Wall clock time and date at job start Mon Mar 30 2020 02:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36869 * 120.00320 * 2 1 4 4 H 1.08002 * 119.99713 * 137.57385 * 3 2 1 5 5 C 1.39044 * 120.00300 * 317.57467 * 3 2 1 6 6 N 1.31357 * 120.00159 * 44.64599 * 5 3 2 7 7 Si 1.86799 * 120.00170 * 224.64600 * 5 3 2 8 8 H 1.48500 * 109.47328 * 89.99642 * 7 5 3 9 9 H 1.48500 * 109.47272 * 210.00103 * 7 5 3 10 10 H 1.48503 * 109.47256 * 329.99733 * 7 5 3 11 11 C 1.34780 * 119.99826 * 180.02562 * 2 1 3 12 12 O 1.21593 * 120.00060 * 187.78611 * 11 2 1 13 13 C 1.47722 * 119.99909 * 7.77645 * 11 2 1 14 14 C 1.39646 * 120.14846 * 138.99949 * 13 11 2 15 15 C 1.37940 * 119.84521 * 180.02562 * 14 13 11 16 16 C 1.38373 * 120.15233 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.84540 * 179.97438 * 16 15 14 18 18 N 1.46492 * 109.47238 * 89.99773 * 17 16 15 19 19 C 1.34785 * 119.99912 * 179.97438 * 18 17 16 20 20 N 1.34775 * 119.99972 * 179.97438 * 19 18 17 21 21 O 1.21579 * 119.99716 * 359.97438 * 19 18 17 22 22 C 1.38373 * 120.30759 * 0.22581 * 16 15 14 23 23 C 1.37941 * 120.14806 * 359.49790 * 22 16 15 24 24 H 1.08997 * 109.46481 * 278.65786 * 1 2 3 25 25 H 1.09002 * 109.46585 * 38.65023 * 1 2 3 26 26 H 1.08996 * 109.47242 * 158.64910 * 1 2 3 27 27 H 0.96996 * 120.00789 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.08050 * 359.97438 * 14 13 11 29 29 H 1.08000 * 119.92591 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.46841 * 209.99447 * 17 16 15 31 31 H 1.08998 * 109.47260 * 329.99184 * 17 16 15 32 32 H 0.97003 * 120.00635 * 359.97438 * 18 17 16 33 33 H 0.97009 * 119.99873 * 359.97438 * 20 19 18 34 34 H 0.96997 * 120.00104 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.93120 * 179.72537 * 22 16 15 36 36 H 1.08001 * 120.07940 * 180.22918 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.0174 1.3076 0.6310 5 6 1.7274 2.2318 -0.8123 6 7 0.4518 2.5383 -0.8790 7 14 2.9743 3.2021 -1.8089 8 1 3.1462 2.5669 -3.1401 9 1 2.4918 4.5956 -1.9839 10 1 4.2764 3.2152 -1.0949 11 6 2.1389 -1.1672 -0.0005 12 8 3.3464 -1.1722 0.1421 13 6 1.4104 -2.4406 -0.1742 14 6 1.9430 -3.4490 -0.9801 15 6 1.2572 -4.6353 -1.1383 16 6 0.0440 -4.8272 -0.5011 17 6 -0.6997 -6.1258 -0.6793 18 7 -0.2827 -7.0735 0.3570 19 6 -0.8197 -8.3091 0.3957 20 7 -0.4356 -9.1812 1.3488 21 8 -1.6505 -8.6370 -0.4291 22 6 -0.4921 -3.8302 0.2948 23 6 0.1858 -2.6411 0.4663 24 1 -0.3632 0.1547 1.0160 25 1 -0.3632 0.8026 -0.6419 26 1 -0.3633 -0.9571 -0.3741 27 1 0.1572 3.2681 -1.4459 28 1 2.8891 -3.3002 -1.4790 29 1 1.6677 -5.4160 -1.7617 30 1 -1.7714 -5.9450 -0.5963 31 1 -0.4763 -6.5406 -1.6622 32 1 0.3799 -6.8118 1.0154 33 1 0.2276 -8.9197 2.0068 34 1 -0.8223 -10.0703 1.3769 35 1 -1.4415 -3.9847 0.7857 36 1 -0.2319 -1.8652 1.0907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:48 Heat of formation + Delta-G solvation = -44.930616 kcal Electronic energy + Delta-G solvation = -20606.306833 eV Core-core repulsion = 17283.199810 eV Total energy + Delta-G solvation = -3323.107023 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25895 -40.69596 -39.25712 -36.72976 -35.87612 -34.59823 -34.02821 -32.10271 -31.95719 -28.42101 -27.63616 -26.12032 -23.59781 -23.14946 -22.07797 -21.10442 -19.31712 -19.11673 -18.33619 -18.04957 -17.09904 -16.65009 -16.34344 -16.15682 -16.10357 -15.75157 -15.50868 -15.26540 -14.94055 -14.48645 -14.23801 -13.95418 -13.72472 -13.61074 -13.37789 -13.08753 -12.61286 -12.51263 -12.28066 -12.13494 -11.83850 -11.50513 -10.68955 -10.63515 -10.51601 -9.96864 -9.89580 -9.74724 -9.64457 -8.68648 -5.99953 -0.05225 0.43995 1.28906 1.39538 1.48648 1.89629 2.16727 2.21403 2.22201 2.63019 2.86000 3.13555 3.64277 3.74956 3.87190 4.02015 4.05300 4.38258 4.43426 4.61245 4.72217 4.74218 4.86745 4.92325 5.10726 5.23065 5.32608 5.45713 5.53059 5.55638 5.61725 5.91250 5.96004 6.08750 6.16365 6.50357 7.07547 7.11210 7.34428 7.68957 7.99563 8.34379 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.043200 B = 0.003362 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.997986 B = 8325.616465 C = 8540.416658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.446 5.446 3 C -0.399 4.399 4 H 0.062 0.938 5 C 0.053 3.947 6 N -0.826 5.826 7 Si 0.947 3.053 8 H -0.274 1.274 9 H -0.263 1.263 10 H -0.276 1.276 11 C 0.472 3.528 12 O -0.631 6.631 13 C -0.113 4.113 14 C -0.094 4.094 15 C -0.092 4.092 16 C -0.092 4.092 17 C 0.188 3.812 18 N -0.731 5.731 19 C 0.700 3.300 20 N -0.849 5.849 21 O -0.646 6.646 22 C -0.092 4.092 23 C -0.107 4.107 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.285 0.715 28 H 0.116 0.884 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.420 0.580 35 H 0.156 0.844 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -17.438 2.482 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.163 5.163 3 C -0.525 4.525 4 H 0.080 0.920 5 C -0.158 4.158 6 N -0.458 5.458 7 Si 0.769 3.231 8 H -0.199 1.199 9 H -0.188 1.188 10 H -0.201 1.201 11 C 0.263 3.737 12 O -0.519 6.519 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.110 4.110 16 C -0.093 4.093 17 C 0.064 3.936 18 N -0.388 5.388 19 C 0.398 3.602 20 N -0.418 5.418 21 O -0.529 6.529 22 C -0.111 4.111 23 C -0.126 4.126 24 H 0.061 0.939 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.170 0.830 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.244 0.756 34 H 0.253 0.747 35 H 0.174 0.826 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.953 -17.335 1.745 18.411 hybrid contribution 1.269 0.930 0.351 1.612 sum -4.684 -16.405 2.096 17.189 Atomic orbital electron populations 1.22919 0.80515 1.03960 1.01898 1.43524 1.06359 1.04345 1.62086 1.18890 1.12923 0.92219 1.28432 0.91995 1.26033 0.97343 0.97295 0.95103 1.70012 1.17092 1.26455 1.32251 0.85723 0.80436 0.77522 0.79396 1.19950 1.18817 1.20089 1.18970 0.86966 0.84789 0.82997 1.90549 1.16461 1.87841 1.57097 1.20127 0.96588 0.94054 1.00837 1.21177 0.99705 0.92970 0.97439 1.21147 0.94227 0.96256 0.99396 1.19962 0.95241 0.95750 0.98369 1.19941 0.98184 0.84144 0.91362 1.45040 1.46802 1.11998 1.34927 1.16164 0.80818 0.81296 0.81898 1.42812 1.48634 1.17171 1.33207 1.90943 1.38919 1.78999 1.44026 1.21224 1.00529 0.91480 0.97821 1.21657 0.93061 0.98655 0.99232 0.93949 0.88413 0.90168 0.90452 0.86638 0.83021 0.90336 0.90586 0.75335 0.75600 0.74677 0.82609 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.16 8.58 127.77 1.10 3.25 16 2 N -0.45 -23.59 2.99 -662.33 -1.98 -25.57 16 3 C -0.40 -23.20 8.73 84.10 0.73 -22.47 16 4 H 0.06 3.92 7.94 -2.91 -0.02 3.90 16 5 C 0.05 2.80 5.32 84.96 0.45 3.26 16 6 N -0.83 -41.89 10.81 21.68 0.23 -41.66 16 7 Si 0.95 42.07 29.69 68.60 2.04 44.11 16 8 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 C 0.47 24.31 7.27 86.75 0.63 24.94 16 12 O -0.63 -37.56 16.85 -4.01 -0.07 -37.63 16 13 C -0.11 -4.36 5.30 -20.09 -0.11 -4.47 16 14 C -0.09 -3.09 9.65 22.54 0.22 -2.87 16 15 C -0.09 -2.16 9.68 22.23 0.22 -1.94 16 16 C -0.09 -1.89 5.26 -19.80 -0.10 -1.99 16 17 C 0.19 3.33 5.79 85.64 0.50 3.83 16 18 N -0.73 -11.29 5.55 -482.30 -2.68 -13.96 16 19 C 0.70 13.30 8.84 179.05 1.58 14.88 16 20 N -0.85 -8.43 8.88 -184.75 -1.64 -10.07 16 21 O -0.65 -18.74 17.18 -3.96 -0.07 -18.80 16 22 C -0.09 -2.05 9.68 22.23 0.22 -1.83 16 23 C -0.11 -3.28 7.36 22.54 0.17 -3.11 16 24 H 0.04 1.76 7.79 -2.39 -0.02 1.74 16 25 H 0.10 4.66 5.14 -2.39 -0.01 4.65 16 26 H 0.08 2.98 4.58 -2.39 -0.01 2.97 16 27 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 28 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.08 1.42 8.08 -2.38 -0.02 1.40 16 31 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 32 H 0.41 4.64 8.48 -92.71 -0.79 3.86 16 33 H 0.41 1.57 8.84 -92.70 -0.82 0.75 16 34 H 0.42 3.43 8.93 -92.71 -0.83 2.60 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.13 4.11 5.74 -2.91 -0.02 4.09 16 Total: -1.00 -76.80 310.82 0.16 -76.64 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -1.27 Total: 15.47 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.60 Total: 11.47 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -6.06 Total: -91.26 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.14 Total: -56.43 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.04 Total: 44.11 kcal Total: -76.80 0.16 -76.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.708 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds