 4.080 14 C -0.083 4.083 15 C -0.106 4.106 16 C -0.119 4.119 17 C 0.183 3.817 18 N -0.739 5.739 19 C 0.704 3.296 20 N -0.870 5.870 21 O -0.598 6.598 22 C -0.107 4.107 23 C -0.106 4.106 24 H 0.036 0.964 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.274 0.726 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.399 0.601 33 H 0.397 0.603 34 H 0.413 0.587 35 H 0.123 0.877 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -15.509 2.832 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.148 5.148 3 C -0.476 4.476 4 H 0.115 0.885 5 C -0.133 4.133 6 N -0.453 5.453 7 Si 0.712 3.288 8 H -0.199 1.199 9 H -0.212 1.212 10 H -0.188 1.188 11 C 0.269 3.731 12 O -0.466 6.466 13 C -0.084 4.084 14 C -0.103 4.103 15 C -0.124 4.124 16 C -0.120 4.120 17 C 0.060 3.940 18 N -0.395 5.395 19 C 0.402 3.598 20 N -0.438 5.438 21 O -0.477 6.477 22 C -0.126 4.126 23 C -0.125 4.125 24 H 0.054 0.946 25 H 0.133 0.867 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.225 0.775 34 H 0.245 0.755 35 H 0.141 0.859 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.394 -15.413 2.049 16.157 hybrid contribution 0.836 0.488 0.196 0.988 sum -3.557 -14.925 2.245 15.507 Atomic orbital electron populations 1.22959 0.82481 1.02973 1.01748 1.43338 1.05046 1.04635 1.61826 1.19100 1.12477 0.90189 1.25833 0.88455 1.25531 0.95688 0.96766 0.95364 1.70022 1.16499 1.26135 1.32596 0.86586 0.83136 0.77623 0.81437 1.19912 1.21227 1.18795 1.18091 0.87125 0.83176 0.84673 1.90616 1.14073 1.86702 1.55182 1.20465 0.94897 0.95722 0.97281 1.21168 0.99642 0.92109 0.97344 1.20927 0.94418 0.97301 0.99801 1.19795 0.96233 0.95470 1.00486 1.20021 0.98243 0.84947 0.90789 1.45246 1.46760 1.12515 1.35026 1.15996 0.81219 0.80811 0.81768 1.42998 1.49014 1.17571 1.34184 1.90968 1.36692 1.78085 1.41947 1.20944 0.99928 0.93075 0.98622 1.21685 0.94131 0.97201 0.99443 0.94576 0.86706 0.93124 0.91528 0.85324 0.85952 0.90771 0.90821 0.76683 0.77532 0.75503 0.85936 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 8.58 59.85 0.51 1.41 16 2 N -0.43 -10.94 2.99 -123.32 -0.37 -11.31 16 3 C -0.35 -9.68 8.73 -15.00 -0.13 -9.81 16 4 H 0.10 2.84 7.94 -52.49 -0.42 2.43 16 5 C 0.08 1.99 5.32 -17.46 -0.09 1.90 16 6 N -0.82 -20.72 10.81 55.50 0.60 -20.12 16 7 Si 0.89 20.11 29.69 -169.99 -5.05 15.07 16 8 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 9 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.26 -6.08 7.11 56.52 0.40 -5.67 16 11 C 0.48 11.83 7.27 -12.38 -0.09 11.74 16 12 O -0.58 -16.26 16.85 5.28 0.09 -16.17 16 13 C -0.08 -1.54 5.30 -104.97 -0.56 -2.10 16 14 C -0.08 -1.40 9.65 -39.17 -0.38 -1.78 16 15 C -0.11 -1.40 9.68 -39.64 -0.38 -1.79 16 16 C -0.12 -1.45 5.26 -104.52 -0.55 -2.00 16 17 C 0.18 2.00 5.79 -5.20 -0.03 1.97 16 18 N -0.74 -7.13 5.55 -66.42 -0.37 -7.49 16 19 C 0.70 7.77 8.84 -86.91 -0.77 7.00 16 20 N -0.87 -5.70 8.88 27.63 0.25 -5.46 16 21 O -0.60 -9.34 17.18 5.30 0.09 -9.25 16 22 C -0.11 -1.39 9.68 -39.64 -0.38 -1.77 16 23 C -0.11 -1.71 7.36 -39.16 -0.29 -1.99 16 24 H 0.04 0.74 7.79 -51.93 -0.40 0.34 16 25 H 0.12 2.72 5.14 -51.93 -0.27 2.45 16 26 H 0.05 0.96 4.58 -51.93 -0.24 0.72 16 27 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 28 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.40 3.10 8.48 -40.82 -0.35 2.75 16 33 H 0.40 1.47 8.84 -40.82 -0.36 1.11 16 34 H 0.41 2.27 8.93 -40.82 -0.36 1.91 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 2.16 5.74 -52.49 -0.30 1.86 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -33.45 310.82 -7.15 -40.60 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.94 Total: 6.68 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -3.14 Total: 2.77 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.11 Total: -44.39 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.18 Total: -25.42 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.05 Total: 15.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.45 -7.15 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.733 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds